miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|Q8BHB4|WDR3_MOUSE WD repeat_field-containing protein 3 OS=Mus musculus
GN=Wdr3 PE=2 SV=1
Length = 942
Score = 60.8 bits (146), Expect = 3e-09
Identities = 25/53 (47%), Positives = 38/53 (71%)
Frame = +1
Query: 1 KGGTLEFIDVRSGTCVEVVEAHGGSVQSIALTPDGTGFLTGSADHDIKFWEFQ 159
K G L+ D+ SGT +E + AH G++ S++L+PD GF+TG AD +KFW+F+
Sbjct: 473 KTGNLQLYDLASGTLLETIAAHDGALWSMSLSPDQRGFVTGGADKAVKFWDFE 525
>sp|Q9UNX4|WDR3_HUMAN WD repeat_field-containing protein 3 OS=Homo sapiens
GN=WDR3 PE=1 SV=1
Length = 943
Score = 60.5 bits (145), Expect = 3e-09
Identities = 24/53 (45%), Positives = 38/53 (71%)
Frame = +1
Query: 1 KGGTLEFIDVRSGTCVEVVEAHGGSVQSIALTPDGTGFLTGSADHDIKFWEFQ 159
K G L+ D+ SG +E ++AH G++ S++L+PD GF+TG AD +KFW+F+
Sbjct: 474 KTGKLQLYDLASGNLLETIDAHDGALWSMSLSPDQRGFVTGGADKSVKFWDFE 526
>sp|Q00808|HETE1_PODAN Vegetative incompatibility protein HET-E-1
OS=Podospora anserina (strain S / DSM 980 / FGSC 10383)
GN=HET-E1 PE=4 SV=1
Length = 1356
Score = 58.5 bits (140), Expect = 1e-08
Identities = 24/48 (50%), Positives = 32/48 (66%)
Frame = +1
Query: 10 TLEFIDVRSGTCVEVVEAHGGSVQSIALTPDGTGFLTGSADHDIKFWE 153
T++ D SGTC + +E HGG VQS+A +PDG +GS DH IK W+
Sbjct: 906 TIKIWDAASGTCTQTLEGHGGRVQSVAFSPDGQRVASGSDDHTIKIWD 953
Score = 57.8 bits (138), Expect = 2e-08
Identities = 24/49 (48%), Positives = 33/49 (67%)
Frame = +1
Query: 7 GTLEFIDVRSGTCVEVVEAHGGSVQSIALTPDGTGFLTGSADHDIKFWE 153
GT++ D SGTC + +E HGG VQS+A +PDG +GS+D IK W+
Sbjct: 1157 GTIKIWDAASGTCTQTLEGHGGWVQSVAFSPDGQRVASGSSDKTIKIWD 1205
Score = 56.2 bits (134), Expect = 6e-08
Identities = 23/48 (47%), Positives = 31/48 (64%)
Frame = +1
Query: 10 TLEFIDVRSGTCVEVVEAHGGSVQSIALTPDGTGFLTGSADHDIKFWE 153
T++ D SGTC + +E HGG VQS+ +PDG +GS DH IK W+
Sbjct: 1032 TIKIWDTASGTCTQTLEGHGGWVQSVVFSPDGQRVASGSDDHTIKIWD 1079
Score = 56.2 bits (134), Expect = 6e-08
Identities = 23/48 (47%), Positives = 33/48 (68%)
Frame = +1
Query: 10 TLEFIDVRSGTCVEVVEAHGGSVQSIALTPDGTGFLTGSADHDIKFWE 153
T++ D SGTC + +E HGG VQS+A +PDG +GS+D+ IK W+
Sbjct: 1200 TIKIWDTASGTCTQTLEGHGGWVQSVAFSPDGQRVASGSSDNTIKIWD 1247
Score = 54.7 bits (130), Expect = 2e-07
Identities = 23/49 (46%), Positives = 31/49 (63%)
Frame = +1
Query: 7 GTLEFIDVRSGTCVEVVEAHGGSVQSIALTPDGTGFLTGSADHDIKFWE 153
GT++ D SGTC + +E HGG V S+A +PDG +GS D IK W+
Sbjct: 1115 GTIKIWDAASGTCTQTLEGHGGWVHSVAFSPDGQRVASGSIDGTIKIWD 1163
Score = 54.3 bits (129), Expect = 2e-07
Identities = 23/48 (47%), Positives = 31/48 (64%)
Frame = +1
Query: 10 TLEFIDVRSGTCVEVVEAHGGSVQSIALTPDGTGFLTGSADHDIKFWE 153
T++ D SGTC + +E HGGSV S+A +PDG +GS D IK W+
Sbjct: 990 TIKIWDTASGTCTQTLEGHGGSVWSVAFSPDGQRVASGSDDKTIKIWD 1037
Score = 52.8 bits (125), Expect = 7e-07
Identities = 22/48 (45%), Positives = 30/48 (62%)
Frame = +1
Query: 10 TLEFIDVRSGTCVEVVEAHGGSVQSIALTPDGTGFLTGSADHDIKFWE 153
T++ D SGTC + +E HG SV S+A +PDG +GS D IK W+
Sbjct: 948 TIKIWDAASGTCTQTLEGHGSSVLSVAFSPDGQRVASGSGDKTIKIWD 995
Score = 50.8 bits (120), Expect = 3e-06
Identities = 22/48 (45%), Positives = 30/48 (62%)
Frame = +1
Query: 10 TLEFIDVRSGTCVEVVEAHGGSVQSIALTPDGTGFLTGSADHDIKFWE 153
T++ D SGTC + +E HG SV S+A +PDG +GS D IK W+
Sbjct: 1074 TIKIWDAVSGTCTQTLEGHGDSVWSVAFSPDGQRVASGSIDGTIKIWD 1121
Score = 46.6 bits (109), Expect = 5e-05
Identities = 21/48 (43%), Positives = 29/48 (60%)
Frame = +1
Query: 10 TLEFIDVRSGTCVEVVEAHGGSVQSIALTPDGTGFLTGSADHDIKFWE 153
T++ D SGT + +E HGGSV S+A +PD +GS D IK W+
Sbjct: 864 TIKIWDTASGTGTQTLEGHGGSVWSVAFSPDRERVASGSDDKTIKIWD 911
Score = 42.4 bits (98), Expect = 0.001
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +1
Query: 10 TLEFIDVRSGTCVEVVEAHGGSVQSIALTPDGTGFLTGSADHDIKFWE 153
T+ ++ C + +E HG SV S+A + DG +GS D IK W+
Sbjct: 822 TISVVEAEWNACTQTLEGHGSSVLSVAFSADGQRVASGSDDKTIKIWD 869
>sp|P87177|YB1C_SCHPO Uncharacterized WD repeat_field-containing protein
C3D6.12 OS=Schizosaccharomyces pombe (strain ATCC 38366
/ 972) GN=SPBC3D6.12 PE=1 SV=1
Length = 922
Score = 53.1 bits (126), Expect = 5e-07
Identities = 22/53 (41%), Positives = 33/53 (62%)
Frame = +1
Query: 1 KGGTLEFIDVRSGTCVEVVEAHGGSVQSIALTPDGTGFLTGSADHDIKFWEFQ 159
K G LE D+ S + +E ++AH G++ +A+ DGT F T SADH +K W +
Sbjct: 455 KSGELEVYDIASSSLIERIQAHDGAIWDLAVGHDGTYFATASADHTVKLWSLK 507
>sp|Q54S79|WDR3_DICDI WD repeat_field-containing protein 3 homolog
OS=Dictyostelium discoideum GN=wdr3 PE=3 SV=1
Length = 942
Score = 52.4 bits (124), Expect = 9e-07
Identities = 24/53 (45%), Positives = 34/53 (64%)
Frame = +1
Query: 1 KGGTLEFIDVRSGTCVEVVEAHGGSVQSIALTPDGTGFLTGSADHDIKFWEFQ 159
K GT+E ++ S V ++AH GSV S+ LTPD G +G AD +KFW+F+
Sbjct: 455 KTGTIEVFELASAARVASIKAHEGSVWSLVLTPDLRGVTSGGADKLVKFWDFE 507
>sp|Q12220|UTP12_YEAST U3 small nucleolar RNA-associated protein 12
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=DIP2 PE=1 SV=1
Length = 943
Score = 48.5 bits (114), Expect = 1e-05
Identities = 21/54 (38%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Frame = +1
Query: 1 KGGTLEFIDVRSGTCVEVVE-AHGGSVQSIALTPDGTGFLTGSADHDIKFWEFQ 159
+ G L+ D+ S + ++ +E AH ++ S+ LT DG +TGSAD +KFW+F+
Sbjct: 450 RNGELQLFDLASSSLLDTIEDAHDAAIWSLDLTSDGKRLVTGSADKTVKFWDFK 503
>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat_field-containing protein
alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576)
GN=alr2800 PE=4 SV=1
Length = 1258
Score = 46.6 bits (109), Expect = 5e-05
Identities = 17/48 (35%), Positives = 30/48 (62%)
Frame = +1
Query: 10 TLEFIDVRSGTCVEVVEAHGGSVQSIALTPDGTGFLTGSADHDIKFWE 153
T++ D++ GTC++ + H V+ +A +PDG + +ADH IK W+
Sbjct: 749 TIKLWDIQDGTCLQTLTGHTDWVRCVAFSPDGNTLASSAADHTIKLWD 796
Score = 44.7 bits (104), Expect = 2e-04
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = +1
Query: 10 TLEFIDVRSGTCVEVVEAHGGSVQSIALTPDGTGFLTGSADHDIKFWEF 156
T++ DV G C+ +++H G V+S+A + DG +GS D IK W +
Sbjct: 791 TIKLWDVSQGKCLRTLKSHTGWVRSVAFSADGQTLASGSGDRTIKIWNY 839
>sp|Q9UUG8|TUP12_SCHPO Transcriptional repressor tup12
OS=Schizosaccharomyces pombe (strain ATCC 38366 / 972)
GN=tup12 PE=1 SV=1
Length = 586
Score = 45.8 bits (107), Expect = 8e-05
Identities = 21/42 (50%), Positives = 27/42 (64%)
Frame = +1
Query: 34 SGTCVEVVEAHGGSVQSIALTPDGTGFLTGSADHDIKFWEFQ 159
SGT VE + H SV S+A +PDG ++GS D+ IK WE Q
Sbjct: 447 SGTLVEQLHGHEESVYSVAFSPDGKYLVSGSLDNTIKLWELQ 488
>sp|Q09715|TUP11_SCHPO Transcriptional repressor tup11
OS=Schizosaccharomyces pombe (strain ATCC 38366 / 972)
GN=tup11 PE=1 SV=1
Length = 614
Score = 45.8 bits (107), Expect = 8e-05
Identities = 23/42 (54%), Positives = 27/42 (64%)
Frame = +1
Query: 34 SGTCVEVVEAHGGSVQSIALTPDGTGFLTGSADHDIKFWEFQ 159
SGT VE +E H SV SIA +PD + L+GS D IK WE Q
Sbjct: 473 SGTLVERLEGHKESVYSIAFSPDSSILLSGSLDKTIKVWELQ 514
>sp|Q70M86|STRN_SORMK Striatin Pro11 OS=Sordaria macrospora (strain
ATCC MYA-333 / DSM 997 / K(L3346) / K-hell) GN=pro11
PE=3 SV=1
Length = 845
Score = 44.7 bits (104), Expect = 2e-04
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = +1
Query: 13 LEFIDVRSGTCVEVVEAHGGSVQSIALTPDGTGFLTGSADHDIKFWEFQ 159
+ F D SG C + AH GSV S++L+PDG ++ D ++FW +
Sbjct: 752 IRFFDANSGQCTYNMLAHPGSVSSLSLSPDGRELVSAGHDMSLRFWSLE 800
>sp|P78706|RCO1_NEUCR Transcriptional repressor rco-1 OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=rco-1 PE=4 SV=2
Length = 604
Score = 43.1 bits (100), Expect = 5e-04
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = +1
Query: 31 RSGTCVEVVEAHGGSVQSIALTPDGTGFLTGSADHDIKFWE 153
+ G C++ E H V S+ALTPD L+GS D ++FW+
Sbjct: 513 KGGRCIKTFEGHRDFVLSVALTPDSQWVLSGSKDRGVQFWD 553
>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat_field-containing protein
alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576)
GN=alr3466 PE=4 SV=1
Length = 1526
Score = 42.7 bits (99), Expect = 7e-04
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +1
Query: 10 TLEFIDVRSGTCVEVVEAHGGSVQSIALTPDGTGFLTGSADHDIKFWE 153
T+ D+ SG C+ + + H G V S+A DG+ TGS D ++ W+
Sbjct: 971 TVRLWDISSGECLYIFQGHTGWVYSVAFNLDGSMLATGSGDQTVRLWD 1018
>sp|Q8W1K8|MUT11_CHLRE Protein Mut11 OS=Chlamydomonas reinhardtii
GN=Mut11 PE=2 SV=1
Length = 370
Score = 42.7 bits (99), Expect = 7e-04
Identities = 22/50 (44%), Positives = 28/50 (56%)
Frame = +1
Query: 10 TLEFIDVRSGTCVEVVEAHGGSVQSIALTPDGTGFLTGSADHDIKFWEFQ 159
TL DVRSG C+ V AH V S A + DG+ +T S D I+ W+ Q
Sbjct: 148 TLRLWDVRSGRCLREVPAHSDPVTSAAFSYDGSMVVTSSLDGLIRLWDTQ 197
