miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00690;MIR408;AC235367.1/71602-71757 3847:Glycine max (soybean)
          Length = 156

 Score = 77.8 bits (39), Expect = 6e-14
 Identities = 42/43 (97%)
 Strand = Plus / Plus

                                                      
Query: 149 atctattgtggctacgctcatgcactgcctcttccctggctct 191
           |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 99  atctgttgtggctacgctcatgcactgcctcttccctggctct 141




>RF00690;MIR408;AC136840.24/84429-84307 3880:Medicago truncatula
           (barrel medic)
          Length = 123

 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                               
Query: 154 ttgtggctacgctcatgcactgcctcttccctggct 189
           |||||||| | |||||||||||||||||||||||||
Sbjct: 70  ttgtggctccactcatgcactgcctcttccctggct 105




>RF00690;MIR408;ABIM01026620.1/11572-11449 3649:Carica papaya
           (papaya)
          Length = 124

 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 169 tgcactgcctcttccctggctctctc 194
           ||||||||||||||||||||||||||
Sbjct: 86  tgcactgcctcttccctggctctctc 111




>RF00690;MIR408;AM434998.2/53932-53808 29760:Vitis vinifera
          Length = 125

 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 167 catgcactgcctcttccctggctct 191
           |||||||||||||||||||||||||
Sbjct: 86  catgcactgcctcttccctggctct 110




>RF00690;MIR408;AF419552.1/68-193 3702:Arabidopsis thaliana (thale
           cress)
          Length = 126

 Score = 48.1 bits (24), Expect = 5e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 167 catgcactgcctcttccctggctc 190
           ||||||||||||||||||||||||
Sbjct: 86  catgcactgcctcttccctggctc 109




>RF00690;MIR408;BABK01104206.1/188-52 34305:Lotus japonicus
          Length = 137

 Score = 48.1 bits (24), Expect = 5e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 165 ctcatgcactgcctcttccctggc 188
           ||||||||||||||||||||||||
Sbjct: 95  ctcatgcactgcctcttccctggc 118




>RF00690;MIR408;AARH01001232.1/22611-22493 3694:Populus trichocarpa
          Length = 119

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 167 catgcactgcctcttccctggct 189
           |||||||||||||||||||||||
Sbjct: 79  catgcactgcctcttccctggct 101




>RF00690;MIR408;EU947091.1/49-229 4577:Zea mays
          Length = 181

 Score = 44.1 bits (22), Expect = 8e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 169 tgcactgcctcttccctggctc 190
           ||||||||||||||||||||||
Sbjct: 143 tgcactgcctcttccctggctc 164




>RF00690;MIR408;EU976649.1/72-263 4577:Zea mays
          Length = 192

 Score = 44.1 bits (22), Expect = 8e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 169 tgcactgcctcttccctggctc 190
           ||||||||||||||||||||||
Sbjct: 154 tgcactgcctcttccctggctc 175




>RF00690;MIR408;EU972352.1/61-243 4577:Zea mays
          Length = 183

 Score = 44.1 bits (22), Expect = 8e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 169 tgcactgcctcttccctggctc 190
           ||||||||||||||||||||||
Sbjct: 145 tgcactgcctcttccctggctc 166




>RF00690;MIR408;AP008207.1/12284551-12284732 39947:Oryza sativa
           Japonica Group
          Length = 182

 Score = 44.1 bits (22), Expect = 8e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 169 tgcactgcctcttccctggctc 190
           ||||||||||||||||||||||
Sbjct: 143 tgcactgcctcttccctggctc 164