miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;DQ154924.1/3536-3603 4571:Triticum turgidum
          Length = 68

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 11 attttggaacggagggagtataa 33
          |||||||||||||||||||||||
Sbjct: 45 attttggaacggagggagtataa 67




>RF00906;MIR1122;AY951945.1/37511-37377 4568:Triticum monococcum
          Length = 135

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 72  atatactccctccgtccgaaattactt 98
           ||||||||||||||||||||| |||||
Sbjct: 134 atatactccctccgtccgaaaatactt 108




>RF00906;MIR1122;CT009586.1/21808-21942 4565:Triticum aestivum
           (bread wheat)
          Length = 135

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 72  atatactccctccgtccgaaattactt 98
           ||||||||||||||||||||| |||||
Sbjct: 134 atatactccctccgtccgaaaatactt 108




>RF00906;MIR1122;DQ890018.1/183-48 77009:Hordeum vulgare subsp.
          spontaneum
          Length = 136

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                 
Query: 11 attttggaacggagggagtataa 33
          |||||||||||||||||||||||
Sbjct: 24 attttggaacggagggagtataa 2




>RF00906;MIR1122;AY133251.1/901-1005 112509:Hordeum vulgare subsp.
          vulgare (domesticated barley)
          Length = 105

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                 
Query: 11 attttggaacggagggagtataa 33
          |||||||||||||||||||||||
Sbjct: 24 attttggaacggagggagtataa 2




>RF00906;MIR1122;DQ445236.1/13423-13319 112509:Hordeum vulgare
          subsp. vulgare (domesticated barley)
          Length = 105

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                 
Query: 11 attttggaacggagggagtataa 33
          |||||||||||||||||||||||
Sbjct: 24 attttggaacggagggagtataa 2




>RF00906;MIR1122;AF548379.1/5968-6092 37682:Aegilops tauschii
          Length = 125

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 73 tatactccctccgtccgaaatta 95
          |||||||||||||||||||||||
Sbjct: 3  tatactccctccgtccgaaatta 25




>RF00906;MIR1122;CU302289.7/103800-103679 3880:Medicago truncatula
           (barrel medic)
          Length = 122

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 11  attttggaacggagggagtata 32
           ||||||||||||||||||||||
Sbjct: 99  attttggaacggagggagtata 120




>RF00906;MIR1122;AF427791.1/1754-1590 4513:Hordeum vulgare
          Length = 165

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 11  attttggaacggagggagtata 32
           ||||||||||||||||||||||
Sbjct: 144 attttggaacggagggagtata 165




>RF00906;MIR1122;EU379326.1/1838-1972 269377:Poa palustris
          Length = 135

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 13  tttggaacggagggagtataac 34
           ||||||||||||||||||||||
Sbjct: 114 tttggaacggagggagtataac 135