miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q0J952|C3H32_ORYSJ Zinc finger CCCH domain-containing protein 32
           OS=Oryza sativa subsp. japonica GN=Os04g0671800 PE=2
           SV=1
          Length = 711

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 24/27 (88%), Positives = 25/27 (92%)
 Frame = +1

Query: 10  APEEDELLKRNTDCVYFLASPLTCKKG 90
           APEE E L+RNTDCVYFLASPLTCKKG
Sbjct: 25  APEE-EALRRNTDCVYFLASPLTCKKG 50




>sp|Q9ZUM0|C3H17_ARATH Zinc finger CCCH domain-containing protein 17
           OS=Arabidopsis thaliana GN=At2g02160 PE=1 SV=1
          Length = 669

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 20/30 (66%), Positives = 25/30 (83%)
 Frame = +1

Query: 1   QSTAPEEDELLKRNTDCVYFLASPLTCKKG 90
           ++ +  E++ LK NTDCVYFLASPLTCKKG
Sbjct: 19  ETVSSAEEDALKWNTDCVYFLASPLTCKKG 48




>sp|Q6K977|C3H19_ORYSJ Zinc finger CCCH domain-containing protein
          19 OS=Oryza sativa subsp. japonica GN=Os02g0831100 PE=2
          SV=2
          Length = 647

 Score = 42.7 bits (99), Expect = 7e-04
 Identities = 17/24 (70%), Positives = 21/24 (87%)
 Frame = +1

Query: 19 EDELLKRNTDCVYFLASPLTCKKG 90
          E+   +R+TDC+YFLASPLTCKKG
Sbjct: 12 EEARRRRSTDCIYFLASPLTCKKG 35