miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|O75643|U520_HUMAN U5 small nuclear ribonucleoprotein 200 kDa
            helicase OS=Homo sapiens GN=SNRNP200 PE=1 SV=2
          Length = 2136

 Score = 60.5 bits (145), Expect = 3e-09
 Identities = 26/30 (86%), Positives = 29/30 (96%)
 Frame = +2

Query: 5    PFFTSEHIKRCTEKGVESIFDIMEMEDEDR 94
            P FTSEHIKRCT+KGVES+FDIMEMEDE+R
Sbjct: 1964 PHFTSEHIKRCTDKGVESVFDIMEMEDEER 1993




>sp|Q9VUV9|U520_DROME Putative U5 small nuclear ribonucleoprotein 200
            kDa helicase OS=Drosophila melanogaster GN=CG5931 PE=2
            SV=4
          Length = 2142

 Score = 49.3 bits (116), Expect = 7e-06
 Identities = 20/30 (66%), Positives = 26/30 (86%)
 Frame = +2

Query: 5    PFFTSEHIKRCTEKGVESIFDIMEMEDEDR 94
            P F+ E +KRCTEK +E++FDIME+EDEDR
Sbjct: 1968 PHFSPEIVKRCTEKKIETVFDIMELEDEDR 1997