miRNEST 2.0, an integrative microRNA resource :: BLAST
>54628_sof-miR159a:pmrd
Length = 265
Score = 303 bits (153), Expect = 4e-83
Identities = 237/262 (90%), Gaps = 6/262 (2%)
Strand = Plus / Plus
Query: 1 tgatgcttggattcgaagcggagctcctatcattccaatgaagggcccttttcatgggtg 60
||||||||||||| ||||||||||||||||||||||||||||||||| || | | ||||
Sbjct: 3 tgatgcttggatttgaagcggagctcctatcattccaatgaagggccgttctgaagggtt 62
Query: 61 gttccgctgctcgttcatggttcccactatcctatctcatcatgtatctgtgtatgtact 120
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 63 gttccgctgctcgttcatggttcccactatcctatctcatcatgtatgtgtgtatgtatt 122
Query: 121 ctagag-ggccggagaagagat----tcatgtggtcgtcagtctttgagataggcttgtg 175
| ||| || ||||| ||| | || |||| ||| ||||||||||||||||||||
Sbjct: 123 ttcgagagggaggagaggagctagactctcatggtggtc-gtctttgagataggcttgtg 181
Query: 176 atttgcatgaccgaggagctgcaccgtccccttgctggccgctctttggattgaagggag 235
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 gtttgcatgaccgaggagctgcaccgtccccttgctggccgctctttggattgaagggag 241
Query: 236 ctctgcatcctgatccatccat 257
||||||||||||||||||||||
Sbjct: 242 ctctgcatcctgatccatccat 263
>54629_sof-miR159b:pmrd
Length = 266
Score = 289 bits (146), Expect = 5e-79
Identities = 237/263 (90%), Gaps = 7/263 (2%)
Strand = Plus / Plus
Query: 1 tgatgcttggattcgaagcggagctcctatcattccaatgaagggcccttttcatgggtg 60
||||||||||||| ||||||||||||||||||||||||||||||||| || | | |||||
Sbjct: 3 tgatgcttggatttgaagcggagctcctatcattccaatgaagggccgttctgaagggtg 62
Query: 61 gttccgctgctcgttcatggttcccactatcctatctcatcatgtatctgtgtatgtact 120
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 63 gttccgctgctcgttcatggttcccactatcctatctcatcatgtatgtgtgtatgtatt 122
Query: 121 ct---agagggccg-gagaag--agattcatgtggtcgtcagtctttgagataggcttgt 174
| |||||| | ||| || ||| || ||| ||| |||||||||||||||||||
Sbjct: 123 ttcggagagggaggagaggagctagactctcacggtggtc-gtctttgagataggcttgt 181
Query: 175 gatttgcatgaccgaggagctgcaccgtccccttgctggccgctctttggattgaaggga 234
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 ggtttgcatgaccgaggagctgcaccgtccccttgctggccgctctttggattgaaggga 241
Query: 235 gctctgcatcctgatccatccat 257
|||||||||||||| ||||||||
Sbjct: 242 gctctgcatcctgaaccatccat 264
>54631_sof-miR159d:pmrd
Length = 265
Score = 274 bits (138), Expect = 3e-74
Identities = 235/264 (89%), Gaps = 10/264 (3%)
Strand = Plus / Plus
Query: 1 tgatgcttggattcgaagcggagctcctatcattccaatgaagggcccttttcatgggtg 60
||||||||||||| ||||||||||||||||||||||||||||||||| || | | ||||
Sbjct: 3 tgatgcttggatttgaagcggagctcctatcattccaatgaagggccgttctgaagggtt 62
Query: 61 gttccgctgctcgttcatggttcccactatcctatctcatcatgtatctgtgtatgtact 120
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 63 gttccgctgctcgttcatggttcccactatcctatctcatcatgtatgtgtgtatgtatt 122
Query: 121 ctagag-ggccggagaagagat------tcatgtggtcgtcagtctttgagataggcttg 173
| ||| || ||||| ||| | ||||| || ||| |||| ||||||| |||||
Sbjct: 123 ttcgagagggaggagaggagctagactctcatgggg--gtc-gtctatgagatacgcttg 179
Query: 174 tgatttgcatgaccgaggagctgcaccgtccccttgctggccgctctttggattgaaggg 233
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 tggtttgcatgaccgatgagctgcaccgtccccttgctggccgctctttggattgaaggg 239
Query: 234 agctctgcatcctgatccatccat 257
||||||||||||||||||||||||
Sbjct: 240 agctctgcatcctgatccatccat 263
>54632_sof-miR159e:pmrd
Length = 264
Score = 258 bits (130), Expect = 2e-69
Identities = 234/263 (88%), Gaps = 8/263 (3%)
Strand = Plus / Plus
Query: 1 tgatgcttggattcgaagcggagctcctatcattccaatgaagggcccttttcatgggtg 60
||||||||||||| ||||||||||||||||||||||||||||||||| || | | |||||
Sbjct: 2 tgatgcttggatttgaagcggagctcctatcattccaatgaagggccgttctgaagggtg 61
Query: 61 gttccgctgctcgttcatggttcccactatcctatctcatcatgtatctgtgtatgtact 120
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 62 gttccgctgctcgttcatggttcccactatcctatctcatcatgtatgtgtgtatgtatt 121
Query: 121 ctagag-ggccggagaag----agattcatgtggtcgtcagtctttgagataggcttgtg 175
| ||| || ||||| | ||| || ||| ||| ||||||||||||||||||||
Sbjct: 122 ttcgagagggaggagaggagctagactctcacggtggtc-gtctttgagataggcttgtg 180
Query: 176 atttgcatgaccgaggagctgcaccgtccccttgctggccgctctttggattgaagggag 235
||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 181 gtttgcatgaccgaagagctgcaccgtccccttgctggccgctctttggattgaaaggag 240
Query: 236 ctc-tgcatcctgatccatccat 257
||| ||||| |||||||||||||
Sbjct: 241 ctcttgcat-ctgatccatccat 262
>54930_zma-miR159a:pmrd
Length = 246
Score = 176 bits (89), Expect = 5e-45
Identities = 95/97 (97%)
Strand = Plus / Plus
Query: 156 gtctttgagataggcttgtgatttgcatgaccgaggagctgcaccgtccccttgctggcc 215
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct: 143 gtctttgagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctggcc 202
Query: 216 gctctttggattgaagggagctctgcatcctgatcca 252
|||||||||||||||||||||||||||||||||||||
Sbjct: 203 gctctttggattgaagggagctctgcatcctgatcca 239
Score = 119 bits (60), Expect = 1e-27
Identities = 85/92 (92%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 15 gaagcggagctcctatcattccaatgaagggcccttttcatggg-tggttccgctgctcg 73
||||||||||||||||||||||||||||||| | || | ||| |||||||||||||||
Sbjct: 17 gaagcggagctcctatcattccaatgaagggtcgttccgaagggctggttccgctgctcg 76
Query: 74 ttcatggttcccactatcctatctcatcatgt 105
||||||||||||||||||||||||||||||||
Sbjct: 77 ttcatggttcccactatcctatctcatcatgt 108
>51338_pgl-miR159:pmrd
Length = 226
Score = 145 bits (73), Expect = 2e-35
Identities = 79/81 (97%)
Strand = Plus / Plus
Query: 160 ttgagataggcttgtgatttgcatgaccgaggagctgcaccgtccccttgctggccgctc 219
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 ttgagataggcttgtggcttgcatgaccgaggagctgcaccgtccccttgctggccgctc 205
Query: 220 tttggattgaagggagctctg 240
|||||||||||||||||||||
Sbjct: 206 tttggattgaagggagctctg 226
Score = 85.7 bits (43), Expect = 2e-17
Identities = 74/83 (89%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 19 cggagctcctatcattccaatgaagggcccttttcatgggt-ggttccgctgctcgttca 77
|||||||||||||||||||||||| || |||| ||||| ||| | ||||||||||||
Sbjct: 1 cggagctcctatcattccaatgaaaggttgtttttgtgggttggtacagctgctcgttca 60
Query: 78 tggttcccactatcctatctcat 100
|||||||||||||||||||||||
Sbjct: 61 tggttcccactatcctatctcat 83
>54392_sar-miR159:pmrd
Length = 175
Score = 109 bits (55), Expect = 1e-24
Identities = 73/79 (92%)
Strand = Plus / Plus
Query: 162 gagataggcttgtgatttgcatgaccgaggagctgcaccgtccccttgctggccgctctt 221
||||||||| |||| ||||||||||||||||| ||| |||||||| |||||||||||||
Sbjct: 97 gagataggcctgtggcttgcatgaccgaggagccgcatcgtcccctcgctggccgctctt 156
Query: 222 tggattgaagggagctctg 240
|||||||||||||||||||
Sbjct: 157 tggattgaagggagctctg 175
Score = 61.9 bits (31), Expect = 2e-10
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 56 gggtggttccgctgctcgttcatggttcccactatccta 94
||||||| | |||||||||||||||||||||||||||||
Sbjct: 40 gggtggtacagctgctcgttcatggttcccactatccta 78
>54931_zma-miR159b:pmrd
Length = 221
Score = 99.6 bits (50), Expect = 1e-21
Identities = 79/86 (91%), Gaps = 2/86 (2%)
Strand = Plus / Plus
Query: 160 ttgagataggcttgtgatttgcatgaccgaggagctgcaccgtcccctt-gctggccgct 218
||||||| |||||||| |||||||||||||||||||||| ||||||||| | || |||||
Sbjct: 122 ttgagatgggcttgtggtttgcatgaccgaggagctgca-cgtccccttcgttgaccgct 180
Query: 219 ctttggattgaagggagctctgcatc 244
|||||||||||||||||||||||||
Sbjct: 181 gtttggattgaagggagctctgcatc 206
Score = 65.9 bits (33), Expect = 1e-11
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 54 atgggtggttccgctgctcgttcatggttcccactatcctatctcatca 102
||||||||| | ||||||||||||||||||||||| ||| |||||||||
Sbjct: 56 atgggtggtacagctgctcgttcatggttcccactgtcccatctcatca 104
>48820_osa-miR159b:pmrd
Length = 188
Score = 89.7 bits (45), Expect = 1e-18
Identities = 78/89 (87%)
Strand = Plus / Plus
Query: 162 gagataggcttgtgatttgcatgaccgaggagctgcaccgtccccttgctggccgctctt 221
|||||||||||||| ||||||||||| |||||| | | | | |||||||| || |||||
Sbjct: 100 gagataggcttgtggtttgcatgaccaaggagccgaatcaactccttgctgaccactctt 159
Query: 222 tggattgaagggagctctgcatcctgatc 250
||||||||||||||||||||||| |||||
Sbjct: 160 tggattgaagggagctctgcatcttgatc 188
Score = 54.0 bits (27), Expect = 5e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 66 gctgctcgttcatggttcccactatcctatctcat 100
|||||| |||||||||||||||||| |||||||||
Sbjct: 58 gctgcttgttcatggttcccactattctatctcat 92
>54934_zma-miR159e:pmrd
Length = 203
Score = 85.7 bits (43), Expect = 2e-17
Identities = 74/83 (89%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 160 ttgagataggcttgtgatttgcatgaccgaggagctgcaccgtcccctt-gctggccgct 218
||||||| |||||||| ||||||||||||||||||||| ||||||||| | || |||||
Sbjct: 121 ttgagatgggcttgtggtttgcatgaccgaggagctgcctcgtccccttcgttgaccgct 180
Query: 219 ctttggattgaagggagctctgc 241
|||||| |||||||||||||||
Sbjct: 181 gtttggagtgaagggagctctgc 203
Score = 65.9 bits (33), Expect = 1e-11
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 54 atgggtggttccgctgctcgttcatggttcccactatcctatctcatca 102
||||||||| | ||||||||||||||||||||||| ||| |||||||||
Sbjct: 38 atgggtggtacagctgctcgttcatggttcccactgtcccatctcatca 86
>48657_hvv-miR159b:pmrd
Length = 174
Score = 77.8 bits (39), Expect = 4e-15
Identities = 69/79 (87%)
Strand = Plus / Plus
Query: 162 gagataggcttgtgatttgcatgaccgaggagctgcaccgtccccttgctggccgctctt 221
|||||||||||||| ||||||||| |||||||| || || |||| |||| ||||| ||
Sbjct: 96 gagataggcttgtggtttgcatgatcgaggagccgcttcgatccctcgctgaccgctgtt 155
Query: 222 tggattgaagggagctctg 240
|||||||||||||||||||
Sbjct: 156 tggattgaagggagctctg 174
Score = 58.0 bits (29), Expect = 3e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 66 gctgctcgttcatggttcccactatcctatctc 98
|||||| ||||||||||||||||||||||||||
Sbjct: 49 gctgcttgttcatggttcccactatcctatctc 81
Score = 52.0 bits (26), Expect = 2e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 20 ggagctcctatcattccaatgaaggg 45
||||||||||||||||||||||||||
Sbjct: 2 ggagctcctatcattccaatgaaggg 27
>54673_tae-miR159a:pmrd
Length = 177
Score = 75.8 bits (38), Expect = 1e-14
Identities = 71/82 (86%)
Strand = Plus / Plus
Query: 162 gagataggcttgtgatttgcatgaccgaggagctgcaccgtccccttgctggccgctctt 221
|||| |||| |||| |||||||||||||||||| || || |||| |||| ||||| ||
Sbjct: 96 gagagaggcctgtggtttgcatgaccgaggagccgcttcgatccctcgctgaccgctgtt 155
Query: 222 tggattgaagggagctctgcat 243
||||||||||||||||||||||
Sbjct: 156 tggattgaagggagctctgcat 177
Score = 65.9 bits (33), Expect = 1e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 66 gctgctcgttcatggttcccactatcctatctc 98
|||||||||||||||||||||||||||||||||
Sbjct: 50 gctgctcgttcatggttcccactatcctatctc 82
>54653_spr-miR159:pmrd
Length = 392
Score = 75.8 bits (38), Expect = 1e-14
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 220 tttggattgaagggagctctgcatcctgatccatccat 257
||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctctgcatcctgatccatccat 38
>54937_zma-miR159m:pmrd
Length = 457
Score = 65.9 bits (33), Expect = 1e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 220 tttggattgaagggagctctgcatcctgatcca 252
|||||||||||||||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctctgcatcctgatcca 33
>54674_tae-miR159b:pmrd
Length = 255
Score = 56.0 bits (28), Expect = 1e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 217 ctctttggattgaagggagctctgcatc 244
||||||||||||||||||||||||||||
Sbjct: 227 ctctttggattgaagggagctctgcatc 254
>48819_osa-miR159a:pmrd
Length = 272
Score = 56.0 bits (28), Expect = 1e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 217 ctctttggattgaagggagctctgcatc 244
||||||||||||||||||||||||||||
Sbjct: 239 ctctttggattgaagggagctctgcatc 266
>48796_oru-miR159:pmrd
Length = 274
Score = 56.0 bits (28), Expect = 1e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 217 ctctttggattgaagggagctctgcatc 244
||||||||||||||||||||||||||||
Sbjct: 239 ctctttggattgaagggagctctgcatc 266
>48656_hvv-miR159a:pmrd
Length = 303
Score = 54.0 bits (27), Expect = 5e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 220 tttggattgaagggagctctgcatcctgatc 250
||||||||||||||||||||||||| |||||
Sbjct: 1 tttggattgaagggagctctgcatcttgatc 31
>48825_osa-miR159m:pmrd
Length = 249
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 217 ctctttggattgaagggagctctg 240
||||||||||||||||||||||||
Sbjct: 226 ctctttggattgaagggagctctg 249
>46932_ath-miR159b:pmrd
Length = 196
Score = 46.1 bits (23), Expect = 1e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 218 tctttggattgaagggagctctgcatc 244
|||||||||||||||||||||| ||||
Sbjct: 166 tctttggattgaagggagctcttcatc 192
>54378_pvu-miR159:pmrd
Length = 174
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 218 tctttggattgaagggagctct 239
||||||||||||||||||||||
Sbjct: 151 tctttggattgaagggagctct 172
>54377_pvu-miR159:pmrd
Length = 174
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 218 tctttggattgaagggagctct 239
||||||||||||||||||||||
Sbjct: 151 tctttggattgaagggagctct 172
>48699_mtr-miR159a:pmrd
Length = 168
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 218 tctttggattgaagggagctct 239
||||||||||||||||||||||
Sbjct: 146 tctttggattgaagggagctct 167
>48539_gma-miR159a:pmrd
Length = 214
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 218 tctttggattgaagggagctct 239
||||||||||||||||||||||
Sbjct: 173 tctttggattgaagggagctct 194
>48395_bra-miR159a:pmrd
Length = 185
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 218 tctttggattgaagggagctct 239
||||||||||||||||||||||
Sbjct: 161 tctttggattgaagggagctct 182
>48339_bna-miR159:pmrd
Length = 183
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 218 tctttggattgaagggagctct 239
||||||||||||||||||||||
Sbjct: 159 tctttggattgaagggagctct 180
>46931_ath-miR159a:pmrd
Length = 184
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 218 tctttggattgaagggagctct 239
||||||||||||||||||||||
Sbjct: 161 tctttggattgaagggagctct 182
>48701_mtr-miR159c:pmrd
Length = 44
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 220 tttggattgaagggagctctgcatc 244
|||||||||||||||||||| ||||
Sbjct: 1 tttggattgaagggagctctacatc 25
>54777_vvi-miR159c:pmrd
Length = 190
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 220 tttggattgaagggagctct 239
||||||||||||||||||||
Sbjct: 160 tttggattgaagggagctct 179
>54540_sly-miR159:pmrd
Length = 177
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 220 tttggattgaagggagctct 239
||||||||||||||||||||
Sbjct: 157 tttggattgaagggagctct 176
>52093_ptc-miRf10271-akr:pmrd
Length = 174
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 220 tttggattgaagggagctct 239
||||||||||||||||||||
Sbjct: 149 tttggattgaagggagctct 168
>51604_ptc-miR159c:pmrd
Length = 183
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 220 tttggattgaagggagctct 239
||||||||||||||||||||
Sbjct: 154 tttggattgaagggagctct 173
>51603_ptc-miR159b:pmrd
Length = 187
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 220 tttggattgaagggagctct 239
||||||||||||||||||||
Sbjct: 158 tttggattgaagggagctct 177
>51602_ptc-miR159a:pmrd
Length = 183
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 220 tttggattgaagggagctct 239
||||||||||||||||||||
Sbjct: 154 tttggattgaagggagctct 173
>48728_mtr-miR319b:pmrd
Length = 42
Score = 40.1 bits (20), Expect = 8e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 221 ttggattgaagggagctctgcatc 244
||||||||||||||||||| ||||
Sbjct: 1 ttggattgaagggagctctacatc 24
>48686_ltu-miR159:pmrd
Length = 345
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 220 tttggattgaagggagctct 239
||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctct 20
