miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU183492.1/3479-3389 37682:Aegilops tauschii
Length = 91
Score = 58.0 bits (29), Expect = 1e-08
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 6 tggtactccctctgtaaacaaatataggagtgtttag 42
|||||||||||||||||| ||||||| ||||||||||
Sbjct: 90 tggtactccctctgtaaagaaatataagagtgtttag 54
>RF00906;MIR1122;EU835198.1/56667-56575 85692:Triticum turgidum
subsp. dicoccoides
Length = 93
Score = 54.0 bits (27), Expect = 2e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 8 gtactccctctgtaaacaaatataggagtgtttag 42
||||||||||||||||| |||||| ||||||||||
Sbjct: 4 gtactccctctgtaaactaatataagagtgtttag 38
>RF00906;MIR1122;FJ436985.1/28643-28733 4565:Triticum aestivum
(bread wheat)
Length = 91
Score = 54.0 bits (27), Expect = 2e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 8 gtactccctctgtaaacaaatataggagtgtttag 42
||||||||||||||||| |||||| ||||||||||
Sbjct: 4 gtactccctctgtaaactaatataagagtgtttag 38
>RF00906;MIR1122;AK250453.1/820-743 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 78
Score = 48.1 bits (24), Expect = 1e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaacaaatataggagtgttt 40
|||||||||||||||| |||||| ||||||||
Sbjct: 5 tactccctctgtaaactaatataagagtgttt 36
>RF00906;MIR1122;EF067844.1/459123-459031 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 48.1 bits (24), Expect = 1e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 8 gtactccctctgtaaacaaatataggagtgtttagtttac 47
||||||||||||||||| |||||| |||| ||||| ||||
Sbjct: 4 gtactccctctgtaaactaatataagagtatttagattac 43
>RF00906;MIR1122;EU200767.1/3655-3563 37682:Aegilops tauschii
Length = 93
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 gtactccctctgtaaacaaatata 31
||||||||||||||||||||||||
Sbjct: 4 gtactccctctgtaaacaaatata 27
>RF00906;MIR1122;EU660896.1/71755-71663 4572:Triticum urartu
Length = 93
Score = 46.1 bits (23), Expect = 5e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 8 gtactccctctgtaaacaaatataggagtgtttag 42
||||||||||| ||||| |||||| ||||||||||
Sbjct: 4 gtactccctctataaaccaatataagagtgtttag 38
>RF00906;MIR1122;AM000057.1/1342-1250 4513:Hordeum vulgare
Length = 93
Score = 46.1 bits (23), Expect = 5e-05
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaacaaatataggagtgtttagtttac 47
|||||||||||||||| |||||| ||| |||||| ||||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttagattac 43
>RF00906;MIR1122;EU282676.1/869-732 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 138
Score = 46.1 bits (23), Expect = 5e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 8 gtactccctctgtaaacaaatataggagtgtttag 42
||||||||||||||||| |||||| ||| ||||||
Sbjct: 4 gtactccctctgtaaactaatataagagcgtttag 38
>RF00906;MIR1122;AF277253.1/801-887 58935:Australopyrum velutinum
Length = 87
Score = 46.1 bits (23), Expect = 5e-05
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 8 gtactccctctgtaaacaaatataggagtgtttag 42
|||||||||||||||| ||||||| ||| ||||||
Sbjct: 84 gtactccctctgtaaagaaatataagagcgtttag 50
Score = 44.1 bits (22), Expect = 2e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaacaaatataggagtgtttag 42
||||||||||||||| ||||||| ||| ||||||
Sbjct: 5 tactccctctgtaaagaaatataagagcgtttag 38
>RF00906;MIR1122;FJ436986.1/53497-53587 37682:Aegilops tauschii
Length = 91
Score = 46.1 bits (23), Expect = 5e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 8 gtactccctctgtaaacaaatataggagtgtttag 42
||||||||||||||||| |||||| |||||||||
Sbjct: 4 gtactccctctgtaaactaatataaaagtgtttag 38
>RF00906;MIR1122;AJ302096.1/1385-1477 4573:Aegilops speltoides
Length = 93
Score = 46.1 bits (23), Expect = 5e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 8 gtactccctctgtaaacaaatataggagtgtttag 42
||||||||||||||||| |||||| ||| ||||||
Sbjct: 4 gtactccctctgtaaactaatataagagcgtttag 38
>RF00906;MIR1122;X83518.1/7623-7532 4513:Hordeum vulgare
Length = 92
Score = 44.1 bits (22), Expect = 2e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 9 tactccctctgtaaacaaatataggagtgtttag 42
|||||||||||||||| |||||| ||| ||||||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttag 38
>RF00906;MIR1122;EU626553.1/72905-73004 4572:Triticum urartu
Length = 100
Score = 42.1 bits (21), Expect = 8e-04
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 8 gtactccctctgtaaacaaatataggagtgttt 40
||||||||||||||||| |||||| ||| ||||
Sbjct: 97 gtactccctctgtaaactaatataagagcgttt 65
