miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AJ507395.1/7785-7899 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 115

 Score = 73.8 bits (37), Expect = 4e-13
 Identities = 40/41 (97%)
 Strand = Plus / Minus

                                                    
Query: 9   gtacttcctccgtcccaaaataagtgactcaaaaatgactc 49
           ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 112 gtactccctccgtcccaaaataagtgactcaaaaatgactc 72



 Score = 65.9 bits (33), Expect = 1e-10
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                               
Query: 15 cctccgtcccaaaataagtgactcaaaaatgactcaa 51
          |||| ||||||||||||||||||||||||||||||||
Sbjct: 10 cctctgtcccaaaataagtgactcaaaaatgactcaa 46



 Score = 56.0 bits (28), Expect = 9e-08
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                   
Query: 57  gagtcatttttgagtcacttactttgagatggagggagta 96
           ||||||||||||||||||||| |||| || ||||||||||
Sbjct: 72  gagtcatttttgagtcacttattttgggacggagggagta 111



 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                    
Query: 57 gagtcatttttgagtcacttactttg 82
          ||||||||||||||||||||| ||||
Sbjct: 44 gagtcatttttgagtcacttattttg 19




>RF00906;MIR1122;FJ491378.1/4581-4466 4550:Secale cereale (rye)
          Length = 116

 Score = 67.9 bits (34), Expect = 2e-11
 Identities = 40/42 (95%)
 Strand = Plus / Minus

                                                     
Query: 10  tacttcctccgtcccaaaataagtgactcaaaaatgactcaa 51
           |||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 112 tactccctccgtcccaaaataagtgactcaaaagtgactcaa 71



 Score = 60.0 bits (30), Expect = 6e-09
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                    
Query: 10 tacttcctccgtcccaaaataagtgactcaaaaatgactcaa 51
          |||| |||| ||||||||||||||||||||||||| ||||||
Sbjct: 5  tactccctctgtcccaaaataagtgactcaaaaatcactcaa 46



 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                   
Query: 57  gagtcatttttgagtcacttactttgagatggagggagta 96
           |||||| |||||||||||||| |||| || ||||||||||
Sbjct: 73  gagtcacttttgagtcacttattttgggacggagggagta 112




>RF00906;MIR1122;AF181455.1/3108-2994 4513:Hordeum vulgare
          Length = 115

 Score = 63.9 bits (32), Expect = 4e-10
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                       
Query: 8   agtacttcctccgtcccaaaataagtgactcaaaaatgactcaa 51
           |||||| ||||||||||||||||||||||| |||||||| ||||
Sbjct: 113 agtactccctccgtcccaaaataagtgactgaaaaatgagtcaa 70



 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 35/38 (92%), Gaps = 1/38 (2%)
 Strand = Plus / Plus

                                                
Query: 9  gtacttcctccgtcccaaaataagtgactcaaaaatga 46
          ||||| |||||||||||||| || ||||||||||||||
Sbjct: 4  gtactccctccgtcccaaaa-aaatgactcaaaaatga 40




>RF00906;MIR1122;AF521177.1/81577-81474 4513:Hordeum vulgare
          Length = 104

 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                           
Query: 19 cgtcccaaaataagtgactcaaaaatgactcaa 51
          ||||||||||||||||||||||||| |||||||
Sbjct: 13 cgtcccaaaataagtgactcaaaaacgactcaa 45



 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                          
Query: 10  tacttcctccgtcccaaaataagtgactcaa 40
           |||| ||||||||||||||||||||||||||
Sbjct: 100 tactccctccgtcccaaaataagtgactcaa 70




>RF00906;MIR1122;AB183299.1/312-404 4565:Triticum aestivum (bread
          wheat)
          Length = 93

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                         
Query: 10 tacttcctccgtcccaaaataagtgactcaa 40
          ||||||||||||||||||||||||| |||||
Sbjct: 89 tacttcctccgtcccaaaataagtgtctcaa 59



 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 15 cctccgtcccaaaataagtgactcaa 40
          |||||||||||||||||||| |||||
Sbjct: 10 cctccgtcccaaaataagtgtctcaa 35




>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
          Length = 132

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 10 tacttcctccgtcccaaaataagtgactcaa 40
          |||| ||||||||||||||||||||||||||
Sbjct: 5  tactccctccgtcccaaaataagtgactcaa 35




>RF01058;MIR806;AP004279.1/119207-118967 39947:Oryza sativa
          Japonica Group
          Length = 241

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 10 tacttcctccgtcccaaaataagtg 34
          |||||||||||||||||||||||||
Sbjct: 2  tacttcctccgtcccaaaataagtg 26




>RF00906;MIR1122;AB239678.1/2131-2247 52163:Triticum monococcum
           subsp. aegilopoides
          Length = 117

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 8   agtacttcctccgtcccaaaataagtgactcaa 40
           |||||| ||||||||||||| ||||||||||||
Sbjct: 115 agtactccctccgtcccaaattaagtgactcaa 83



 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 10 tacttcctccgtcccaaaataagtgactcaa 40
          |||| ||||||||||||| ||||||||||||
Sbjct: 5  tactccctccgtcccaaattaagtgactcaa 35




>RF00906;MIR1122;AF427791.1/40179-40064 4513:Hordeum vulgare
          Length = 116

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                           
Query: 16 ctccgtcccaaaataagtgactcaaaaatgact 48
          ||||||| |||||||||||||||||||| ||||
Sbjct: 11 ctccgtctcaaaataagtgactcaaaaacgact 43



 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                 
Query: 58 agtcatttttgagtcacttactttgagatggagggagta 96
          |||| ||||||||||||||| ||||||| |||| |||||
Sbjct: 43 agtcgtttttgagtcacttattttgagacggagagagta 5




>RF00906;MIR1122;FJ477093.1/40908-41001 4513:Hordeum vulgare
          Length = 94

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                           
Query: 8  agtacttcctccgtcccaaaataagtgactcaa 40
          |||||| ||||||||||||| ||||||||||||
Sbjct: 92 agtactccctccgtcccaaattaagtgactcaa 60



 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 10 tacttcctccgtcccaaaataagtgactcaa 40
          |||| |||| |||||||||||||||||||||
Sbjct: 5  tactccctctgtcccaaaataagtgactcaa 35




>RF01058;MIR806;AAAA02032712.1/19270-19031 39946:Oryza sativa
          Indica Group
          Length = 240

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 9  gtacttcctccgtcccaaaataag 32
          ||||||||||||||||||||||||
Sbjct: 1  gtacttcctccgtcccaaaataag 24




>RF00906;MIR1122;AY943294.1/62260-62364 112509:Hordeum vulgare
           subsp. vulgare (domesticated barley)
          Length = 105

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 9   gtacttcctccgtcccaaaataagtgactcaa 40
           ||||||||||||||||||||||| || |||||
Sbjct: 102 gtacttcctccgtcccaaaataactgtctcaa 71




>RF00906;MIR1122;U29095.1/333-439 4565:Triticum aestivum (bread
           wheat)
          Length = 107

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 10  tacttcctccgtcccaaaataagtgactcaa 40
           |||| |||||||||| |||||||||||||||
Sbjct: 103 tactccctccgtcccgaaataagtgactcaa 73




>RF00906;MIR1122;AJ400714.1/3663-3767 4565:Triticum aestivum (bread
           wheat)
          Length = 105

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 10  tacttcctccgtcccaaaataagtgactcaa 40
           |||| |||||||||||||||||||| |||||
Sbjct: 101 tactccctccgtcccaaaataagtgtctcaa 71



 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                            
Query: 7  gagtacttcctccgtcccaaaataagtgactcaa 40
          ||||||| | |||||||||||||||||| |||||
Sbjct: 2  gagtactccttccgtcccaaaataagtgtctcaa 35




>RF00906;MIR1122;FJ184990.1/3303-3406 4565:Triticum aestivum
          (bread wheat)
          Length = 104

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 10 tacttcctccgtcccaaaataagtgactcaa 40
          |||| |||||||||||||||||||| |||||
Sbjct: 5  tactccctccgtcccaaaataagtgtctcaa 35



 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 10  tacttcctccgtcccaaaataagtgactca 39
           |||| |||||||||||||||||||| ||||
Sbjct: 100 tactccctccgtcccaaaataagtgtctca 71




>RF00906;MIR1122;AK249769.1/2180-2285 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 106

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 8   agtacttcctccgtcccaaaataagtg 34
           |||||||||| ||||||||||||||||
Sbjct: 104 agtacttccttcgtcccaaaataagtg 78




>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
          vulgare (domesticated barley)
          Length = 105

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 10 tacttcctccgtcccaaaataagtgactcaa 40
          |||| |||||||||||||||||||| |||||
Sbjct: 5  tactccctccgtcccaaaataagtgtctcaa 35



 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 10  tacttcctccgtcccaaaataagtgactcaa 40
           |||| |||||||||||||||||||| |||||
Sbjct: 101 tactccctccgtcccaaaataagtgtctcaa 71




>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
          Length = 105

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 10 tacttcctccgtcccaaaataagtgactcaa 40
          |||| |||||||||||||||||||| |||||
Sbjct: 5  tactccctccgtcccaaaataagtgtctcaa 35




>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
          Length = 105

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 10 tacttcctccgtcccaaaataagtgactcaa 40
          |||| |||||||||||||||||||| |||||
Sbjct: 5  tactccctccgtcccaaaataagtgtctcaa 35




>RF01058;MIR806;AACV01004692.1/2655-2900 39947:Oryza sativa
          Japonica Group
          Length = 246

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 9  gtacttcctccgtcccaaaataagtg 34
          ||||| ||||||||||||||||||||
Sbjct: 1  gtactccctccgtcccaaaataagtg 26



 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 9   gtacttcctccgtcccaaaataagtg 34
           ||||| ||||||||||||||||||||
Sbjct: 246 gtactacctccgtcccaaaataagtg 221




>RF01058;MIR806;AAAA02004537.1/25464-25706 39946:Oryza sativa Indica
           Group
          Length = 243

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 9   gtacttcctccgtcccaaaataagtg 34
           ||||| ||||||||||||||||||||
Sbjct: 243 gtactacctccgtcccaaaataagtg 218




>RF01058;MIR806;AP004672.3/126730-126486 39947:Oryza sativa Japonica
           Group
          Length = 245

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 9   gtacttcctccgtcccaaaataagtg 34
           ||||| ||||||||||||||||||||
Sbjct: 245 gtactacctccgtcccaaaataagtg 220




>RF00906;MIR1122;FJ752586.1/56000-56102 161934:Beta vulgaris
          Length = 103

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                    
Query: 10 tacttcctccgtcccaaaataagtga 35
          |||||||||||| |||||||||||||
Sbjct: 99 tacttcctccgttccaaaataagtga 74




>RF00906;MIR1122;DQ901436.1/1229-1333 4565:Triticum aestivum
          (bread wheat)
          Length = 105

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 15 cctccgtcccaaaataagtgactcaa 40
          |||||||||||||||||||| |||||
Sbjct: 10 cctccgtcccaaaataagtgtctcaa 35




>RF00906;MIR1122;EU282770.1/593-711 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 119

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 6   cgagtacttcctccgtcccaaaataa 31
           |||||||| |||||||||||||||||
Sbjct: 119 cgagtactccctccgtcccaaaataa 94




>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
          Length = 105

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 9   gtacttcctccgtcccaaaataagtg 34
           ||||| ||||||||||||||||||||
Sbjct: 102 gtactccctccgtcccaaaataagtg 77




>RF00906;MIR1122;AP008209.1/34516197-34516103 39947:Oryza sativa
          Japonica Group
          Length = 95

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 9  gtacttcctccgtcccaaaata 30
          ||||||||||||||||||||||
Sbjct: 4  gtacttcctccgtcccaaaata 25