miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9SGS5|Y1607_ARATH Uncharacterized protein At1g76070
           OS=Arabidopsis thaliana GN=At1g76070 PE=1 SV=1
          Length = 272

 Score = 66.6 bits (161), Expect = 1e-10
 Identities = 58/198 (29%), Positives = 86/198 (43%), Gaps = 23/198 (11%)
 Frame = +2

Query: 44  QSKLRNKFMKAITITFQNAPFSPGRDHKFRSENSNTKWGAKTHAVGKGFSGPMVTMIPYE 223
           ++KL     KA++   +  PFSPGRD    + ++ T       A    FSGPMV ++P  
Sbjct: 15  KNKLLKMLPKAMSFGHRVPPFSPGRDLHHNNHHNYTA------ANKMFFSGPMVPLVPNA 68

Query: 224 ARRKPKDGGGNETQEPTSPKISCMGQXXXXXXXXXXXXXXDL---FTPKV---------- 364
           AR + ++       EPTSPK+SC+GQ                     PK+          
Sbjct: 69  ARVR-RNKSDAVWDEPTSPKVSCIGQIKLGKSKCPTGKKNKAPSSLIPKISKTSTSSLTK 127

Query: 365 -DTEVKRSKFQRIFS-QRSKAKFAERKSDGSGF--VDE------GNNKAPPMGDMRRFAS 514
            D + + SK + IFS   +  +   RKS  +     DE           P +G M++FAS
Sbjct: 128 EDEKGRLSKIKSIFSFSPASGRNTSRKSHPTAVSAADEHPVTVVSTAAVPSLGQMKKFAS 187

Query: 515 GREAFSKFDWKAVIEPEE 568
            R+A   FDW   ++ EE
Sbjct: 188 SRDALGDFDWAVEMKHEE 205