miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q8VYP6|NOL9_ARATH Polynucleotide 5'-hydroxyl-kinase NOL9
           OS=Arabidopsis thaliana GN=At5g11010 PE=2 SV=1
          Length = 368

 Score = 62.0 bits (149), Expect(2) = 8e-11
 Identities = 29/52 (55%), Positives = 40/52 (76%), Gaps = 4/52 (7%)
 Frame = -3

Query: 149 IASASGGDITTFICGPKNSGKSTFSRHLLQLLLPRY----FLDSDVGQPEFT 6
           ++ +S   +   +CGPKNSGKSTFSR+L+++LL RY    +LD+DVGQPEFT
Sbjct: 22  VSCSSLQPVIALVCGPKNSGKSTFSRNLVEVLLQRYKRVAYLDTDVGQPEFT 73



 Score = 23.9 bits (50), Expect(2) = 8e-11
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -2

Query: 186 YIPEEWSEAAATHS 145
           +IPEEWS AA++ S
Sbjct: 10  FIPEEWSNAASSVS 23


>sp|Q0CKU1|GRC3_ASPTN Polynucleotide 5'-hydroxyl-kinase grc3
           OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
           GN=grc3 PE=3 SV=1
          Length = 815

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 32/61 (52%), Positives = 34/61 (55%), Gaps = 14/61 (22%)
 Frame = -3

Query: 143 SASGGDITTFICGPKNSGKSTFSRHLLQLLL-------PRY-------FLDSDVGQPEFT 6
           S  GG +   ICGPK SGKSTFSR+LL  LL       P Y       FLD D GQPEF 
Sbjct: 314 SQKGGKLRALICGPKGSGKSTFSRYLLNHLLSPAPQTEPSYCNTDGVAFLDLDPGQPEFA 373

Query: 5   P 3
           P
Sbjct: 374 P 374




>sp|A2QNQ8|GRC3_ASPNC Polynucleotide 5'-hydroxyl-kinase grc3
           OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
           GN=grc3 PE=3 SV=2
          Length = 819

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 32/61 (52%), Positives = 35/61 (57%), Gaps = 14/61 (22%)
 Frame = -3

Query: 143 SASGGDITTFICGPKNSGKSTFSRHLLQLLL-------PRY-------FLDSDVGQPEFT 6
           S  GG + T ICGPK SGKSTFSR+LL  LL        +Y       FLD D GQPEF 
Sbjct: 321 SQRGGRLKTLICGPKGSGKSTFSRYLLNHLLSPAPQTETKYFNTDGVAFLDLDPGQPEFA 380

Query: 5   P 3
           P
Sbjct: 381 P 381




>sp|A1CYR9|GRC3_NEOFI Polynucleotide 5'-hydroxyl-kinase grc3
           OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
           FGSC A1164 / NRRL 181) GN=grc3 PE=3 SV=1
          Length = 835

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 30/61 (49%), Positives = 33/61 (54%), Gaps = 14/61 (22%)
 Frame = -3

Query: 143 SASGGDITTFICGPKNSGKSTFSRHLLQLLLPR--------------YFLDSDVGQPEFT 6
           S  GG +   ICGPK SGKSTFSR+LL  LL                 FLD D GQPEF+
Sbjct: 320 SQRGGRLKVLICGPKASGKSTFSRYLLNHLLSPAPQTENNHRNTDGVAFLDLDPGQPEFS 379

Query: 5   P 3
           P
Sbjct: 380 P 380




>sp|Q2U0C4|GRC3_ASPOR Polynucleotide 5'-hydroxyl-kinase grc3
           OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
           GN=grc3 PE=3 SV=2
          Length = 831

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 30/61 (49%), Positives = 33/61 (54%), Gaps = 14/61 (22%)
 Frame = -3

Query: 143 SASGGDITTFICGPKNSGKSTFSRHLLQLLLPR--------------YFLDSDVGQPEFT 6
           S  GG +   ICGPK SGKSTFSR+LL  LL                 FLD D GQPEF+
Sbjct: 323 SQRGGRLKALICGPKASGKSTFSRYLLNHLLSPAPQTETNYCNTDGVAFLDLDPGQPEFS 382

Query: 5   P 3
           P
Sbjct: 383 P 383




>sp|Q4WID9|GRC3_ASPFU Polynucleotide 5'-hydroxyl-kinase grc3
           OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
           CBS 101355 / FGSC A1100) GN=grc3 PE=3 SV=2
          Length = 841

 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 30/61 (49%), Positives = 32/61 (52%), Gaps = 14/61 (22%)
 Frame = -3

Query: 143 SASGGDITTFICGPKNSGKSTFSRHLLQLLLPR--------------YFLDSDVGQPEFT 6
           S  GG +   ICGPK SGKSTFSR+LL  LL                 FLD D GQPEF 
Sbjct: 326 SQRGGRLKVLICGPKASGKSTFSRYLLNHLLSPAPQTENNHRNTDGVAFLDLDPGQPEFC 385

Query: 5   P 3
           P
Sbjct: 386 P 386




>sp|A1CFB5|GRC3_ASPCL Polynucleotide 5'-hydroxyl-kinase grc3
           OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
           DSM 816 / NCTC 3887 / NRRL 1) GN=grc3 PE=3 SV=1
          Length = 839

 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 29/61 (47%), Positives = 32/61 (52%), Gaps = 14/61 (22%)
 Frame = -3

Query: 143 SASGGDITTFICGPKNSGKSTFSRHLLQLLLPR--------------YFLDSDVGQPEFT 6
           S   G +   ICGPK SGKSTFSR+LL  LL                 FLD D GQPEF+
Sbjct: 321 SQRNGQLRVLICGPKASGKSTFSRYLLNHLLSPAPQTETDFRNTDGVAFLDLDPGQPEFS 380

Query: 5   P 3
           P
Sbjct: 381 P 381




>sp|Q5B4D1|GRC3_EMENI Polynucleotide 5'-hydroxyl-kinase grc3
           OS=Emericella nidulans GN=grc3 PE=3 SV=1
          Length = 816

 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 28/63 (44%), Positives = 31/63 (49%), Gaps = 14/63 (22%)
 Frame = -3

Query: 149 IASASGGDITTFICGPKNSGKSTFSRHLLQLLLPR--------------YFLDSDVGQPE 12
           + S   G +   ICGPK SGKSTF R+LL  LL                 FLD D GQPE
Sbjct: 318 VLSQRAGRLQVLICGPKASGKSTFGRYLLNHLLSPAPQPELNYTNTDGVAFLDLDPGQPE 377

Query: 11  FTP 3
           F P
Sbjct: 378 FLP 380




>sp|Q9UU96|GRC3_SCHPO Polynucleotide 5'-hydroxyl-kinase grc3
           OS=Schizosaccharomyces pombe (strain ATCC 38366 / 972)
           GN=grc3 PE=2 SV=1
          Length = 736

 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 4/41 (9%)
 Frame = -3

Query: 113 ICGPKNSGKSTFSRHLLQLLLPRY----FLDSDVGQPEFTP 3
           +CGPK SGKS+FSR++   LL +Y    +LD D GQPE  P
Sbjct: 336 VCGPKGSGKSSFSRYITNRLLQQYRHIAYLDLDPGQPEVVP 376




>sp|Q54Z27|NOL9_DICDI Polynucleotide 5'-hydroxyl-kinase nol9
           OS=Dictyostelium discoideum GN=nol9 PE=3 SV=1
          Length = 683

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 21/45 (46%), Positives = 30/45 (66%), Gaps = 4/45 (8%)
 Frame = -3

Query: 125 ITTFICGPKNSGKSTFSRHLLQLLLPRY----FLDSDVGQPEFTP 3
           ++   CG +N GKSTF+R L+  LL +Y    F+++D GQ EFTP
Sbjct: 271 LSILTCGERNVGKSTFNRILINKLLKKYTHIIFIETDTGQTEFTP 315




>sp|Q4IR18|GRC3_GIBZE Polynucleotide 5'-hydroxyl-kinase GRC3
           OS=Gibberella zeae (strain PH-1 / FGSC 9075 / NRRL
           31084) GN=GRC3 PE=3 SV=1
          Length = 796

 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 24/51 (47%), Positives = 29/51 (56%), Gaps = 10/51 (19%)
 Frame = -3

Query: 125 ITTFICGPKNSGKSTFSRHLLQLLLPR----------YFLDSDVGQPEFTP 3
           ++T ICGPK++GKSTFSR  L  LL              LD D GQPE+ P
Sbjct: 279 LSTLICGPKSAGKSTFSRLFLNGLLTDRSQKQGARSVVILDLDPGQPEYAP 329