miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>48579_gma-miR396b:pmrd
          Length = 126

 Score = 69.9 bits (35), Expect = 5e-13
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                             
Query: 1  tggtcatgcttttccacagctttcttgaacttctt 35
          |||||||||||||||||||||||||||||||||||
Sbjct: 10 tggtcatgcttttccacagctttcttgaacttctt 44



 Score = 65.9 bits (33), Expect = 7e-12
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                            
Query: 108 agaagctcaagaaagctgtgggagaatatggca 140
           |||||||||||||||||||||||||||||||||
Sbjct: 85  agaagctcaagaaagctgtgggagaatatggca 117




>51738_ptc-miR396e:pmrd
          Length = 145

 Score = 67.9 bits (34), Expect = 2e-12
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 2  ggtcatgcttttccacagctttcttgaacttctt 35
          ||||||||||||||||||||||||||||||||||
Sbjct: 1  ggtcatgcttttccacagctttcttgaacttctt 34



 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 109 gaagctcaagaaagctgtgggagaatatgg 138
           ||||||||||||||||||||||||| ||||
Sbjct: 116 gaagctcaagaaagctgtgggagaacatgg 145




>51737_ptc-miR396d:pmrd
          Length = 154

 Score = 63.9 bits (32), Expect = 3e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                          
Query: 2  ggtcatgcttttccacagctttcttgaacttc 33
          ||||||||||||||||||||||||||||||||
Sbjct: 1  ggtcatgcttttccacagctttcttgaacttc 32



 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 109 gaagctcaagaaagctgtgggagaatatgg 138
           ||||||||||||||| ||||||||| ||||
Sbjct: 125 gaagctcaagaaagccgtgggagaacatgg 154




>54869_vvi-miR396b:pmrd
          Length = 108

 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 5  catgcttttccacagctttcttgaacttctt 35
          |||||||||||||||||||||||||||||||
Sbjct: 7  catgcttttccacagctttcttgaacttctt 37



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 5   catgcttttccacagctttcttgaacttc 33
           |||| ||| ||||||||||||||||||||
Sbjct: 104 catggtttcccacagctttcttgaacttc 76




>53179_ptc-miRf11357-akr:pmrd
          Length = 141

 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                          
Query: 5   catgcttttccacagctttcttgaacttctt 35
           |||||||||||||||||||||||||||||||
Sbjct: 141 catgcttttccacagctttcttgaacttctt 111



 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 109 gaagctcaagaaagctgtgggagaa 133
           |||||||||||||||||||||||||
Sbjct: 29  gaagctcaagaaagctgtgggagaa 5




>52080_ptc-miRf10258-akr:pmrd
          Length = 141

 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                          
Query: 5   catgcttttccacagctttcttgaacttctt 35
           |||||||||||||||||||||||||||||||
Sbjct: 141 catgcttttccacagctttcttgaacttctt 111



 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 109 gaagctcaagaaagctgtgggagaa 133
           |||||||||||||||||||||||||
Sbjct: 29  gaagctcaagaaagctgtgggagaa 5




>48580_gma-miR396c:pmrd
          Length = 117

 Score = 60.0 bits (30), Expect = 5e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 6  atgcttttccacagctttcttgaacttctt 35
          ||||||||||||||||||||||||||||||
Sbjct: 15 atgcttttccacagctttcttgaacttctt 44




>54868_vvi-miR396a:pmrd
          Length = 116

 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 3  gtcatgcttttccacagctttcttgaact 31
          |||||||||||||||||||||||||||||
Sbjct: 5  gtcatgcttttccacagctttcttgaact 33



 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 108 agaagctcaagaaagctgtgggagaatatggca 140
           |||||||||||||||||||||||| | ||||||
Sbjct: 83  agaagctcaagaaagctgtgggaggacatggca 115




>48748_mtr-miR396a:pmrd
          Length = 93

 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 7  tgcttttccacagctttcttgaacttctt 35
          |||||||||||||||||||||||||||||
Sbjct: 1  tgcttttccacagctttcttgaacttctt 29



 Score = 56.0 bits (28), Expect = 7e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 108 agaagctcaagaaagctgtgggagaata 135
           ||||||||||||||||||||||||||||
Sbjct: 66  agaagctcaagaaagctgtgggagaata 93




>52893_ptc-miRf11071-akr:pmrd
          Length = 148

 Score = 56.0 bits (28), Expect = 7e-09
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                       
Query: 6   atgcttttccacagctttcttgaacttc 33
           ||||||||||||||||||||||||||||
Sbjct: 148 atgcttttccacagctttcttgaacttc 121



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 109 gaagctcaagaaagctgtgggagaa 133
           ||||||||||||||| |||||||||
Sbjct: 28  gaagctcaagaaagccgtgggagaa 4




>47009_ath-miR396b:pmrd
          Length = 135

 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 2  ggtcatgcttttccacagctttcttgaactt 32
          |||||| ||||||||||||||||||||||||
Sbjct: 1  ggtcatacttttccacagctttcttgaactt 31



 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 109 gaagctcaagaaagctgtggga 130
           ||||||||||||||||||||||
Sbjct: 104 gaagctcaagaaagctgtggga 125




>54487_sbi-miR396c:pmrd
          Length = 162

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 5  catgcttttccacagctttcttgaacttct 34
          ||||| ||||||||||||||||||||||||
Sbjct: 14 catgcctttccacagctttcttgaacttct 43



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 107 aagaagctcaagaaagctgtggga 130
           |||||| |||||||||||||||||
Sbjct: 120 aagaaggtcaagaaagctgtggga 143




>51564_pta-miR396:pmrd
          Length = 119

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 3  gtcatgcttttccacagctttcttgaactt 32
          ||||| ||||||||||||||||||||||||
Sbjct: 8  gtcatacttttccacagctttcttgaactt 37



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 5   catgcttttccacagctttcttgaactt 32
           |||||||| |||||| ||||||||||||
Sbjct: 110 catgctttcccacagttttcttgaactt 83




>48947_osa-miR396c:pmrd
          Length = 141

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 5  catgcttttccacagctttcttgaacttct 34
          ||||| ||||||||||||||||||||||||
Sbjct: 4  catgcctttccacagctttcttgaacttct 33




>55078_zma-miR396g:pmrd
          Length = 117

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 11 tttccacagctttcttgaacttctt 35
          |||||||||||||||||||||||||
Sbjct: 2  tttccacagctttcttgaacttctt 26




>55077_zma-miR396f:pmrd
          Length = 166

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 11 tttccacagctttcttgaacttctt 35
          |||||||||||||||||||||||||
Sbjct: 2  tttccacagctttcttgaacttctt 26




>52304_ptc-miRf10482-akr:pmrd
          Length = 102

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                           
Query: 3  gtcatgcttttccacagctttcttgaacttctt 35
          |||||||| |||||| |||||||||||||||||
Sbjct: 1  gtcatgctattccacggctttcttgaacttctt 33



 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 5   catgcttttccacagctttcttgaacttc 33
           |||| ||||||||||||||||||||||||
Sbjct: 100 catgtttttccacagctttcttgaacttc 72




>51736_ptc-miR396c:pmrd
          Length = 102

 Score = 50.1 bits (25), Expect = 4e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 5  catgcttttccacagctttcttgaacttc 33
          |||| ||||||||||||||||||||||||
Sbjct: 4  catgtttttccacagctttcttgaacttc 32



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 4   tcatgcttttccacagctttcttgaacttctt 35
           ||||||| |||||| |||||||||||||||||
Sbjct: 102 tcatgctattccacggctttcttgaacttctt 71




>52339_ptc-miRf10517-akr:pmrd
          Length = 164

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 5  catgcttttccacagctttcttgaactt 32
          ||||||||||||| ||||||||||||||
Sbjct: 1  catgcttttccacggctttcttgaactt 28



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 110 aagctcaagaaagctgtgggagaatatg 137
           |||||||||||||| |||||| ||||||
Sbjct: 137 aagctcaagaaagccgtgggaaaatatg 164




>51740_ptc-miR396g:pmrd
          Length = 168

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 5  catgcttttccacagctttcttgaactt 32
          ||||||||||||| ||||||||||||||
Sbjct: 4  catgcttttccacggctttcttgaactt 31



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 110 aagctcaagaaagctgtgggagaatatg 137
           |||||||||||||| |||||| ||||||
Sbjct: 140 aagctcaagaaagccgtgggaaaatatg 167




>54584_smo-miR396:pmrd
          Length = 168

 Score = 46.1 bits (23), Expect = 7e-06
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 4  tcatgcttttccacagctttcttgaac 30
          |||||||||||||| ||||||||||||
Sbjct: 3  tcatgcttttccacggctttcttgaac 29



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 14  ccacagctttcttgaacttc 33
           ||||||||||||||||||||
Sbjct: 153 ccacagctttcttgaacttc 134




>48374_bna-miR396a:pmrd
          Length = 117

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 12 ttccacagctttcttgaactt 32
          |||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactt 21




>46888_aqc-miR396b:pmrd
          Length = 89

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 12 ttccacagctttcttgaactt 32
          |||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactt 21




>55083_zma-miR396l:pmrd
          Length = 97

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 12 ttccacagctttcttgaact 31
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20




>55082_zma-miR396k:pmrd
          Length = 98

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 12 ttccacagctttcttgaact 31
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20




>55081_zma-miR396j:pmrd
          Length = 98

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 12 ttccacagctttcttgaact 31
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20




>55080_zma-miR396i:pmrd
          Length = 103

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 12 ttccacagctttcttgaact 31
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20




>55079_zma-miR396h:pmrd
          Length = 116

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 12 ttccacagctttcttgaact 31
          ||||||||||||||||||||
Sbjct: 4  ttccacagctttcttgaact 23




>55074_zma-miR396c:pmrd
          Length = 104

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 12 ttccacagctttcttgaact 31
          ||||||||||||||||||||
Sbjct: 4  ttccacagctttcttgaact 23




>55073_zma-miR396b:pmrd
          Length = 136

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 12 ttccacagctttcttgaact 31
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>55072_zma-miR396a:pmrd
          Length = 137

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 12 ttccacagctttcttgaact 31
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>54871_vvi-miR396d:pmrd
          Length = 120

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 12 ttccacagctttcttgaact 31
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>54870_vvi-miR396c:pmrd
          Length = 108

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 12 ttccacagctttcttgaact 31
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>54645_sof-miR396:pmrd
          Length = 134

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 12 ttccacagctttcttgaact 31
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>54486_sbi-miR396b:pmrd
          Length = 128

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 12 ttccacagctttcttgaact 31
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>54485_sbi-miR396a:pmrd
          Length = 125

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 12 ttccacagctttcttgaact 31
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>52079_ptc-miRf10257-akr:pmrd
          Length = 130

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 12 ttccacagctttcttgaact 31
          ||||||||||||||||||||
Sbjct: 9  ttccacagctttcttgaact 28




>51735_ptc-miR396b:pmrd
          Length = 132

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 12 ttccacagctttcttgaact 31
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>51734_ptc-miR396a:pmrd
          Length = 123

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 12 ttccacagctttcttgaact 31
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>48946_osa-miR396b:pmrd
          Length = 116

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 12 ttccacagctttcttgaact 31
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>48945_osa-miR396a:pmrd
          Length = 154

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 12 ttccacagctttcttgaact 31
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>48680_lja-miR396:pmrd
          Length = 108

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 12 ttccacagctttcttgaact 31
          ||||||||||||||||||||
Sbjct: 16 ttccacagctttcttgaact 35




>48578_gma-miR396a:pmrd
          Length = 140

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 12 ttccacagctttcttgaact 31
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>48508_ghr-miR396c:pmrd
          Length = 115

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 12 ttccacagctttcttgaact 31
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20




>48507_ghr-miR396b:pmrd
          Length = 115

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 12 ttccacagctttcttgaact 31
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20




>48485_gcl-miR396a:pmrd
          Length = 101

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 12  ttccacagctttcttgaact 31
           ||||||||||||||||||||
Sbjct: 101 ttccacagctttcttgaact 82




>48110_ath-miRf11010-akr:pmrd
          Length = 165

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 12 ttccacagctttcttgaact 31
          ||||||||||||||||||||
Sbjct: 18 ttccacagctttcttgaact 37




>47008_ath-miR396a:pmrd
          Length = 151

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 12 ttccacagctttcttgaact 31
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>46887_aqc-miR396a:pmrd
          Length = 122

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 12 ttccacagctttcttgaact 31
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20