miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>50412_osa-miRf11197-akr:pmrd
          Length = 130

 Score = 71.9 bits (36), Expect = 2e-13
 Identities = 51/56 (91%)
 Strand = Plus / Plus

                                                                  
Query: 43 gacgttcgagatttgtccacgtcatcacaagtaaaaagtttactcatggatttatt 98
          ||||||||||||| | |||||||||||| |||||||| ||||||||| ||||||||
Sbjct: 12 gacgttcgagattcgaccacgtcatcacgagtaaaaattttactcatagatttatt 67



 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 42  ggacgttcgagatttgtccacgtcatcacaagtaaaaa 79
           |||||| ||||||| |||||||||||||  ||||||||
Sbjct: 120 ggacgtccgagattcgtccacgtcatcattagtaaaaa 83




>49197_osa-miR2862:pmrd
          Length = 221

 Score = 52.0 bits (26), Expect = 2e-07
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 50  gagatttgtccacgtcatcacaagtaaaaagtttactc 87
           |||||| |||||||||||||| |||||||| |||||||
Sbjct: 175 gagattcgtccacgtcatcacgagtaaaaattttactc 138




>50082_osa-miRf10867-akr:pmrd
          Length = 125

 Score = 44.1 bits (22), Expect = 4e-05
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                 
Query: 43  gacgttcgagatttgtccacgtcatcacaagtaaaaagtttactcatggattta 96
           ||||| |||||||  ||||||||||||  |||| ||| |||||||| |||||||
Sbjct: 117 gacgtccgagattcatccacgtcatcatgagtagaaattttactcacggattta 64




>49047_osa-miR811c:pmrd
          Length = 159

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 42 ggacgttcgagatttgtccacgtca 66
          |||||||||||||| ||||||||||
Sbjct: 19 ggacgttcgagattcgtccacgtca 43