miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AY133251.1/901-1005 112509:Hordeum vulgare subsp.
          vulgare (domesticated barley)
          Length = 105

 Score = 83.8 bits (42), Expect = 5e-16
 Identities = 76/86 (88%), Gaps = 1/86 (1%)
 Strand = Plus / Plus

                                                                      
Query: 14 atacttcctccgtcccaaaataattgtctagaggcttagtacaattttatactaaagcta 73
          ||||| ||||||| ||||||||| ||||| ||| | |||||||||||| ||||| |||||
Sbjct: 4  atactccctccgttccaaaataagtgtcttgag-cgtagtacaattttgtactagagcta 62

                                    
Query: 74 gtacaaggttgagacatttattttgg 99
          |||||| ||||||||| |||||||||
Sbjct: 63 gtacaaagttgagacagttattttgg 88




>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
          Length = 105

 Score = 83.8 bits (42), Expect = 5e-16
 Identities = 76/86 (88%), Gaps = 1/86 (1%)
 Strand = Plus / Plus

                                                                      
Query: 14 atacttcctccgtcccaaaataattgtctagaggcttagtacaattttatactaaagcta 73
          ||||| ||||||||||||||||| |||||  || |||||||||| ||| |||||||| ||
Sbjct: 4  atactccctccgtcccaaaataagtgtctcaag-cttagtacaactttgtactaaagtta 62

                                    
Query: 74 gtacaaggttgagacatttattttgg 99
           ||||| |||||||||||||||||||
Sbjct: 63 atacaaagttgagacatttattttgg 88




>RF00906;MIR1122;DQ871219.1/106890-106994 85692:Triticum turgidum
          subsp. dicoccoides
          Length = 105

 Score = 77.8 bits (39), Expect = 3e-14
 Identities = 76/87 (87%), Gaps = 1/87 (1%)
 Strand = Plus / Plus

                                                                      
Query: 13 aatacttcctccgtcccaaaataattgtctagaggcttagtacaattttatactaaagct 72
          |||||| ||||||||||||||||| ||||| || |||||||| || ||| ||||| || |
Sbjct: 3  aatactccctccgtcccaaaataagtgtcttga-gcttagtaaaaatttgtactagagat 61

                                     
Query: 73 agtacaaggttgagacatttattttgg 99
          ||||||| ||||||||| |||||||||
Sbjct: 62 agtacaaagttgagacacttattttgg 88




>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
          Length = 105

 Score = 75.8 bits (38), Expect = 1e-13
 Identities = 75/86 (87%), Gaps = 1/86 (1%)
 Strand = Plus / Plus

                                                                      
Query: 14 atacttcctccgtcccaaaataattgtctagaggcttagtacaattttatactaaagcta 73
          ||||| ||||||||||||||||| |||||  || ||||||||||  || |||||||| ||
Sbjct: 4  atactccctccgtcccaaaataagtgtctcaag-cttagtacaaccttgtactaaagtta 62

                                    
Query: 74 gtacaaggttgagacatttattttgg 99
           ||||| |||||||||||||||||||
Sbjct: 63 atacaaagttgagacatttattttgg 88




>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
          vulgare (domesticated barley)
          Length = 105

 Score = 73.8 bits (37), Expect = 5e-13
 Identities = 74/85 (87%), Gaps = 1/85 (1%)
 Strand = Plus / Plus

                                                                      
Query: 15 tacttcctccgtcccaaaataattgtctagaggcttagtacaattttatactaaagctag 74
          |||| ||||||||||||||||| |||||  || ||||||  |||||| ||||| ||||||
Sbjct: 5  tactccctccgtcccaaaataagtgtctcaag-cttagtgtaattttgtactacagctag 63

                                   
Query: 75 tacaaggttgagacatttattttgg 99
          ||||| ||||||||| |||||||||
Sbjct: 64 tacaaagttgagacacttattttgg 88




>RF00906;MIR1122;AF521177.1/206122-206018 4513:Hordeum vulgare
          Length = 105

 Score = 71.9 bits (36), Expect = 2e-12
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                              
Query: 47 gcttagtacaattttatactaaagctagtacaaggttgagacatttattttg 98
          ||||||||||| ||| ||||| ||||||||||| ||||||||||||||||||
Sbjct: 36 gcttagtacaactttgtactagagctagtacaaagttgagacatttattttg 87




>RF00906;MIR1122;AJ234485.1/114-218 4513:Hordeum vulgare
          Length = 105

 Score = 71.9 bits (36), Expect = 2e-12
 Identities = 73/84 (86%), Gaps = 1/84 (1%)
 Strand = Plus / Plus

                                                                      
Query: 15 tacttcctccgtcccaaaataattgtctagaggcttagtacaattttatactaaagctag 74
          |||| |||||||| |||||||| |||||  |  |||||||||||||| ||||| ||||||
Sbjct: 5  tactccctccgtctcaaaataagtgtcttaat-cttagtacaattttgtactagagctag 63

                                  
Query: 75 tacaaggttgagacatttattttg 98
          ||||| ||||||||| ||||||||
Sbjct: 64 tacaatgttgagacagttattttg 87




>RF00906;MIR1122;FJ184990.1/3303-3406 4565:Triticum aestivum
          (bread wheat)
          Length = 104

 Score = 67.9 bits (34), Expect = 3e-11
 Identities = 75/86 (87%), Gaps = 2/86 (2%)
 Strand = Plus / Plus

                                                                      
Query: 14 atacttcctccgtcccaaaataattgtctagaggcttagtacaattttatactaaagcta 73
          ||||| ||||||||||||||||| |||||  |  |||||||||||||||||||| || ||
Sbjct: 4  atactccctccgtcccaaaataagtgtctcaac-cttagtacaattttatactagagtta 62

                                    
Query: 74 gtacaaggttgagacatttattttgg 99
          |||||| | ||||||| |||||||||
Sbjct: 63 gtacaaag-tgagacacttattttgg 87



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 13  aatacttcctccgtcccaaaataattgtct 42
           |||||| ||||||||||||||||| |||||
Sbjct: 102 aatactccctccgtcccaaaataagtgtct 73




>RF00906;MIR1122;AK249748.1/2677-2573 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 105

 Score = 67.9 bits (34), Expect = 3e-11
 Identities = 77/90 (85%), Gaps = 1/90 (1%)
 Strand = Plus / Minus

                                                                       
Query: 15  tacttcctccgtcccaaaataattgtctagaggcttagtacaattttatactaaagctag 74
           |||| |||||||| |||||||| |||||  |  ||||||| || |||||| |||||||||
Sbjct: 101 tactccctccgtcgcaaaataaatgtcttaaa-cttagtataaatttatagtaaagctag 43

                                         
Query: 75  tacaaggttgagacatttattttggaacag 104
           ||||| ||| ||||| ||||||||||||||
Sbjct: 42  tacaaagttaagacagttattttggaacag 13




>RF00906;MIR1122;DQ445236.1/13423-13319 112509:Hordeum vulgare
           subsp. vulgare (domesticated barley)
          Length = 105

 Score = 67.9 bits (34), Expect = 3e-11
 Identities = 77/90 (85%), Gaps = 1/90 (1%)
 Strand = Plus / Minus

                                                                       
Query: 13  aatacttcctccgtcccaaaataattgtctagaggcttagtacaattttatactaaagct 72
           |||||| ||||||| ||||||||| | |||  || |||||||||| ||| ||||| ||||
Sbjct: 103 aatactccctccgttccaaaataactatctcaag-cttagtacaactttgtactagagct 45

                                         
Query: 73  agtacaaggttgagacatttattttggaac 102
           |||||||  |||||||| ||||||||||||
Sbjct: 44  agtacaaatttgagacacttattttggaac 15




>RF00906;MIR1122;DQ995510.1/1615-1718 4513:Hordeum vulgare
          Length = 104

 Score = 65.9 bits (33), Expect = 1e-10
 Identities = 75/88 (85%), Gaps = 2/88 (2%)
 Strand = Plus / Plus

                                                                      
Query: 12 taatacttcctccgtcccaaaataattgtctagaggcttagtacaattttatactaaagc 71
          ||||||| |||||||| |||||||| |||||  |  ||| |||||| ||| ||||| |||
Sbjct: 2  taatactccctccgtctcaaaataactgtctcaa--ctttgtacaactttgtactagagc 59

                                      
Query: 72 tagtacaaggttgagacatttattttgg 99
          |||||||| ||||||||| |||||||||
Sbjct: 60 tagtacaaagttgagacagttattttgg 87




>RF00906;MIR1122;EU593539.1/914-1018 4513:Hordeum vulgare
          Length = 105

 Score = 65.9 bits (33), Expect = 1e-10
 Identities = 73/85 (85%), Gaps = 1/85 (1%)
 Strand = Plus / Plus

                                                                      
Query: 15 tacttcctccgtcccaaaataattgtctagaggcttagtacaattttatactaaagctag 74
          |||| ||||||||||||||||| |||||  | |||||||| || ||||||||| | ||||
Sbjct: 5  tactccctccgtcccaaaataactgtct-taagcttagtataaatttatactagatctag 63

                                   
Query: 75 tacaaggttgagacatttattttgg 99
          || || ||||||||| |||||||||
Sbjct: 64 tataaagttgagacagttattttgg 88



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 13  aatacttcctccgtcccaaaataattgtct 42
           |||||| ||||||||||||||||| |||||
Sbjct: 103 aatactccctccgtcccaaaataactgtct 74




>RF00906;MIR1122;AY821694.1/1308-1197 37674:Crithopsis delileana
          Length = 112

 Score = 65.9 bits (33), Expect = 1e-10
 Identities = 48/53 (90%)
 Strand = Plus / Plus

                                                               
Query: 47 gcttagtacaattttatactaaagctagtacaaggttgagacatttattttgg 99
          ||||||||||| ||| |||||||| |||||||| ||||||||| |||||||||
Sbjct: 43 gcttagtacaactttgtactaaagttagtacaaagttgagacacttattttgg 95




>RF00906;MIR1122;AK252392.1/1279-1175 112509:Hordeum vulgare
          subsp. vulgare (domesticated barley)
          Length = 105

 Score = 63.9 bits (32), Expect = 5e-10
 Identities = 69/80 (86%), Gaps = 1/80 (1%)
 Strand = Plus / Plus

                                                                      
Query: 20 cctccgtcccaaaataattgtctagaggcttagtacaattttatactaaagctagtacaa 79
          ||||||||||||||||| |||||  || ||||||||||||||||||   |||||||||||
Sbjct: 10 cctccgtcccaaaataagtgtcttaag-cttagtacaattttatacatgagctagtacaa 68

                              
Query: 80 ggttgagacatttattttgg 99
           ||| |||||  ||||||||
Sbjct: 69 agttaagacagatattttgg 88




>RF00906;MIR1122;X83518.1/7301-7197 4513:Hordeum vulgare
          Length = 105

 Score = 63.9 bits (32), Expect = 5e-10
 Identities = 75/88 (85%), Gaps = 1/88 (1%)
 Strand = Plus / Plus

                                                                       
Query: 14  atacttcctccgtcccaaaataattgtctagaggcttagtacaattttatactaaagcta 73
           ||||| ||||| || |||||||| |||||  || |||||||||| ||| || || |||||
Sbjct: 4   atactccctccatctcaaaataactgtctcaag-cttagtacaactttgtagtagagcta 62

                                       
Query: 74  gtacaaggttgagacatttattttggaa 101
           |||||| ||||||||| |||||||||||
Sbjct: 63  gtacaaagttgagacacttattttggaa 90




>RF00906;MIR1122;AF474373.1/50497-50394 112509:Hordeum vulgare
          subsp. vulgare (domesticated barley)
          Length = 104

 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 68/79 (86%), Gaps = 1/79 (1%)
 Strand = Plus / Plus

                                                                      
Query: 21 ctccgtcccaaaataattgtctagaggcttagtacaattttatactaaagctagtacaag 80
          |||||||||||||||| |||||  | || |||||||| ||| ||||| | ||||||||| 
Sbjct: 11 ctccgtcccaaaataactgtct-caagcctagtacaactttgtactagaactagtacaaa 69

                             
Query: 81 gttgagacatttattttgg 99
          ||||||||| |||||||||
Sbjct: 70 gttgagacacttattttgg 88




>RF00906;MIR1122;DQ901436.1/1229-1333 4565:Triticum aestivum
          (bread wheat)
          Length = 105

 Score = 60.0 bits (30), Expect = 7e-09
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                            
Query: 50 tagtacaattttatactaaagctagtacaaggttgagacatttattttgg 99
          |||||||| ||| || |||||||||||||| ||||||||| |||||||||
Sbjct: 67 tagtacaactttgtattaaagctagtacaaagttgagacacttattttgg 18




>RF00906;MIR1122;DQ175992.1/50-154 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 105

 Score = 60.0 bits (30), Expect = 7e-09
 Identities = 60/70 (85%)
 Strand = Plus / Plus

                                                                       
Query: 47  gcttagtacaattttatactaaagctagtacaaggttgagacatttattttggaacaggg 106
           |||||||| |||||||||||| |||||| |||| ||| ||||| ||||||||| || | |
Sbjct: 36  gcttagtataattttatactagagctagaacaaagttaagacaattattttgggacggag 95

                     
Query: 107 gaagtagaaa 116
           | ||||||||
Sbjct: 96  ggagtagaaa 105



 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 15  tacttcctccgtcccaaaataattgtct 42
           |||| |||||||||||||||||||||||
Sbjct: 101 tactccctccgtcccaaaataattgtct 74




>RF00906;MIR1122;AK249560.1/988-1092 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 105

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 72/85 (84%), Gaps = 1/85 (1%)
 Strand = Plus / Minus

                                                                       
Query: 15  tacttcctccgtcccaaaataattgtctagaggcttagtacaattttatactaaagctag 74
           |||| ||||||||||||||||| |||||  |  |||| ||||| ||| ||||| ||||||
Sbjct: 101 tactccctccgtcccaaaataactgtct-caaacttaatacaagtttgtactatagctag 43

                                    
Query: 75  tacaaggttgagacatttattttgg 99
           || || ||||||||| |||||||||
Sbjct: 42  tataaagttgagacacttattttgg 18




>RF00906;MIR1122;DQ445238.1/5626-5730 112509:Hordeum vulgare
          subsp. vulgare (domesticated barley)
          Length = 105

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 72/85 (84%), Gaps = 1/85 (1%)
 Strand = Plus / Plus

                                                                      
Query: 15 tacttcctccgtcccaaaataattgtctagaggcttagtacaattttatactaaagctag 74
          |||| ||||||||||||||||| |||||  | |||||||| || |||||| || | ||||
Sbjct: 5  tactccctccgtcccaaaataactgtct-taagcttagtataaatttatattagatctag 63

                                   
Query: 75 tacaaggttgagacatttattttgg 99
          || || ||||||||| |||||||||
Sbjct: 64 tataaagttgagacagttattttgg 88



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 13  aatacttcctccgtcccaaaataattgtct 42
           |||||| ||||||||||||||||| |||||
Sbjct: 103 aatactccctccgtcccaaaataactgtct 74




>RF00906;MIR1122;AJ249141.1/1014-910 4513:Hordeum vulgare
          Length = 105

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                              
Query: 47 gcttagtacaattttatactaaagctagtacaaggttgagacatttattttg 98
          ||||||||||| ||| ||||| ||||| ||||| ||||||||| ||||||||
Sbjct: 36 gcttagtacaactttgtactagagctaatacaaagttgagacagttattttg 87




>RF00906;MIR1122;AB183299.1/312-404 4565:Triticum aestivum (bread
          wheat)
          Length = 93

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 50/57 (87%), Gaps = 2/57 (3%)
 Strand = Plus / Minus

                                                                   
Query: 14 atacttcctccgtcccaaaataattgtctagaggcttagtacaattttatactaaag 70
          ||||||||||||||||||||||| |||||  |  ||||||||||  |||||||||||
Sbjct: 90 atacttcctccgtcccaaaataagtgtctcaa--cttagtacaaagttatactaaag 36




>RF00906;MIR1122;DQ537335.1/8332-8425 4565:Triticum aestivum (bread
           wheat)
          Length = 94

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                       
Query: 59  tttatactaaagctagtacaaggttgagacatttattttggaac 102
           |||| ||||||| |||||||| |||||| ||| |||||||||||
Sbjct: 58  tttacactaaagttagtacaaagttgagtcatctattttggaac 15




>RF00906;MIR1122;AY943294.1/62260-62364 112509:Hordeum vulgare
           subsp. vulgare (domesticated barley)
          Length = 105

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 15  tacttcctccgtcccaaaataattgtct 42
           |||||||||||||||||||||| |||||
Sbjct: 101 tacttcctccgtcccaaaataactgtct 74




>RF01058;MIR806;AP004279.1/119207-118967 39947:Oryza sativa
          Japonica Group
          Length = 241

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 14 atacttcctccgtcccaaaataa 36
          |||||||||||||||||||||||
Sbjct: 1  atacttcctccgtcccaaaataa 23




>RF00906;MIR1122;DQ537336.1/120340-120474 4565:Triticum aestivum
           (bread wheat)
          Length = 135

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 11  ataatacttcctccgtcccaaaataattgtc 41
           |||||||| ||||||||| ||||||||||||
Sbjct: 135 ataatactccctccgtccaaaaataattgtc 105




>RF00906;MIR1122;AF525764.1/1593-1489 200361:Aegilops tauschii
          subsp. strangulata
          Length = 105

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 12 taatacttcctccgtcccaaaataattgtct 42
          ||||||| ||| |||||||||||||||||||
Sbjct: 2  taatactccctacgtcccaaaataattgtct 32




>RF00906;MIR1122;AAAA02005583.1/44128-44034 39946:Oryza sativa
          Indica Group
          Length = 95

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 13 aatacttcctccgtcccaaaata 35
          |||||||||||||||||||||||
Sbjct: 3  aatacttcctccgtcccaaaata 25




>RF00906;MIR1122;AP008216.1/2906565-2906717 39947:Oryza sativa
           Japonica Group
          Length = 153

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 13  aatacttcctccgtcccaaaata 35
           |||||||||||||||||||||||
Sbjct: 151 aatacttcctccgtcccaaaata 129




>RF01058;MIR806;AAAA02032712.1/19270-19031 39946:Oryza sativa
          Indica Group
          Length = 240

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 15 tacttcctccgtcccaaaataa 36
          ||||||||||||||||||||||
Sbjct: 2  tacttcctccgtcccaaaataa 23




>RF00906;MIR1122;AJ400714.1/3663-3767 4565:Triticum aestivum (bread
           wheat)
          Length = 105

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 71/86 (82%), Gaps = 1/86 (1%)
 Strand = Plus / Minus

                                                                       
Query: 14  atacttcctccgtcccaaaataattgtctagaggcttagtacaattttatactaaagcta 73
           ||||| ||||||||||||||||| |||||  |  |||||||||| ||| ||||| || ||
Sbjct: 102 atactccctccgtcccaaaataagtgtct-caaccttagtacaactttgtactagagtta 44

                                     
Query: 74  gtacaaggttgagacatttattttgg 99
           ||  ||  |||||||| |||||||||
Sbjct: 43  gtgtaaaattgagacacttattttgg 18