miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Helianthus annuus GN=RBCS PE=2 SV=1
Length = 178
Score = 55.5 bits (132), Expect = 1e-07
Identities = 25/33 (75%), Positives = 27/33 (81%)
Frame = -2
Query: 193 EKEYPQAWIRIIAFDLVPLVQCIMVFASRPDGF 95
+KEYPQAWIRII FD V VQCIM ASRPDG+
Sbjct: 146 KKEYPQAWIRIIGFDNVRQVQCIMFIASRPDGY 178
>sp|Q39749|RBS7_FLAPR Ribulose bisphosphate carboxylase small chain
7, chloroplastic OS=Flaveria pringlei GN=RBCS7 PE=2 SV=1
Length = 173
Score = 53.1 bits (126), Expect = 5e-07
Identities = 24/33 (72%), Positives = 26/33 (78%)
Frame = -2
Query: 193 EKEYPQAWIRIIAFDLVPLVQCIMVFASRPDGF 95
+KEYPQAWIRII FD V VQCI AS+PDGF
Sbjct: 141 KKEYPQAWIRIIGFDNVRQVQCISFIASKPDGF 173
>sp|Q39747|RBS5_FLAPR Ribulose bisphosphate carboxylase small chain
5, chloroplastic OS=Flaveria pringlei GN=RBCS5 PE=2 SV=1
Length = 173
Score = 53.1 bits (126), Expect = 5e-07
Identities = 24/33 (72%), Positives = 26/33 (78%)
Frame = -2
Query: 193 EKEYPQAWIRIIAFDLVPLVQCIMVFASRPDGF 95
+KEYPQAWIRII FD V VQCI AS+PDGF
Sbjct: 141 KKEYPQAWIRIIGFDNVRQVQCISFIASKPDGF 173
>sp|Q39746|RBS4_FLAPR Ribulose bisphosphate carboxylase small chain
4, chloroplastic OS=Flaveria pringlei GN=RBCS4 PE=2 SV=1
Length = 178
Score = 53.1 bits (126), Expect = 5e-07
Identities = 24/33 (72%), Positives = 26/33 (78%)
Frame = -2
Query: 193 EKEYPQAWIRIIAFDLVPLVQCIMVFASRPDGF 95
+KEYPQAWIRII FD V VQCI AS+PDGF
Sbjct: 146 KKEYPQAWIRIIGFDNVRQVQCISFIASKPDGF 178
>sp|Q39745|RBS3_FLAPR Ribulose bisphosphate carboxylase small chain
3, chloroplastic OS=Flaveria pringlei GN=RBCS3 PE=2 SV=1
Length = 173
Score = 53.1 bits (126), Expect = 5e-07
Identities = 24/33 (72%), Positives = 26/33 (78%)
Frame = -2
Query: 193 EKEYPQAWIRIIAFDLVPLVQCIMVFASRPDGF 95
+KEYPQAWIRII FD V VQCI AS+PDGF
Sbjct: 141 KKEYPQAWIRIIGFDNVRQVQCISFIASKPDGF 173
>sp|Q39744|RBS2_FLAPR Ribulose bisphosphate carboxylase small chain
2, chloroplastic OS=Flaveria pringlei GN=RBCS2 PE=2 SV=1
Length = 178
Score = 51.6 bits (122), Expect = 2e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = -2
Query: 193 EKEYPQAWIRIIAFDLVPLVQCIMVFASRPDGF 95
+KEYPQAWIRII FD V VQCI AS+P+GF
Sbjct: 146 KKEYPQAWIRIIGFDNVRQVQCISFIASKPEGF 178
>sp|Q39748|RBS6_FLAPR Ribulose bisphosphate carboxylase small chain
6, chloroplastic OS=Flaveria pringlei GN=RBCS6 PE=2 SV=1
Length = 173
Score = 50.4 bits (119), Expect = 3e-06
Identities = 23/33 (69%), Positives = 25/33 (75%)
Frame = -2
Query: 193 EKEYPQAWIRIIAFDLVPLVQCIMVFASRPDGF 95
+KEYPQAWIRII FD V VQCI AS+PD F
Sbjct: 141 KKEYPQAWIRIIGFDNVRQVQCISFIASKPDXF 173
>sp|Q39743|RBS1_FLAPR Ribulose bisphosphate carboxylase small chain
1, chloroplastic OS=Flaveria pringlei GN=RBCS1 PE=2 SV=1
Length = 173
Score = 50.4 bits (119), Expect = 3e-06
Identities = 23/33 (69%), Positives = 25/33 (75%)
Frame = -2
Query: 193 EKEYPQAWIRIIAFDLVPLVQCIMVFASRPDGF 95
+KEYPQAWIRII FD V VQCI AS+P GF
Sbjct: 141 KKEYPQAWIRIIGFDNVRQVQCISFIASKPGGF 173
>sp|P07089|RBS_FLATR Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Flaveria trinervia GN=RBCS PE=2 SV=1
Length = 173
Score = 50.1 bits (118), Expect = 4e-06
Identities = 22/33 (66%), Positives = 25/33 (75%)
Frame = -2
Query: 193 EKEYPQAWIRIIAFDLVPLVQCIMVFASRPDGF 95
+KEYPQAWIRII FD V VQC+ AS+P GF
Sbjct: 141 KKEYPQAWIRIIGFDNVRQVQCVSFIASKPTGF 173
>sp|P08706|RBS1_SOLLC Ribulose bisphosphate carboxylase small chain
1, chloroplastic OS=Solanum lycopersicum GN=RBCS-1 PE=2
SV=2
Length = 181
Score = 48.1 bits (113), Expect = 2e-05
Identities = 21/34 (61%), Positives = 25/34 (73%)
Frame = -2
Query: 196 AEKEYPQAWIRIIAFDLVPLVQCIMVFASRPDGF 95
A+K YPQAW+RII FD V VQCI A +P+GF
Sbjct: 148 AKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEGF 181
>sp|P69249|RBS_TOBAC Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Nicotiana tabacum GN=RBCS PE=1 SV=1
Length = 180
Score = 47.4 bits (111), Expect = 3e-05
Identities = 21/34 (61%), Positives = 25/34 (73%)
Frame = -2
Query: 196 AEKEYPQAWIRIIAFDLVPLVQCIMVFASRPDGF 95
A+K YPQAWIRII FD V VQCI A +P+G+
Sbjct: 147 AKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEGY 180
>sp|P26577|RBSC_SOLTU Ribulose bisphosphate carboxylase small chain
2C, chloroplastic OS=Solanum tuberosum GN=RBCS-2C PE=3
SV=1
Length = 180
Score = 47.4 bits (111), Expect = 3e-05
Identities = 21/34 (61%), Positives = 25/34 (73%)
Frame = -2
Query: 196 AEKEYPQAWIRIIAFDLVPLVQCIMVFASRPDGF 95
A+K YPQAWIRII FD V VQCI A +P+G+
Sbjct: 147 AKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEGY 180
>sp|P26576|RBSB_SOLTU Ribulose bisphosphate carboxylase small chain
2B, chloroplastic OS=Solanum tuberosum GN=RBCS-2B PE=3
SV=1
Length = 180
Score = 47.4 bits (111), Expect = 3e-05
Identities = 21/34 (61%), Positives = 25/34 (73%)
Frame = -2
Query: 196 AEKEYPQAWIRIIAFDLVPLVQCIMVFASRPDGF 95
A+K YPQAWIRII FD V VQCI A +P+G+
Sbjct: 147 AKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEGY 180
>sp|P26575|RBSA_SOLTU Ribulose bisphosphate carboxylase small chain
2A, chloroplastic OS=Solanum tuberosum GN=RBCS-2A PE=3
SV=1
Length = 180
Score = 47.4 bits (111), Expect = 3e-05
Identities = 21/34 (61%), Positives = 25/34 (73%)
Frame = -2
Query: 196 AEKEYPQAWIRIIAFDLVPLVQCIMVFASRPDGF 95
A+K YPQAWIRII FD V VQCI A +P+G+
Sbjct: 147 AKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEGY 180
>sp|P32764|RBS3_SOLTU Ribulose bisphosphate carboxylase small chain
3, chloroplastic OS=Solanum tuberosum GN=RBCS-3 PE=3
SV=1
Length = 181
Score = 47.4 bits (111), Expect = 3e-05
Identities = 21/34 (61%), Positives = 25/34 (73%)
Frame = -2
Query: 196 AEKEYPQAWIRIIAFDLVPLVQCIMVFASRPDGF 95
A+K YPQAWIRII FD V VQCI A +P+G+
Sbjct: 148 AKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEGY 181
>sp|P22433|RBS2_NICSY Ribulose bisphosphate carboxylase small chain
S41, chloroplastic OS=Nicotiana sylvestris PE=3 SV=1
Length = 181
Score = 47.4 bits (111), Expect = 3e-05
Identities = 21/34 (61%), Positives = 25/34 (73%)
Frame = -2
Query: 196 AEKEYPQAWIRIIAFDLVPLVQCIMVFASRPDGF 95
A+K YPQAWIRII FD V VQCI A +P+G+
Sbjct: 148 AKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEGY 181
>sp|P69250|RBS1_NICSY Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Nicotiana sylvestris GN=RBCS PE=2 SV=1
Length = 180
Score = 47.4 bits (111), Expect = 3e-05
Identities = 21/34 (61%), Positives = 25/34 (73%)
Frame = -2
Query: 196 AEKEYPQAWIRIIAFDLVPLVQCIMVFASRPDGF 95
A+K YPQAWIRII FD V VQCI A +P+G+
Sbjct: 147 AKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEGY 180
>sp|P26573|RBS8_NICPL Ribulose bisphosphate carboxylase small chain
8B, chloroplastic OS=Nicotiana plumbaginifolia
GN=RBCS-8B PE=3 SV=1
Length = 180
Score = 47.0 bits (110), Expect = 4e-05
Identities = 20/34 (58%), Positives = 25/34 (73%)
Frame = -2
Query: 196 AEKEYPQAWIRIIAFDLVPLVQCIMVFASRPDGF 95
A+K YPQAW+RII FD V VQCI A +P+G+
Sbjct: 147 AKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEGY 180
>sp|P05349|RBS3B_SOLLC Ribulose bisphosphate carboxylase small chain
3B, chloroplastic OS=Solanum lycopersicum GN=RBCS-3B
PE=3 SV=1
Length = 180
Score = 47.0 bits (110), Expect = 4e-05
Identities = 20/34 (58%), Positives = 25/34 (73%)
Frame = -2
Query: 196 AEKEYPQAWIRIIAFDLVPLVQCIMVFASRPDGF 95
A+K YPQAW+RII FD V VQCI A +P+G+
Sbjct: 147 AKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEGY 180
>sp|P07180|RBS3A_SOLLC Ribulose bisphosphate carboxylase small chain
3A/3C, chloroplastic OS=Solanum lycopersicum
GN=RBCS-3A/3C PE=3 SV=1
Length = 180
Score = 47.0 bits (110), Expect = 4e-05
Identities = 20/34 (58%), Positives = 25/34 (73%)
Frame = -2
Query: 196 AEKEYPQAWIRIIAFDLVPLVQCIMVFASRPDGF 95
A+K YPQAW+RII FD V VQCI A +P+G+
Sbjct: 147 AKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEGY 180
>sp|P07179|RBS2A_SOLLC Ribulose bisphosphate carboxylase small chain
2A, chloroplastic OS=Solanum lycopersicum GN=RBCS-2A
PE=2 SV=2
Length = 180
Score = 47.0 bits (110), Expect = 4e-05
Identities = 20/34 (58%), Positives = 25/34 (73%)
Frame = -2
Query: 196 AEKEYPQAWIRIIAFDLVPLVQCIMVFASRPDGF 95
A+K YPQAW+RII FD V VQCI A +P+G+
Sbjct: 147 AKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEGY 180
>sp|P26574|RBS1_SOLTU Ribulose bisphosphate carboxylase small chain
1, chloroplastic OS=Solanum tuberosum GN=RBCS-1 PE=3
SV=1
Length = 181
Score = 46.2 bits (108), Expect = 6e-05
Identities = 20/33 (60%), Positives = 24/33 (72%)
Frame = -2
Query: 193 EKEYPQAWIRIIAFDLVPLVQCIMVFASRPDGF 95
+K YPQAWIRII FD V VQCI A +P+G+
Sbjct: 149 KKSYPQAWIRIIGFDNVRQVQCISFIAYKPEGY 181
>sp|P04714|RBS1_PETHY Ribulose bisphosphate carboxylase small chain
SSU8, chloroplastic OS=Petunia hybrida GN=RBCS PE=3 SV=1
Length = 180
Score = 45.4 bits (106), Expect = 1e-04
Identities = 21/34 (61%), Positives = 23/34 (67%)
Frame = -2
Query: 196 AEKEYPQAWIRIIAFDLVPLVQCIMVFASRPDGF 95
A+K YP AWIRII FD V VQCI A +P GF
Sbjct: 147 AKKAYPNAWIRIIGFDNVRQVQCISFIAYKPPGF 180
>sp|P10647|RBS0_SOLTU Ribulose bisphosphate carboxylase small chain
C, chloroplastic OS=Solanum tuberosum GN=RBCS-C PE=2
SV=1
Length = 181
Score = 45.4 bits (106), Expect = 1e-04
Identities = 20/34 (58%), Positives = 24/34 (70%)
Frame = -2
Query: 196 AEKEYPQAWIRIIAFDLVPLVQCIMVFASRPDGF 95
A+ YPQAWIRII FD V VQCI A +P+G+
Sbjct: 148 AKNAYPQAWIRIIGFDNVRQVQCISFIAYKPEGY 181
>sp|P04715|RBS2_PETHY Ribulose bisphosphate carboxylase small chain
SSU11A, chloroplastic OS=Petunia hybrida GN=RBCS PE=3
SV=1
Length = 180
Score = 44.3 bits (103), Expect = 2e-04
Identities = 20/34 (58%), Positives = 23/34 (67%)
Frame = -2
Query: 196 AEKEYPQAWIRIIAFDLVPLVQCIMVFASRPDGF 95
A+K YP AWIRII FD V VQCI A +P G+
Sbjct: 147 AKKAYPNAWIRIIGFDNVRQVQCISFIAYKPPGY 180
>sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Capsicum annuum GN=RBCS PE=2 SV=1
Length = 187
Score = 43.9 bits (102), Expect = 3e-04
Identities = 20/32 (62%), Positives = 23/32 (71%)
Frame = -2
Query: 196 AEKEYPQAWIRIIAFDLVPLVQCIMVFASRPD 101
A+K YPQAWIRII FD V VQCI A +P+
Sbjct: 147 AKKAYPQAWIRIIGFDNVRQVQCISFIAYKPE 178
>sp|P31333|RBS_GOSHI Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Gossypium hirsutum GN=RBCS PE=3 SV=2
Length = 182
Score = 43.5 bits (101), Expect = 4e-04
Identities = 20/35 (57%), Positives = 24/35 (68%)
Frame = -2
Query: 199 NAEKEYPQAWIRIIAFDLVPLVQCIMVFASRPDGF 95
N +KEYP A+IRII FD V VQCI A +P G+
Sbjct: 148 NCKKEYPNAFIRIIGFDNVRQVQCISFIAYKPKGY 182
