miRNEST 2.0, an integrative microRNA resource :: BLAST
>51738_ptc-miR396e:pmrd
Length = 145
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 1 ggtcatgcttttccacagctttcttgaacttctt 34
||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtcatgcttttccacagctttcttgaacttctt 34
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 108 gaagctcaagaaagctgtgggagaatatgg 137
||||||||||||||||||||||||| ||||
Sbjct: 116 gaagctcaagaaagctgtgggagaacatgg 145
>48579_gma-miR396b:pmrd
Length = 126
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 1 ggtcatgcttttccacagctttcttgaacttctt 34
||||||||||||||||||||||||||||||||||
Sbjct: 11 ggtcatgcttttccacagctttcttgaacttctt 44
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 107 agaagctcaagaaagctgtgggagaatatggc 138
||||||||||||||||||||||||||||||||
Sbjct: 85 agaagctcaagaaagctgtgggagaatatggc 116
>51737_ptc-miR396d:pmrd
Length = 154
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 1 ggtcatgcttttccacagctttcttgaacttc 32
||||||||||||||||||||||||||||||||
Sbjct: 1 ggtcatgcttttccacagctttcttgaacttc 32
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 108 gaagctcaagaaagctgtgggagaatatgg 137
||||||||||||||| ||||||||| ||||
Sbjct: 125 gaagctcaagaaagccgtgggagaacatgg 154
>54869_vvi-miR396b:pmrd
Length = 108
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 4 catgcttttccacagctttcttgaacttctt 34
|||||||||||||||||||||||||||||||
Sbjct: 7 catgcttttccacagctttcttgaacttctt 37
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 4 catgcttttccacagctttcttgaacttc 32
|||| ||| ||||||||||||||||||||
Sbjct: 104 catggtttcccacagctttcttgaacttc 76
>53179_ptc-miRf11357-akr:pmrd
Length = 141
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 4 catgcttttccacagctttcttgaacttctt 34
|||||||||||||||||||||||||||||||
Sbjct: 141 catgcttttccacagctttcttgaacttctt 111
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 108 gaagctcaagaaagctgtgggagaa 132
|||||||||||||||||||||||||
Sbjct: 29 gaagctcaagaaagctgtgggagaa 5
>52080_ptc-miRf10258-akr:pmrd
Length = 141
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 4 catgcttttccacagctttcttgaacttctt 34
|||||||||||||||||||||||||||||||
Sbjct: 141 catgcttttccacagctttcttgaacttctt 111
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 108 gaagctcaagaaagctgtgggagaa 132
|||||||||||||||||||||||||
Sbjct: 29 gaagctcaagaaagctgtgggagaa 5
>48580_gma-miR396c:pmrd
Length = 117
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 5 atgcttttccacagctttcttgaacttctt 34
||||||||||||||||||||||||||||||
Sbjct: 15 atgcttttccacagctttcttgaacttctt 44
>54868_vvi-miR396a:pmrd
Length = 116
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 2 gtcatgcttttccacagctttcttgaact 30
|||||||||||||||||||||||||||||
Sbjct: 5 gtcatgcttttccacagctttcttgaact 33
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 107 agaagctcaagaaagctgtgggag 130
||||||||||||||||||||||||
Sbjct: 83 agaagctcaagaaagctgtgggag 106
>48748_mtr-miR396a:pmrd
Length = 93
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 6 tgcttttccacagctttcttgaacttctt 34
|||||||||||||||||||||||||||||
Sbjct: 1 tgcttttccacagctttcttgaacttctt 29
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 107 agaagctcaagaaagctgtgggagaata 134
||||||||||||||||||||||||||||
Sbjct: 66 agaagctcaagaaagctgtgggagaata 93
>52893_ptc-miRf11071-akr:pmrd
Length = 148
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 5 atgcttttccacagctttcttgaacttc 32
||||||||||||||||||||||||||||
Sbjct: 148 atgcttttccacagctttcttgaacttc 121
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 108 gaagctcaagaaagctgtgggagaa 132
||||||||||||||| |||||||||
Sbjct: 28 gaagctcaagaaagccgtgggagaa 4
>47009_ath-miR396b:pmrd
Length = 135
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 ggtcatgcttttccacagctttcttgaactt 31
|||||| ||||||||||||||||||||||||
Sbjct: 1 ggtcatacttttccacagctttcttgaactt 31
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 108 gaagctcaagaaagctgtggga 129
||||||||||||||||||||||
Sbjct: 104 gaagctcaagaaagctgtggga 125
>54487_sbi-miR396c:pmrd
Length = 162
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 4 catgcttttccacagctttcttgaacttct 33
||||| ||||||||||||||||||||||||
Sbjct: 14 catgcctttccacagctttcttgaacttct 43
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 106 aagaagctcaagaaagctgtggga 129
|||||| |||||||||||||||||
Sbjct: 120 aagaaggtcaagaaagctgtggga 143
>51564_pta-miR396:pmrd
Length = 119
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 2 gtcatgcttttccacagctttcttgaactt 31
||||| ||||||||||||||||||||||||
Sbjct: 8 gtcatacttttccacagctttcttgaactt 37
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 4 catgcttttccacagctttcttgaactt 31
|||||||| |||||| ||||||||||||
Sbjct: 110 catgctttcccacagttttcttgaactt 83
>48947_osa-miR396c:pmrd
Length = 141
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 4 catgcttttccacagctttcttgaacttct 33
||||| ||||||||||||||||||||||||
Sbjct: 4 catgcctttccacagctttcttgaacttct 33
>55078_zma-miR396g:pmrd
Length = 117
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 tttccacagctttcttgaacttctt 34
|||||||||||||||||||||||||
Sbjct: 2 tttccacagctttcttgaacttctt 26
>55077_zma-miR396f:pmrd
Length = 166
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 tttccacagctttcttgaacttctt 34
|||||||||||||||||||||||||
Sbjct: 2 tttccacagctttcttgaacttctt 26
>52304_ptc-miRf10482-akr:pmrd
Length = 102
Score = 50.1 bits (25), Expect = 4e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 2 gtcatgcttttccacagctttcttgaacttctt 34
|||||||| |||||| |||||||||||||||||
Sbjct: 1 gtcatgctattccacggctttcttgaacttctt 33
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 4 catgcttttccacagctttcttgaacttc 32
|||| ||||||||||||||||||||||||
Sbjct: 100 catgtttttccacagctttcttgaacttc 72
>51736_ptc-miR396c:pmrd
Length = 102
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 4 catgcttttccacagctttcttgaacttc 32
|||| ||||||||||||||||||||||||
Sbjct: 4 catgtttttccacagctttcttgaacttc 32
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 3 tcatgcttttccacagctttcttgaacttctt 34
||||||| |||||| |||||||||||||||||
Sbjct: 102 tcatgctattccacggctttcttgaacttctt 71
>52339_ptc-miRf10517-akr:pmrd
Length = 164
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 4 catgcttttccacagctttcttgaactt 31
||||||||||||| ||||||||||||||
Sbjct: 1 catgcttttccacggctttcttgaactt 28
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 109 aagctcaagaaagctgtgggagaatatg 136
|||||||||||||| |||||| ||||||
Sbjct: 137 aagctcaagaaagccgtgggaaaatatg 164
>51740_ptc-miR396g:pmrd
Length = 168
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 4 catgcttttccacagctttcttgaactt 31
||||||||||||| ||||||||||||||
Sbjct: 4 catgcttttccacggctttcttgaactt 31
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 109 aagctcaagaaagctgtgggagaatatg 136
|||||||||||||| |||||| ||||||
Sbjct: 140 aagctcaagaaagccgtgggaaaatatg 167
>54584_smo-miR396:pmrd
Length = 168
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 3 tcatgcttttccacagctttcttgaac 29
|||||||||||||| ||||||||||||
Sbjct: 3 tcatgcttttccacggctttcttgaac 29
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 13 ccacagctttcttgaacttc 32
||||||||||||||||||||
Sbjct: 153 ccacagctttcttgaacttc 134
>48374_bna-miR396a:pmrd
Length = 117
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaactt 31
|||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactt 21
>46888_aqc-miR396b:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaactt 31
|||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactt 21
>55083_zma-miR396l:pmrd
Length = 97
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55082_zma-miR396k:pmrd
Length = 98
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55081_zma-miR396j:pmrd
Length = 98
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55080_zma-miR396i:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55079_zma-miR396h:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 4 ttccacagctttcttgaact 23
>55074_zma-miR396c:pmrd
Length = 104
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 4 ttccacagctttcttgaact 23
>55073_zma-miR396b:pmrd
Length = 136
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>55072_zma-miR396a:pmrd
Length = 137
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>54871_vvi-miR396d:pmrd
Length = 120
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>54870_vvi-miR396c:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>54645_sof-miR396:pmrd
Length = 134
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>54486_sbi-miR396b:pmrd
Length = 128
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>54485_sbi-miR396a:pmrd
Length = 125
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>52079_ptc-miRf10257-akr:pmrd
Length = 130
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 9 ttccacagctttcttgaact 28
>51735_ptc-miR396b:pmrd
Length = 132
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51734_ptc-miR396a:pmrd
Length = 123
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48946_osa-miR396b:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48945_osa-miR396a:pmrd
Length = 154
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48680_lja-miR396:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 16 ttccacagctttcttgaact 35
>48578_gma-miR396a:pmrd
Length = 140
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>48508_ghr-miR396c:pmrd
Length = 115
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>48507_ghr-miR396b:pmrd
Length = 115
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>48485_gcl-miR396a:pmrd
Length = 101
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 101 ttccacagctttcttgaact 82
>48110_ath-miRf11010-akr:pmrd
Length = 165
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 18 ttccacagctttcttgaact 37
>47008_ath-miR396a:pmrd
Length = 151
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>46887_aqc-miR396a:pmrd
Length = 122
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
