miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;FJ374624.1/2920-2820 4572:Triticum urartu
Length = 101
Score = 103 bits (52), Expect = 5e-22
Identities = 77/85 (90%), Gaps = 4/85 (4%)
Strand = Plus / Plus
Query: 16 ctccgtcccaaattaagtgactcaactttgtactaactttagtgcaaatttagtacacag 75
|||||||||||| ||||||||||||||||||||||||||||| || |||||||| ||
Sbjct: 11 ctccgtcccaaagtaagtgactcaactttgtactaactttag----aagttagtacaaag 66
Query: 76 ttgagtcatttattttgggacagag 100
|||||||| ||||||||||||||||
Sbjct: 67 ttgagtcacttattttgggacagag 91
Score = 69.9 bits (35), Expect = 7e-12
Identities = 75/88 (85%), Gaps = 4/88 (4%)
Strand = Plus / Minus
Query: 9 gtactccctccgtcccaaattaagtgactcaactttgtactaactttagtgcaaatttag 68
|||||| ||| |||||||| ||||||||||||||||||||||||| | ||| ||||
Sbjct: 98 gtactcgctctgtcccaaaataagtgactcaactttgtactaact----tctaaagttag 43
Query: 69 tacacagttgagtcatttattttgggac 96
|||| |||||||||| ||| ||||||||
Sbjct: 42 tacaaagttgagtcacttactttgggac 15
>RF00906;MIR1122;FJ477093.1/40908-41001 4513:Hordeum vulgare
Length = 94
Score = 97.6 bits (49), Expect = 3e-20
Identities = 55/57 (96%)
Strand = Plus / Minus
Query: 7 aagtactccctccgtcccaaattaagtgactcaactttgtactaactttagtgcaaa 63
|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 93 aagtactccctccgtcccaaattaagtgactcaactttatactaactttagtacaaa 37
Score = 67.9 bits (34), Expect = 3e-11
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 10 tactccctccgtcccaaattaagtgactcaactttgtactaa 51
||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 5 tactccctctgtcccaaaataagtgactcaactttgtactaa 46
>RF00906;MIR1122;AF091802.1/1995-2099 37682:Aegilops tauschii
Length = 105
Score = 91.7 bits (46), Expect = 2e-18
Identities = 82/94 (87%)
Strand = Plus / Minus
Query: 10 tactccctccgtcccaaattaagtgactcaactttgtactaactttagtgcaaatttagt 69
|||||||||||| | ||| || ||||||||||||||||||||| |||| |||| |||||
Sbjct: 101 tactccctccgttctaaaatagatgactcaactttgtactaactatagtacaaaattagt 42
Query: 70 acacagttgagtcatttattttgggacagaggga 103
||| ||||||||||| |||||||| || ||||||
Sbjct: 41 acaaagttgagtcatctattttggaacggaggga 8
Score = 61.9 bits (31), Expect = 2e-09
Identities = 75/87 (86%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 6 gaagtactccctccgtcccaaattaagtgactcaactttgtactaactttagtgc-aaat 64
|||||||||||||||| ||||| || ||||||||||||||||||| ||| || | | |
Sbjct: 1 gaagtactccctccgttccaaaatagatgactcaactttgtactaa-ttttgtactatag 59
Query: 65 ttagtacacagttgagtcatttatttt 91
|||||||| ||||||||||| ||||||
Sbjct: 60 ttagtacaaagttgagtcatctatttt 86
>RF00906;MIR1122;AF521177.1/81577-81474 4513:Hordeum vulgare
Length = 104
Score = 83.8 bits (42), Expect = 5e-16
Identities = 51/54 (94%)
Strand = Plus / Minus
Query: 10 tactccctccgtcccaaattaagtgactcaactttgtactaactttagtgcaaa 63
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 100 tactccctccgtcccaaaataagtgactcaactttgtactaaagttagtgcaaa 47
Score = 56.0 bits (28), Expect = 1e-07
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 64 tttagtacacagttgagtcatttattttgggacagaggga 103
||||||||| |||||||||| |||||||||||| ||||||
Sbjct: 58 tttagtacaaagttgagtcacttattttgggacggaggga 97
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 34 gactcaactttgtactaactttagtgcaaa 63
|||||||||||| |||||||||||| ||||
Sbjct: 39 gactcaactttgcactaactttagtacaaa 68
>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
Length = 132
Score = 83.8 bits (42), Expect = 5e-16
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 10 tactccctccgtcccaaattaagtgactcaactttgtactaacttt 55
|||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgactcaactttgtactaacttt 50
Score = 73.8 bits (37), Expect = 4e-13
Identities = 46/49 (93%)
Strand = Plus / Minus
Query: 9 gtactccctccgtcccaaattaagtgactcaactttgtactaactttag 57
|||||| |||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 129 gtactcgctccatcccaaaataagtgactcaactttgtactaactttag 81
Score = 58.0 bits (29), Expect = 3e-08
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 55 tagtgcaaatttagtacacagttgagtcatttattttgggacagaggga 103
|||| |||| |||||||| |||||||||| |||||||||||| ||||||
Sbjct: 56 tagtacaaagttagtacaaagttgagtcacttattttgggacggaggga 8
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 65 ttagtacacagttgagtcatttattttggga 95
|||||||| |||||||||| |||||||||||
Sbjct: 87 ttagtacaaagttgagtcacttattttggga 117
>RF00906;MIR1122;U29095.1/333-439 4565:Triticum aestivum (bread
wheat)
Length = 107
Score = 81.8 bits (41), Expect = 2e-15
Identities = 83/96 (86%), Gaps = 2/96 (2%)
Strand = Plus / Plus
Query: 10 tactccctccgtcccaaattaagtg--actcaactttgtactaactttagtgcaaattta 67
|||||||||||||||||| |||||| ||||||||| ||||| |||||| |||| |||
Sbjct: 5 tactccctccgtcccaaaataagtggatctcaactttatactatttttagtacaaaatta 64
Query: 68 gtacacagttgagtcatttattttgggacagaggga 103
||||| |||||||||| |||||| ||||| ||||||
Sbjct: 65 gtacaaagttgagtcacttatttcgggacggaggga 100
Score = 67.9 bits (34), Expect = 3e-11
Identities = 40/42 (95%)
Strand = Plus / Minus
Query: 10 tactccctccgtcccaaattaagtgactcaactttgtactaa 51
||||||||||||||| || |||||||||||||||||||||||
Sbjct: 103 tactccctccgtcccgaaataagtgactcaactttgtactaa 62
>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
Length = 105
Score = 77.8 bits (39), Expect = 3e-14
Identities = 51/55 (92%)
Strand = Plus / Minus
Query: 9 gtactccctccgtcccaaattaagtgactcaactttgtactaactttagtgcaaa 63
||||||||||||||||||| |||||| || |||||||||||||||||||| ||||
Sbjct: 102 gtactccctccgtcccaaaataagtgtcttaactttgtactaactttagtacaaa 48
>RF00906;MIR1122;AB239678.1/2131-2247 52163:Triticum monococcum
subsp. aegilopoides
Length = 117
Score = 75.8 bits (38), Expect = 1e-13
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 10 tactccctccgtcccaaattaagtgactcaactttgta 47
||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tactccctccgtcccaaattaagtgactcaactttgta 42
Score = 67.9 bits (34), Expect = 3e-11
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 8 agtactccctccgtcccaaattaagtgactcaac 41
||||||||||||||||||||||||||||||||||
Sbjct: 115 agtactccctccgtcccaaattaagtgactcaac 82
>RF00906;MIR1122;DQ995510.1/1615-1718 4513:Hordeum vulgare
Length = 104
Score = 75.8 bits (38), Expect = 1e-13
Identities = 87/102 (85%), Gaps = 1/102 (0%)
Strand = Plus / Minus
Query: 8 agtactccctccgtcccaaattaagtgactcaactttgtactaactttagtgcaaattta 67
|||||||||||| ||||||| ||| || ||||||||||||||| || |||| |||| ||
Sbjct: 102 agtactccctccatcccaaaataactgtctcaactttgtactagctctagtacaaagtt- 44
Query: 68 gtacacagttgagtcatttattttgggacagagggattatta 109
||||| ||||||| || |||||||| ||| |||||| |||||
Sbjct: 43 gtacaaagttgagacagttattttgagacggagggagtatta 2
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 10 tactccctccgtcccaaattaagtgactcaactttgtac 48
||||||||||||| |||| ||| || |||||||||||||
Sbjct: 5 tactccctccgtctcaaaataactgtctcaactttgtac 43
>RF00906;MIR1122;AY821694.1/1308-1197 37674:Crithopsis delileana
Length = 112
Score = 75.8 bits (38), Expect = 1e-13
Identities = 50/54 (92%)
Strand = Plus / Minus
Query: 10 tactccctccgtcccaaattaagtgactcaactttgtactaactttagtgcaaa 63
|||||||||| ||||||| |||||| ||||||||||||||||||||||| ||||
Sbjct: 108 tactccctccatcccaaaataagtgtctcaactttgtactaactttagtacaaa 55
>RF00906;MIR1122;EU626553.1/80133-80237 4572:Triticum urartu
Length = 105
Score = 73.8 bits (37), Expect = 4e-13
Identities = 82/97 (84%)
Strand = Plus / Plus
Query: 7 aagtactccctccgtcccaaattaagtgactcaactttgtactaactttagtgcaaattt 66
||||||||||||||| ||||| || |||||||||||| ||||||||||| | ||| ||
Sbjct: 2 aagtactccctccgttccaaaatagatgactcaactttatactaactttaatataaagtt 61
Query: 67 agtacacagttgagtcatttattttgggacagaggga 103
|||| | ||||| ||||| |||||||| || ||||||
Sbjct: 62 agtaaaaagttgggtcatctattttggaacggaggga 98
Score = 61.9 bits (31), Expect = 2e-09
Identities = 79/95 (83%)
Strand = Plus / Minus
Query: 9 gtactccctccgtcccaaattaagtgactcaactttgtactaactttagtgcaaatttag 68
||||||||||||| ||||| || |||| ||||||| ||||||||||| ||| ||||
Sbjct: 102 gtactccctccgttccaaaatagatgacccaactttttactaactttatattaaagttag 43
Query: 69 tacacagttgagtcatttattttgggacagaggga 103
|| | ||||||||||| |||||||| || ||||||
Sbjct: 42 tataaagttgagtcatctattttggaacggaggga 8
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 69.9 bits (35), Expect = 7e-12
Identities = 82/95 (86%), Gaps = 2/95 (2%)
Strand = Plus / Minus
Query: 10 tactccctccgtcccaaattaagtgactcaactttgtactaactttagtgcaaatttagt 69
|||||||||||||||||| ||| || |||||||||||| |||||||||| |||| || ||
Sbjct: 101 tactccctccgtcccaaaataaatgtctcaactttgtattaactttagtacaaagtt-gt 43
Query: 70 acacag-ttgagtcatttattttgggacagaggga 103
|| || ||||| || |||||||||||| ||||||
Sbjct: 42 actaagcttgagacacttattttgggacggaggga 8
Score = 56.0 bits (28), Expect = 1e-07
Identities = 83/96 (86%), Gaps = 4/96 (4%)
Strand = Plus / Plus
Query: 10 tactccctccgtcccaaattaagtgactcaa-ctttgtactaactttagtgc-aaattta 67
|||||||||||||||||| |||||| ||||| ||| |||| |||||| || | ||| |||
Sbjct: 5 tactccctccgtcccaaaataagtgtctcaagcttagtac-aacttt-gtactaaagtta 62
Query: 68 gtacacagttgagtcatttattttgggacagaggga 103
|||| ||||||| ||||||||||||||| ||||||
Sbjct: 63 atacaaagttgagacatttattttgggacggaggga 98
>RF00906;MIR1122;DQ901436.1/1229-1333 4565:Triticum aestivum
(bread wheat)
Length = 105
Score = 67.9 bits (34), Expect = 3e-11
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 7 aagtactccctccgtcccaaattaagtgactcaactttgtactaacttta 56
|||| |||||||||||||||| |||||| ||||||||||||||| |||||
Sbjct: 2 aagtgctccctccgtcccaaaataagtgtctcaactttgtactagcttta 51
Score = 44.1 bits (22), Expect = 4e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 66 tagtacacagttgagtcatttattttgggacagaggga 103
||||||| ||||||| || |||||||||||| ||||||
Sbjct: 45 tagtacaaagttgagacacttattttgggacggaggga 8
>RF00906;MIR1122;AF488415.1/78603-78755 4568:Triticum monococcum
Length = 153
Score = 67.9 bits (34), Expect = 3e-11
Identities = 49/54 (90%)
Strand = Plus / Minus
Query: 10 tactccctccgtcccaaattaagtgactcaactttgtactaactttagtgcaaa 63
|||||||||||||||||| ||| || ||||| ||||||||||||||||| ||||
Sbjct: 149 tactccctccgtcccaaaataactgtctcaagtttgtactaactttagtacaaa 96
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 36 ctcaactttgtactaactttagtgcaaa 63
|||||||||||||||| |||||||||||
Sbjct: 75 ctcaactttgtactaaatttagtgcaaa 48
>RF00906;MIR1122;DQ871219.1/106890-106994 85692:Triticum turgidum
subsp. dicoccoides
Length = 105
Score = 67.9 bits (34), Expect = 3e-11
Identities = 52/58 (89%)
Strand = Plus / Minus
Query: 9 gtactccctccgtcccaaattaagtgactcaactttgtactaactttagtgcaaattt 66
||||||||||| ||||||| |||||| ||||||||||||||| || |||| |||||||
Sbjct: 102 gtactccctccatcccaaaataagtgtctcaactttgtactatctctagtacaaattt 45
>RF00906;MIR1122;DQ537335.1/8332-8425 4565:Triticum aestivum
(bread wheat)
Length = 94
Score = 67.9 bits (34), Expect = 3e-11
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 10 tactccctccgtcccaaattaagtgactcaactttgtactaactttagtg 59
|||||||||||| ||||| || |||||||||||||||||||||||||||
Sbjct: 5 tactccctccgttccaaaatagatgactcaactttgtactaactttagtg 54
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 65 ttagtacacagttgagtcatttattttgggacagaggga 103
|||||||| ||||||||||| |||||||| || ||||||
Sbjct: 46 ttagtacaaagttgagtcatctattttggaacggaggga 8
>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 67.9 bits (34), Expect = 3e-11
Identities = 49/54 (90%)
Strand = Plus / Minus
Query: 10 tactccctccgtcccaaattaagtgactcaactttgtactaactttagtgcaaa 63
|||||||||||||||||| |||||| ||||||||||||||| || |||| ||||
Sbjct: 101 tactccctccgtcccaaaataagtgtctcaactttgtactagctgtagtacaaa 48
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 10 tactccctccgtcccaaattaagtgactcaa 40
|||||||||||||||||| |||||| |||||
Sbjct: 5 tactccctccgtcccaaaataagtgtctcaa 35
Score = 44.1 bits (22), Expect = 4e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 66 tagtacacagttgagtcatttattttgggacagaggga 103
||||||| ||||||| || |||||||||||| ||||||
Sbjct: 61 tagtacaaagttgagacacttattttgggacggaggga 98
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 65.9 bits (33), Expect = 1e-10
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 10 tactccctccgtcccaaattaagtgactcaactttgtactaactttagt 58
|||||||||||||||||| ||| || |||||||||||| ||||||||||
Sbjct: 101 tactccctccgtcccaaaataaatgtctcaactttgtattaactttagt 53
Score = 50.1 bits (25), Expect = 6e-06
Identities = 81/96 (84%), Gaps = 4/96 (4%)
Strand = Plus / Plus
Query: 10 tactccctccgtcccaaattaagtgactcaa-ctttgtactaactt-tagtgcaaattta 67
|||||||||||||||||| |||||| ||||| ||| |||| | ||| || | ||| |||
Sbjct: 5 tactccctccgtcccaaaataagtgtctcaagcttagtacaaccttgtact--aaagtta 62
Query: 68 gtacacagttgagtcatttattttgggacagaggga 103
|||| ||||||| ||||||||||||||| ||||||
Sbjct: 63 atacaaagttgagacatttattttgggacggaggga 98
>RF00906;MIR1122;AY133251.1/901-1005 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 61.9 bits (31), Expect = 2e-09
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 9 gtactccctccgtcccaaattaagtgactcaactttgtactaactttagtgcaaa 63
||||||||||||||||||| ||| || ||||||||||||||| || |||| ||||
Sbjct: 102 gtactccctccgtcccaaaataactgtctcaactttgtactagctctagtacaaa 48
Score = 44.1 bits (22), Expect = 4e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 66 tagtacacagttgagtcatttattttgggacagaggga 103
||||||| ||||||| || |||||||||||| ||||||
Sbjct: 61 tagtacaaagttgagacagttattttgggacggaggga 98
>RF00906;MIR1122;AF488415.1/128685-128592 4568:Triticum monococcum
Length = 94
Score = 60.0 bits (30), Expect = 7e-09
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 10 tactccctccgtcccaaattaagtgactcaactttgtactaactttagtgcaaa 63
|||||||||| | ||||| || |||||||||||||||||||||||||| ||||
Sbjct: 90 tactccctccattccaaaatagatgactcaactttgtactaactttagtacaaa 37
>RF00906;MIR1122;FJ184990.1/3303-3406 4565:Triticum aestivum (bread
wheat)
Length = 104
Score = 58.0 bits (29), Expect = 3e-08
Identities = 45/49 (91%), Gaps = 1/49 (2%)
Strand = Plus / Minus
Query: 10 tactccctccgtcccaaattaagtgactcaactttgtactaactttagt 58
|||||||||||||||||| |||||| ||| |||||||||||||| ||||
Sbjct: 100 tactccctccgtcccaaaataagtgtctc-actttgtactaactctagt 53
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 10 tactccctccgtcccaaattaagtgactcaac 41
|||||||||||||||||| |||||| ||||||
Sbjct: 5 tactccctccgtcccaaaataagtgtctcaac 36
>RF00906;MIR1122;FJ234838.1/106075-106199 29664:Brachypodium
sylvaticum
Length = 125
Score = 58.0 bits (29), Expect = 3e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 10 tactccctccgtcccaaattaagtgactcaactttgt 46
|||||||||||||||| |||||||||||||| |||||
Sbjct: 5 tactccctccgtcccatattaagtgactcaaatttgt 41
>RF00906;MIR1122;EU730900.1/55128-55253 15368:Brachypodium
distachyon
Length = 126
Score = 58.0 bits (29), Expect = 3e-08
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 10 tactccctccgtcccaaattaagtgactcaactttgt 46
|||||||||||||||| |||||||||||||| |||||
Sbjct: 122 tactccctccgtcccatattaagtgactcaaatttgt 86
>RF00906;MIR1122;EF059989.1/24895-24770 29664:Brachypodium
sylvaticum
Length = 126
Score = 58.0 bits (29), Expect = 3e-08
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 10 tactccctccgtcccaaattaagtgactcaactttgt 46
|||||||||||||||| |||||||||||||| |||||
Sbjct: 122 tactccctccgtcccatattaagtgactcaaatttgt 86
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 10 tactccctccgtcccaaattaagtgact 37
||||||||||||||||||||||||||||
Sbjct: 5 tactccctccgtcccaaattaagtgact 32
>RF00906;MIR1122;AJ507395.1/7785-7899 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 115
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 76 ttgagtcatttattttgggacagagggattat 107
|||||||| |||||||||||||||||||||||
Sbjct: 35 ttgagtcacttattttgggacagagggattat 4
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 9 gtactccctccgtcccaaattaagtgactcaa 40
||||||||||||||||||| ||||||||||||
Sbjct: 112 gtactccctccgtcccaaaataagtgactcaa 81
>RF00906;MIR1122;AF325197.1/3732-3639 4565:Triticum aestivum
(bread wheat)
Length = 94
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 33 tgactcaactttgtactaactttagtgcaaa 63
|||||||||||||||||||||||||| ||||
Sbjct: 67 tgactcaactttgtactaactttagtacaaa 37
>RF00906;MIR1122;FJ491378.1/4581-4466 4550:Secale cereale (rye)
Length = 116
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 10 tactccctccgtcccaaattaagtgactcaa 40
|||||||||||||||||| ||||||||||||
Sbjct: 112 tactccctccgtcccaaaataagtgactcaa 82
Score = 52.0 bits (26), Expect = 2e-06
Identities = 61/70 (87%), Gaps = 2/70 (2%)
Strand = Plus / Plus
Query: 35 actcaactttgtactaactttagtgc-aaatttagtacacagttgagtcatttattttgg 93
|||||||||||||||||||||||| | || || ||| ||| |||||||| |||||||||
Sbjct: 41 actcaactttgtactaactttagtacgaagttgagt-cacttttgagtcacttattttgg 99
Query: 94 gacagaggga 103
||| ||||||
Sbjct: 100 gacggaggga 109
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 76 ttgagtcatttattttgggacagaggga 103
|||||||| |||||||||||||||||||
Sbjct: 35 ttgagtcacttattttgggacagaggga 8
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 10 tactccctccgtcccaaattaagtgactcaa 40
||||||||| |||||||| ||||||||||||
Sbjct: 5 tactccctctgtcccaaaataagtgactcaa 35
>RF00906;MIR1122;AK249560.1/988-1092 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 52.0 bits (26), Expect = 2e-06
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 10 tactccctccgtcccaaattaagtgactcaactttgtactaactttagtgcaaa 63
|||||| ||||||||||| |||||| ||||||||| ||||| || |||| ||||
Sbjct: 5 tactccatccgtcccaaaataagtgtctcaactttatactagctatagtacaaa 58
>RF00906;MIR1122;AF181455.1/3108-2994 4513:Hordeum vulgare
Length = 115
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 8 agtactccctccgtcccaaattaagtgact 37
|||||||||||||||||||| |||||||||
Sbjct: 113 agtactccctccgtcccaaaataagtgact 84
>RF00906;MIR1122;DQ445236.1/13423-13319 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 52.0 bits (26), Expect = 2e-06
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 10 tactccctccgtcccaaattaagtgactcaactttgtactaactttagtgcaaa 63
|||||||||||| ||||| |||||| ||||| ||||||||| || |||| ||||
Sbjct: 5 tactccctccgttccaaaataagtgtctcaaatttgtactagctctagtacaaa 58
>RF00906;MIR1122;AK250735.1/291-376 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 86
Score = 52.0 bits (26), Expect = 2e-06
Identities = 39/42 (92%), Gaps = 1/42 (2%)
Strand = Plus / Plus
Query: 10 tactccctccgtcccaaattaagtgact-caactttgtacta 50
|||||||||||||||||| |||||| || |||||||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgtctccaactttgtacta 46
>RF00906;MIR1122;AJ400714.1/3663-3767 4565:Triticum aestivum (bread
wheat)
Length = 105
Score = 50.1 bits (25), Expect = 6e-06
Identities = 81/97 (83%), Gaps = 2/97 (2%)
Strand = Plus / Plus
Query: 8 agtactccctccgtcccaaattaagtgactcaactttgtactaactttagtgcaaattta 67
|||||||| ||||||||||| |||||| ||||| ||| ||||||| |||| |||| ||
Sbjct: 3 agtactccttccgtcccaaaataagtgtctcaattttacactaactctagtacaaagtt- 61
Query: 68 gtac-acagttgagtcatttattttgggacagaggga 103
|||| | |||||| || |||||||||||| ||||||
Sbjct: 62 gtactaaggttgagacacttattttgggacggaggga 98
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 10 tactccctccgtcccaaattaagtgactcaac 41
|||||||||||||||||| |||||| ||||||
Sbjct: 101 tactccctccgtcccaaaataagtgtctcaac 70
>RF00906;MIR1122;AB183299.1/312-404 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 50.1 bits (25), Expect = 6e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 12 ctccctccgtcccaaattaagtgactcaacttt 44
|||||||||||||||| |||||| |||||||||
Sbjct: 7 ctccctccgtcccaaaataagtgtctcaacttt 39
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 10 tactccctccgtcccaaattaagtgactcaactttgtac 48
|||| ||||||||||||| |||||| |||||||| ||||
Sbjct: 89 tacttcctccgtcccaaaataagtgtctcaacttagtac 51
>RF00906;MIR1122;AF474373.1/50497-50394 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 104
Score = 50.1 bits (25), Expect = 6e-06
Identities = 38/41 (92%), Gaps = 1/41 (2%)
Strand = Plus / Minus
Query: 10 tactccctccgtcccaaattaagtgactcaactttgtacta 50
|||||||||| ||||||| |||||| |||||||||||||||
Sbjct: 100 tactccctcc-tcccaaaataagtgtctcaactttgtacta 61
>RF00906;MIR1122;DQ445238.1/5626-5730 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 50.1 bits (25), Expect = 6e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 10 tactccctccgtcccaaattaagtgactcaactttgtacta 50
|||||||||||||||||| ||| || ||||||||| |||||
Sbjct: 101 tactccctccgtcccaaaataactgtctcaactttatacta 61
>RF00906;MIR1122;EU593539.1/914-1018 4513:Hordeum vulgare
Length = 105
Score = 50.1 bits (25), Expect = 6e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 10 tactccctccgtcccaaattaagtgactcaactttgtacta 50
|||||||||||||||||| ||| || ||||||||| |||||
Sbjct: 101 tactccctccgtcccaaaataactgtctcaactttatacta 61
>RF00906;MIR1122;EU730901.1/58586-58463 15368:Brachypodium
distachyon
Length = 124
Score = 50.1 bits (25), Expect = 6e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 10 tactccctccgtcccaaattaagtgactcaactttgt 46
||||| |||||||||| |||||||||||||| |||||
Sbjct: 5 tactctctccgtcccatattaagtgactcaaatttgt 41
>RF00906;MIR1122;EF059989.1/56206-56082 29664:Brachypodium
sylvaticum
Length = 125
Score = 50.1 bits (25), Expect = 6e-06
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 10 tactccctccgtcccaaattaagtgactcaactttgt 46
||||||||||||| || |||||||||||||| |||||
Sbjct: 121 tactccctccgtctcatattaagtgactcaaatttgt 85
>RF00906;MIR1122;EF059989.1/365637-365513 29664:Brachypodium
sylvaticum
Length = 125
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 9 gtactccctccgtcccaaattaagtgactcaa 40
||||||||||||||| | ||||||||||||||
Sbjct: 4 gtactccctccgtcctatattaagtgactcaa 35
>RF00906;MIR1122;AY943294.1/62260-62364 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 9 gtactccctccgtcccaaattaagtgactcaactttgta 47
||||| ||||||||||||| ||| || ||||||||||||
Sbjct: 102 gtacttcctccgtcccaaaataactgtctcaactttgta 64
>RF01058;MIR806;AACV01004692.1/2655-2900 39947:Oryza sativa
Japonica Group
Length = 246
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 9 gtactccctccgtcccaaattaagtg 34
||||||||||||||||||| ||||||
Sbjct: 1 gtactccctccgtcccaaaataagtg 26
>RF00906;MIR1122;ABXC01001527.1/885-965 4558:Sorghum bicolor
(sorghum)
Length = 81
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 9 gtactccctccgtcccaaatta 30
||||||||||||||||||||||
Sbjct: 78 gtactccctccgtcccaaatta 57
>RF00906;MIR1122;DQ871219.1/88217-88124 85692:Triticum turgidum
subsp. dicoccoides
Length = 94
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 34 gactcaactttgtactaactttagtgcaaa 63
||||||||||||||||| ||||||| ||||
Sbjct: 66 gactcaactttgtactatctttagtacaaa 37
>RF00906;MIR1122;AJ249141.1/1014-910 4513:Hordeum vulgare
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 10 tactccctccgtcccaaattaagtgactcaactttgta 47
||||||||||||| |||| ||| || ||||||||||||
Sbjct: 101 tactccctccgtctcaaaataactgtctcaactttgta 64
>RF00906;MIR1122;DQ106595.1/374-276 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 99
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 24 caaattaagtgactcaactttgtactaact 53
|||| ||||||| |||||||||||||||||
Sbjct: 19 caaaataagtgattcaactttgtactaact 48
>RF00906;MIR1122;AF521177.1/206122-206018 4513:Hordeum vulgare
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 46/54 (85%)
Strand = Plus / Minus
Query: 10 tactccctccgtcccaaattaagtgactcaactttgtactaactttagtgcaaa 63
|||||||||||| |||| ||| || ||||||||||||||| || |||| ||||
Sbjct: 101 tactccctccgtttcaaaataaatgtctcaactttgtactagctctagtacaaa 48
>RF00906;MIR1122;EU730895.1/43836-43713 15368:Brachypodium
distachyon
Length = 124
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 9 gtactccctccgtcccaaattaagtg 34
||||||||||||||||| ||||||||
Sbjct: 121 gtactccctccgtcccatattaagtg 96
>RF00906;MIR1122;EU730895.1/70118-69993 15368:Brachypodium
distachyon
Length = 126
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 9 gtactccctccgtcccaaattaagtg 34
||||||||||||||||| ||||||||
Sbjct: 4 gtactccctccgtcccatattaagtg 29
>RF00906;MIR1122;AAAA02002553.1/2264-2375 39946:Oryza sativa Indica
Group
Length = 112
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 6 gaagtactccctccgtcccaaa 27
||||||||||||||||||||||
Sbjct: 112 gaagtactccctccgtcccaaa 91
>RF00906;MIR1122;AACV01010622.1/23023-23178 39947:Oryza sativa
Japonica Group
Length = 156
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 gaagtactccctccgtcccaaa 27
||||||||||||||||||||||
Sbjct: 1 gaagtactccctccgtcccaaa 22
>RF00906;MIR1122;AAAA02014858.1/50124-50003 39946:Oryza sativa
Indica Group
Length = 122
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 9 gtactccctccgtcccaaattaagtg 34
|||||||||||||||||| |||||||
Sbjct: 119 gtactccctccgtcccaatttaagtg 94
>RF00906;MIR1122;AC025783.10/100980-101130 39947:Oryza sativa
Japonica Group
Length = 151
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 6 gaagtactccctccgtcccaaa 27
||||||||||||||||||||||
Sbjct: 151 gaagtactccctccgtcccaaa 130
>RF00906;MIR1122;AAAA02010499.1/21534-21382 39946:Oryza sativa
Indica Group
Length = 153
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 gaagtactccctccgtcccaaa 27
||||||||||||||||||||||
Sbjct: 1 gaagtactccctccgtcccaaa 22
>RF00906;MIR1122;AACV01017892.1/4248-4093 39947:Oryza sativa
Japonica Group
Length = 156
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 6 gaagtactccctccgtcccaaa 27
||||||||||||||||||||||
Sbjct: 156 gaagtactccctccgtcccaaa 135
