miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AJ704455.1/466-601 4513:Hordeum vulgare
Length = 136
Score = 123 bits (62), Expect = 7e-28
Identities = 112/128 (87%), Gaps = 3/128 (2%)
Strand = Plus / Minus
Query: 11 tactccctccgtcccaaaattcttgtcttaggtttgtgtagaaatgaatgtatctaaata 70
|||||||||||||||||||||||||||||| |||||| ||||||| ||||||| |||||
Sbjct: 132 tactccctccgtcccaaaattcttgtcttaagtttgtttagaaatagatgtatcaaaata 73
Query: 71 gcaaaacgtgactagatacatttatatc---acaaatctaagacaaaatatttgagacgg 127
|||||||||||||||||||| ||||| |||||| |||||||| | |||| |||||
Sbjct: 72 ctaaaacgtgactagatacattcatatctagacaaatgtaagacaagaattttgggacgg 13
Query: 128 agggagta 135
||||||||
Sbjct: 12 agggagta 5
Score = 79.8 bits (40), Expect = 9e-15
Identities = 52/56 (92%)
Strand = Plus / Plus
Query: 11 tactccctccgtcccaaaattcttgtcttaggtttgtgtagaaatgaatgtatcta 66
|||||||||||||||||||||||||||||| ||||| |||| |||||||||||||
Sbjct: 5 tactccctccgtcccaaaattcttgtcttacatttgtctagatatgaatgtatcta 60
>RF00906;MIR1122;EU096089.1/14944-15085 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 142
Score = 119 bits (60), Expect = 1e-26
Identities = 118/137 (86%), Gaps = 9/137 (6%)
Strand = Plus / Minus
Query: 8 ttatactccctccgtcccaaaattcttgtcttaggtttgtgtagaaatgaa------tgt 61
|||||||||||||||||||||||||||||||||||||||| || ||||| | |||
Sbjct: 141 ttatactccctccgtcccaaaattcttgtcttaggtttgtctataaatggatgtaggtgt 82
Query: 62 atctaaatagcaaaacgtgactagatacatttatatc---acaaatctaagacaaaatat 118
||||||||| ||||||||||||| ||||||| ||||| ||||||||||||||| | |
Sbjct: 81 atctaaataccaaaacgtgactacatacattcatatctagacaaatctaagacaagaagt 22
Query: 119 ttgagacggagggagta 135
||| |||||||||||||
Sbjct: 21 ttgggacggagggagta 5
Score = 75.8 bits (38), Expect = 1e-13
Identities = 50/54 (92%)
Strand = Plus / Plus
Query: 10 atactccctccgtcccaaaattcttgtcttaggtttgtgtagaaatgaatgtat 63
||||||||||||||||||| |||||||||||| ||||| |||| ||||||||||
Sbjct: 4 atactccctccgtcccaaacttcttgtcttagatttgtctagatatgaatgtat 57
>RF00906;MIR1122;AF427791.1/222786-222921 4513:Hordeum vulgare
Length = 136
Score = 117 bits (59), Expect = 4e-26
Identities = 115/133 (86%), Gaps = 3/133 (2%)
Strand = Plus / Minus
Query: 10 atactccctccgtcccaaaattcttgtcttaggtttgtgtagaaatgaatgtatctaaat 69
||||||||| ||||||||||||||||||||| ||||| ||||||| |||||||||| |
Sbjct: 133 atactcccttcgtcccaaaattcttgtcttaactttgtttagaaatagatgtatctaatt 74
Query: 70 agcaaaacgtgactagatacatttatatc---acaaatctaagacaaaatatttgagacg 126
| ||||| |||||||||||||| ||||| ||||||||||||||| | |||| ||||
Sbjct: 73 actaaaacttgactagatacattcatatctaaacaaatctaagacaataattttgggacg 14
Query: 127 gagggagtactag 139
|||||||||||||
Sbjct: 13 gagggagtactag 1
Score = 79.8 bits (40), Expect = 9e-15
Identities = 52/56 (92%)
Strand = Plus / Plus
Query: 11 tactccctccgtcccaaaattcttgtcttaggtttgtgtagaaatgaatgtatcta 66
||||||||||||||||||||| ||||||||| ||||| |||| |||||||||||||
Sbjct: 5 tactccctccgtcccaaaattattgtcttagatttgtttagatatgaatgtatcta 60
>RF00906;MIR1122;DQ890018.1/183-48 77009:Hordeum vulgare subsp.
spontaneum
Length = 136
Score = 109 bits (55), Expect = 1e-23
Identities = 111/129 (86%), Gaps = 3/129 (2%)
Strand = Plus / Minus
Query: 10 atactccctccgtcccaaaattcttgtcttaggtttgtgtagaaatgaatgtatctaaat 69
||||||||||||||| |||||||||||||||| ||||| ||||||| ||||||||||||
Sbjct: 133 atactccctccgtcctaaaattcttgtcttagctttgtctagaaattgatgtatctaaat 74
Query: 70 agcaaaacgtgactagatacatttatatc---acaaatctaagacaaaatatttgagacg 126
| ||||| | |||||||||||| ||||| ||||||||||||||| | |||| |||
Sbjct: 73 actaaaacttaactagatacattcatatctaaacaaatctaagacaagaattttggaacg 14
Query: 127 gagggagta 135
|||||||||
Sbjct: 13 gagggagta 5
Score = 85.7 bits (43), Expect = 2e-16
Identities = 55/59 (93%)
Strand = Plus / Plus
Query: 8 ttatactccctccgtcccaaaattcttgtcttaggtttgtgtagaaatgaatgtatcta 66
||||||||||||||| |||||||||||||||||| ||||| |||| |||||||||||||
Sbjct: 2 ttatactccctccgttccaaaattcttgtcttagatttgtttagatatgaatgtatcta 60
>RF00906;MIR1122;DQ890004.1/48-183 4513:Hordeum vulgare
Length = 136
Score = 105 bits (53), Expect = 2e-22
Identities = 94/107 (87%), Gaps = 3/107 (2%)
Strand = Plus / Plus
Query: 10 atactccctccgtcccaaaattcttgtcttaggtttgtgtagaaatgaatgtatctaaat 69
||||||||||||||| |||||||||||||||| ||||| ||||||| ||||||||||||
Sbjct: 4 atactccctccgtcctaaaattcttgtcttagctttgtctagaaattgatgtatctaaat 63
Query: 70 agcaaaacgtgactagatacatttatatc---acaaatctaagacaa 113
| ||||| | |||||||||||| ||||| |||||||||||||||
Sbjct: 64 actaaaacttaactagatacattcatatctaaacaaatctaagacaa 110
Score = 77.8 bits (39), Expect = 4e-14
Identities = 54/59 (91%)
Strand = Plus / Minus
Query: 8 ttatactccctccgtcccaaaattcttgtcttaggtttgtgtagaaatgaatgtatcta 66
||||||| ||||||| |||||||||||||||||| ||||| |||| |||||||||||||
Sbjct: 135 ttatactacctccgttccaaaattcttgtcttagatttgtttagatatgaatgtatcta 77
>RF00906;MIR1122;AP009567.1/9225-9090 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 136
Score = 97.6 bits (49), Expect = 4e-20
Identities = 93/107 (86%), Gaps = 3/107 (2%)
Strand = Plus / Minus
Query: 10 atactccctccgtcccaaaattcttgtcttaggtttgtgtagaaatgaatgtatctaaat 69
|||||||||||||| |||| ||||||||||||||||| || ||||| |||||||||||
Sbjct: 133 atactccctccgtcttaaaaatcttgtcttaggtttgtctaaaaatggttgtatctaaat 74
Query: 70 agcaaaacgtgactagatacatttatatc---acaaatctaagacaa 113
|||||||||| |||||||||| ||||| |||||||||||||||
Sbjct: 73 gtcaaaacgtgattagatacattcatatctagacaaatctaagacaa 27
Score = 67.9 bits (34), Expect = 4e-11
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 10 atactccctccgtcccaaaattcttgtcttaggtttgtgtagaaatgaatgtatctaa 67
|||||||||| ||| |||||||||||||||| ||||| |||| ||||||||||||||
Sbjct: 4 atactccctctgtcataaaattcttgtcttagatttgtctagatatgaatgtatctaa 61
>RF00906;MIR1122;AY853252.1/33762-33628 4513:Hordeum vulgare
Length = 135
Score = 89.7 bits (45), Expect = 1e-17
Identities = 111/131 (84%), Gaps = 4/131 (3%)
Strand = Plus / Minus
Query: 10 atactccctccgtcccaaaattcttgtcttaggtttgtgtagaaatgaatgtatctaaat 69
||||||||||| | |||||||||||||||||| ||||| ||||| || ||||||||||||
Sbjct: 132 atactccctccattccaaaattcttgtcttagctttgtctagaactggatgtatctaaat 73
Query: 70 agcaaaacgtgactagatacatttatatc---acaaatctaagacaaaatatttgagacg 126
| | ||| |||||||||||||| |||| |||||| |||| ||| | |||||||||
Sbjct: 72 a-ctaaatttgactagatacattcgtatctaaacaaatataaggcaagaattttgagacg 14
Query: 127 gagggagtact 137
|||||||||||
Sbjct: 13 gagggagtact 3
Score = 56.0 bits (28), Expect = 1e-07
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 11 tactccctccgtcccaaaattcttgtcttaggtttgtgtagaaatgaatgtatcta 66
||||||||||||| ||||||||||| |||| ||||| |||| | |||||||||||
Sbjct: 5 tactccctccgtctcaaaattcttgccttatatttgtttagatacgaatgtatcta 60
>RF00906;MIR1122;DQ145528.1/676-542 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 135
Score = 87.7 bits (44), Expect = 4e-17
Identities = 92/106 (86%), Gaps = 4/106 (3%)
Strand = Plus / Minus
Query: 11 tactccctccgtcccaaaattcttgtcttaggtttgtgtagaaatgaatgtatctaaata 70
||||| |||||||||||||||||||||||| || || |||||||| |||||||||||||
Sbjct: 131 tactctctccgtcccaaaattcttgtcttaaatt-gtctagaaatggatgtatctaaata 73
Query: 71 gcaaaacgtgactagatacatttatat---cacaaatctaagacaa 113
||||| |||||||||||||| |||| |||||||||||||||
Sbjct: 72 ctaaaacatgactagatacattcatatttagacaaatctaagacaa 27
Score = 60.0 bits (30), Expect = 9e-09
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 21 gtcccaaaattcttgtcttaggtttgtgtagaaatgaatgtatcta 66
||||||||||||||||||||| ||||| || | |||||||||||||
Sbjct: 15 gtcccaaaattcttgtcttagatttgtctaaatatgaatgtatcta 60
>RF00906;MIR1122;FJ374610.1/683-817 4568:Triticum monococcum
Length = 135
Score = 83.8 bits (42), Expect = 6e-16
Identities = 54/58 (93%)
Strand = Plus / Minus
Query: 10 atactccctccgtcccaaaattcttgtcttaggtttgtgtagaaatgaatgtatctaa 67
|||||||||||||||||||||||||||||||| ||||| |||| ||| ||||||||||
Sbjct: 132 atactccctccgtcccaaaattcttgtcttagatttgtctagatatggatgtatctaa 75
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 10 atactccctccgtcccaaaattcttgtcttag 41
||||||| || |||||||||||||||||||||
Sbjct: 4 atactccttctgtcccaaaattcttgtcttag 35
>RF00906;MIR1122;AF254799.1/46723-46588 4513:Hordeum vulgare
Length = 136
Score = 83.8 bits (42), Expect = 6e-16
Identities = 110/132 (83%), Gaps = 3/132 (2%)
Strand = Plus / Minus
Query: 10 atactccctccgtcccaaaattcttgtcttaggtttgtgtagaaatgaatgtatctaaat 69
||||||||||||| |||||||||||||||||| |||| || | ||| ||||||||||||
Sbjct: 133 atactccctccgttccaaaattcttgtcttagcattgtctacacatggatgtatctaaat 74
Query: 70 agcaaaacgtgactagatacatttatat---cacaaatctaagacaaaatatttgagacg 126
| ||| | |||||||||||||| |||| |||||| |||||||| | |||| ||||
Sbjct: 73 actaaaccatgactagatacattcatatatagacaaatttaagacaagaattttgggacg 14
Query: 127 gagggagtacta 138
|| |||||||||
Sbjct: 13 gaaggagtacta 2
Score = 63.9 bits (32), Expect = 6e-10
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 11 tactccctccgtcccaaaattcttgtcttaggtttgtgtagaaatgaatgtatcta 66
|||||| ||||||||||||||||||||||| ||||| || | |||||||||||||
Sbjct: 5 tactccttccgtcccaaaattcttgtcttaaatttgtctatatatgaatgtatcta 60
>RF00906;MIR1122;AF277239.1/1056-1190 37679:Heteranthelium piliferum
Length = 135
Score = 77.8 bits (39), Expect = 4e-14
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 10 atactccctccgtcccaaaattcttgtcttaggtttgtgtagaaatgaatgtatctaa 67
|||||||||||||||||||||||| ||||||| ||||| |||| |||||||| |||||
Sbjct: 132 atactccctccgtcccaaaattctngtcttagatttgtttagatatgaatgtgtctaa 75
Score = 60.0 bits (30), Expect = 9e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 10 atactccctccgtcccaaaattcttgtcttaggtttgt 47
|||||||||||||||||||||||||||| ||| |||||
Sbjct: 4 atactccctccgtcccaaaattcttgtcatagatttgt 41
>RF00906;MIR1122;DJ023121.1/176-54 4513:Hordeum vulgare
Length = 123
Score = 75.8 bits (38), Expect = 1e-13
Identities = 50/54 (92%)
Strand = Plus / Minus
Query: 17 ctccgtcccaaaattcttgtcttaggtttgtgtagaaatgaatgtatctaaata 70
||||||| |||||||||||| |||||||| | ||||||||||||||||||||||
Sbjct: 113 ctccgtctcaaaattcttgtattaggtttatctagaaatgaatgtatctaaata 60
Score = 67.9 bits (34), Expect = 4e-11
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 10 atactccctccgtcccaaaattcttgtcttaggtttgtgtagaaatgaat 59
||||||||||||||| |||||||||||||||| ||||| |||| ||||||
Sbjct: 4 atactccctccgtcctaaaattcttgtcttagatttgtctagatatgaat 53
>RF00906;MIR1122;AY887089.1/1801-1936 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 136
Score = 69.9 bits (35), Expect = 9e-12
Identities = 106/129 (82%), Gaps = 3/129 (2%)
Strand = Plus / Minus
Query: 10 atactccctccgtcccaaaattcttgtcttaggtttgtgtagaaatgaatgtatctaaat 69
|||||||||||||||||||||||||||||||| | | | |||| ||| ||| || |||||
Sbjct: 133 atactccctccgtcccaaaattcttgtcttagatgtttttagatatggatgcatttaaat 74
Query: 70 agcaaaacgtgactagatacatttatatc---acaaatctaagacaaaatatttgagacg 126
| |||| || ||||||||||| ||||| |||||| || |||| | |||||||||
Sbjct: 73 actaaaatgtaactagatacatccatatctagacaaattcaaaacaataattttgagacg 14
Query: 127 gagggagta 135
|||||||||
Sbjct: 13 gagggagta 5
>RF00906;MIR1122;EU660901.1/93085-92951 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 67.9 bits (34), Expect = 4e-11
Identities = 71/82 (86%), Gaps = 1/82 (1%)
Strand = Plus / Minus
Query: 11 tactccctccgtcccaaaattcttgtcttaggtttgtgtagaaatgaatgtatctaaata 70
|||||||||||||||||||||||||| ||| ||||| |||| | | |||||||| ||||
Sbjct: 131 tactccctccgtcccaaaattcttgttgtagctttgtctagatacggatgtatct-aata 73
Query: 71 gcaaaacgtgactagatacatt 92
||||||||||| ||||||||
Sbjct: 72 caaaaacgtgacttgatacatt 51
>RF00906;MIR1122;AY821733.1/621-487 4568:Triticum monococcum
Length = 135
Score = 67.9 bits (34), Expect = 4e-11
Identities = 109/132 (82%), Gaps = 4/132 (3%)
Strand = Plus / Minus
Query: 8 ttatactccctccgtcccaaaattcttgtcttaggtttgtgtagaaatgaatgtatctaa 67
||||||| ||||||| |||||||||||||||||| |||| |||| | | |||||||| |
Sbjct: 134 ttatacttcctccgttccaaaattcttgtcttagatttgcctagatacggatgtatct-a 76
Query: 68 atagcaaaacgtgactagatacatttatat---cacaaatctaagacaaaatatttgaga 124
||| ||||||||||| ||||||| ||| ||||||||||||||| | |||| ||
Sbjct: 75 atactaaaacgtgacttgatacatccgtatttagacaaatctaagacaagaattttggga 16
Query: 125 cggagggagtac 136
||||||||||||
Sbjct: 15 cggagggagtac 4
Score = 65.9 bits (33), Expect = 1e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 11 tactccctccgtcccaaaattcttgtcttaggtttgt 47
||||||||||||||||||||||||||||||| |||||
Sbjct: 5 tactccctccgtcccaaaattcttgtcttagatttgt 41
>RF00906;MIR1122;EU626553.1/30213-30109 4572:Triticum urartu
Length = 105
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 11 tactccctccgtcccaaaattcttgtcttag 41
|||||||||||||||||||||||||||||||
Sbjct: 101 tactccctccgtcccaaaattcttgtcttag 71
>RF00906;MIR1122;AM932686.1/57613-57747 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 60.0 bits (30), Expect = 9e-09
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 11 tactccctccgtcccaaaattcttgtcttaggtttgtgtaga 52
||||||||| ||||||||||||||||||||| ||||| ||||
Sbjct: 5 tactccctcggtcccaaaattcttgtcttagatttgtctaga 46
Score = 56.0 bits (28), Expect = 1e-07
Identities = 106/130 (81%), Gaps = 4/130 (3%)
Strand = Plus / Minus
Query: 11 tactccctccgtcccaaaattcttgtcttaggtttgtgtagaaatgaatgtatctaaata 70
||||||||| |||||||| |||||||||||| ||||| |||| | |||||||| ||||
Sbjct: 131 tactccctctgtcccaaatttcttgtcttagatttgtctagatacagatgtatct-aata 73
Query: 71 gcaaaacgtgactagatacatttatatc---acaaatctaagacaaaatatttgagacgg 127
|||| |||||| ||||||| |||| ||||||||||||||| | |||| ||| |
Sbjct: 72 cgaaaatgtgacttgatacatccgtatctagacaaatctaagacaagaattttgggaccg 13
Query: 128 agggagtact 137
||||||||||
Sbjct: 12 agggagtact 3
>RF00906;MIR1122;EU660895.1/53244-53110 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 58.0 bits (29), Expect = 3e-08
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 11 tactccctccgtcccaaaattcttgtcttaggtttgt 47
|||||||||| |||||||||||||||||||| |||||
Sbjct: 131 tactccctccatcccaaaattcttgtcttagatttgt 95
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 10 atactccctccgtcccaaaattcttgtctta 40
|||||||||||||| ||||||||||||||||
Sbjct: 4 atactccctccgtctcaaaattcttgtctta 34
>RF00906;MIR1122;X73528.1/281-181 4565:Triticum aestivum (bread
wheat)
Length = 101
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 10 atactccctccgtcccaaaattcttgtcttaggtttgt 47
||||||||| ||| |||||||||||||||||| |||||
Sbjct: 4 atactcccttcgttccaaaattcttgtcttagatttgt 41
Score = 44.1 bits (22), Expect = 5e-04
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 11 tactccctccgtcccaaaattcttgtcttaggtttgtgtaga 52
|||||||||| || |||||||||||||||| ||||| ||||
Sbjct: 97 tactccctccatcttaaaattcttgtcttagatttgtctaga 56
>RF00906;MIR1122;EF540321.1/52965-52831 4571:Triticum turgidum
Length = 135
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 15 ccctccgtcccaaaattcttgtctta 40
||||||||||||||||||||||||||
Sbjct: 127 ccctccgtcccaaaattcttgtctta 102
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 tccctccgtcccaaaattcttgtctta 40
||||||| |||||||||||||||||||
Sbjct: 8 tccctccatcccaaaattcttgtctta 34
>RF00906;MIR1122;AY485644.1/84291-84425 4568:Triticum monococcum
Length = 135
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 11 tactccctccgtcccaaaattcttgtctta 40
||||||||||||||||||||| ||||||||
Sbjct: 5 tactccctccgtcccaaaattgttgtctta 34
Score = 52.0 bits (26), Expect = 2e-06
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 14 tccctccgtcccaaaattcttgtcttaggtttgtgtagaaatgaatgtatctaa 67
||||||| ||||||||||||||||||| ||||| |||| | | ||||||||||
Sbjct: 128 tccctccatcccaaaattcttgtcttacatttgtttagatacggatgtatctaa 75
>RF00906;MIR1122;AY853252.1/217307-217173 4513:Hordeum vulgare
Length = 135
Score = 50.1 bits (25), Expect = 8e-06
Identities = 68/81 (83%), Gaps = 1/81 (1%)
Strand = Plus / Minus
Query: 11 tactccctccgtcccaaaattcttgtcttaggtttgtgtagaaatgaatgtatctaaata 70
|||| ||||||||||||||||||||||| | ||| | |||| | | |||||||| || |
Sbjct: 131 tactacctccgtcccaaaattcttgtctaggatttatctagatacggatgtatct-aaca 73
Query: 71 gcaaaacgtgactagatacat 91
|||||||||||||||||||
Sbjct: 72 ctaaaacgtgactagatacat 52
>RF00906;MIR1122;AY235466.1/780-656 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 10 atactccctccgtcccaaaattcttgtc 37
||||||||||||||||||||| ||||||
Sbjct: 122 atactccctccgtcccaaaatacttgtc 95
>RF00906;MIR1122;AY235464.1/714-838 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 10 atactccctccgtcccaaaattcttgtc 37
||||||||||||||||||||| ||||||
Sbjct: 4 atactccctccgtcccaaaatacttgtc 31
>RF00906;MIR1122;AAAA02029963.1/5445-5312 39946:Oryza sativa Indica
Group
Length = 134
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 7 tttatactccctccgtcccaaaat 30
||||||||||||||||||||||||
Sbjct: 134 tttatactccctccgtcccaaaat 111
>RF00906;MIR1122;AP008216.1/16569819-16569686 39947:Oryza sativa
Japonica Group
Length = 134
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 7 tttatactccctccgtcccaaaat 30
||||||||||||||||||||||||
Sbjct: 134 tttatactccctccgtcccaaaat 111
>RF00906;MIR1122;AY491681.1/77211-77302 4568:Triticum monococcum
Length = 92
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 8 ttatactccctccgtcccaaaat 30
|||||||||||||||||||||||
Sbjct: 91 ttatactccctccgtcccaaaat 69
>RF00906;MIR1122;FJ184990.1/3303-3406 4565:Triticum aestivum
(bread wheat)
Length = 104
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 ttatactccctccgtcccaaaat 30
|||||||||||||||||||||||
Sbjct: 2 ttatactccctccgtcccaaaat 24
>RF00906;MIR1122;AF488415.1/78603-78755 4568:Triticum monococcum
Length = 153
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 8 ttatactccctccgtcccaaaat 30
|||||||||||||||||||||||
Sbjct: 152 ttatactccctccgtcccaaaat 130
>RF00906;MIR1122;FJ491378.1/4581-4466 4550:Secale cereale (rye)
Length = 116
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 8 ttatactccctccgtcccaaaat 30
|||||||||||||||||||||||
Sbjct: 115 ttatactccctccgtcccaaaat 93
>RF00906;MIR1122;AF521177.1/81577-81474 4513:Hordeum vulgare
Length = 104
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 8 ttatactccctccgtcccaaaat 30
|||||||||||||||||||||||
Sbjct: 103 ttatactccctccgtcccaaaat 81
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 ttatactccctccgtcccaaaat 30
|||||||||||||||||||||||
Sbjct: 2 ttatactccctccgtcccaaaat 24
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 ttatactccctccgtcccaaaat 30
|||||||||||||||||||||||
Sbjct: 2 ttatactccctccgtcccaaaat 24
>RF00906;MIR1122;EU282251.1/1314-1209 52152:Elymus repens
Length = 106
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 8 ttatactccctccgtcccaaaat 30
|||||||||||||||||||||||
Sbjct: 105 ttatactccctccgtcccaaaat 83
>RF00906;MIR1122;AL831801.4/77594-77709 4530:Oryza sativa (rice)
Length = 116
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 ttatactccctccgtcccaaaat 30
|||||||||||||||||||||||
Sbjct: 2 ttatactccctccgtcccaaaat 24
>RF00906;MIR1122;AK288546.1/1340-1246 39947:Oryza sativa Japonica
Group
Length = 95
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 8 ttatactccctccgtcccaaaat 30
|||||||||||||||||||||||
Sbjct: 94 ttatactccctccgtcccaaaat 72
>RF00906;MIR1122;AAAA02007660.1/3740-3838 39946:Oryza sativa
Indica Group
Length = 99
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 ttatactccctccgtcccaaaat 30
|||||||||||||||||||||||
Sbjct: 2 ttatactccctccgtcccaaaat 24
>RF00906;MIR1122;U29095.1/333-439 4565:Triticum aestivum (bread
wheat)
Length = 107
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 tatactccctccgtcccaaaat 30
||||||||||||||||||||||
Sbjct: 3 tatactccctccgtcccaaaat 24
>RF00906;MIR1122;AJ400714.1/3663-3767 4565:Triticum aestivum (bread
wheat)
Length = 105
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 9 tatactccctccgtcccaaaat 30
||||||||||||||||||||||
Sbjct: 103 tatactccctccgtcccaaaat 82
>RF00906;MIR1122;DQ267106.1/62901-62968 4572:Triticum urartu
Length = 68
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 tatactccctccgtcccaaaat 30
||||||||||||||||||||||
Sbjct: 3 tatactccctccgtcccaaaat 24
>RF00906;MIR1122;DQ175992.1/50-154 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 11 tactccctccgtcccaaaattcttgtctta 40
|||||||||||||||||||| ||||||||
Sbjct: 101 tactccctccgtcccaaaataattgtctta 72
>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 9 tatactccctccgtcccaaaat 30
||||||||||||||||||||||
Sbjct: 103 tatactccctccgtcccaaaat 82
>RF00906;MIR1122;AF525764.1/4346-4235 200361:Aegilops tauschii
subsp. strangulata
Length = 112
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 8 ttatactccctccgtcccaaaattcttgtc 37
||||||||||||||||| |||| |||||||
Sbjct: 111 ttatactccctccgtccgaaaaatcttgtc 82
>RF00906;MIR1122;EU730902.1/127235-127359 15368:Brachypodium
distachyon
Length = 125
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 9 tatactccctccgtcccaaaattcttgtct 38
|||||||||||||| ||| |||||||||||
Sbjct: 123 tatactccctccgttccataattcttgtct 94
>RF00906;MIR1122;AAAA02007259.1/4313-4455 39946:Oryza sativa
Indica Group
Length = 143
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 tatactccctccgtcccaaaat 30
||||||||||||||||||||||
Sbjct: 3 tatactccctccgtcccaaaat 24
>RF00906;MIR1122;AAAA02003593.1/26423-26497 39946:Oryza sativa
Indica Group
Length = 75
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 9 tatactccctccgtcccaaaat 30
||||||||||||||||||||||
Sbjct: 73 tatactccctccgtcccaaaat 52
>RF00906;MIR1122;AAAA02000966.1/612-453 39946:Oryza sativa Indica
Group
Length = 160
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 tatactccctccgtcccaaaat 30
||||||||||||||||||||||
Sbjct: 3 tatactccctccgtcccaaaat 24
>RF00906;MIR1122;AC111016.2/25572-25452 39947:Oryza sativa Japonica
Group
Length = 121
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 9 tatactccctccgtcccaaaat 30
||||||||||||||||||||||
Sbjct: 119 tatactccctccgtcccaaaat 98
>RF00906;MIR1122;AP004047.3/87830-87972 39947:Oryza sativa
Japonica Group
Length = 143
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 tatactccctccgtcccaaaat 30
||||||||||||||||||||||
Sbjct: 3 tatactccctccgtcccaaaat 24
>RF00906;MIR1122;AC232160.1/3827-3951 63629:Oryza minuta
Length = 125
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 tatactccctccgtcccaaaat 30
||||||||||||||||||||||
Sbjct: 3 tatactccctccgtcccaaaat 24
>RF00906;MIR1122;AC226266.1/92361-92224 63629:Oryza minuta
Length = 138
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 9 tatactccctccgtcccaaaat 30
||||||||||||||||||||||
Sbjct: 136 tatactccctccgtcccaaaat 115
>RF00906;MIR1122;AP008218.1/2340117-2339983 39947:Oryza sativa
Japonica Group
Length = 135
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 tatactccctccgtcccaaaat 30
||||||||||||||||||||||
Sbjct: 3 tatactccctccgtcccaaaat 24
>RF00906;MIR1122;AC210491.1/95749-95858 4538:Oryza glaberrima
(African rice)
Length = 110
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 9 tatactccctccgtcccaaaat 30
||||||||||||||||||||||
Sbjct: 108 tatactccctccgtcccaaaat 87
>RF00906;MIR1122;AAAA02017235.1/6057-5946 39946:Oryza sativa
Indica Group
Length = 112
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 tatactccctccgtcccaaaat 30
||||||||||||||||||||||
Sbjct: 3 tatactccctccgtcccaaaat 24
>RF00906;MIR1122;AC137999.2/12932-12822 39947:Oryza sativa
Japonica Group
Length = 111
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 tatactccctccgtcccaaaat 30
||||||||||||||||||||||
Sbjct: 3 tatactccctccgtcccaaaat 24
>RF00906;MIR1122;AP008208.1/1166338-1166449 39947:Oryza sativa
Japonica Group
Length = 112
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 9 tatactccctccgtcccaaaat 30
||||||||||||||||||||||
Sbjct: 110 tatactccctccgtcccaaaat 89
>RF00906;MIR1122;AACV01023551.1/12075-12186 39947:Oryza sativa
Japonica Group
Length = 112
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 tatactccctccgtcccaaaat 30
||||||||||||||||||||||
Sbjct: 3 tatactccctccgtcccaaaat 24
>RF00906;MIR1122;AP003760.4/5605-5476 39947:Oryza sativa Japonica
Group
Length = 130
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 9 tatactccctccgtcccaaaat 30
||||||||||||||||||||||
Sbjct: 128 tatactccctccgtcccaaaat 107
>RF00906;MIR1122;AAAA02004295.1/15025-15180 39946:Oryza sativa
Indica Group
Length = 156
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 9 tatactccctccgtcccaaaat 30
||||||||||||||||||||||
Sbjct: 154 tatactccctccgtcccaaaat 133
>RF00906;MIR1122;AAAA02006274.1/23456-23551 39946:Oryza sativa
Indica Group
Length = 96
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 9 tatactccctccgtcccaaaat 30
||||||||||||||||||||||
Sbjct: 94 tatactccctccgtcccaaaat 73
>RF00906;MIR1122;AP008215.1/19940245-19940356 39947:Oryza sativa
Japonica Group
Length = 112
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 9 tatactccctccgtcccaaaat 30
||||||||||||||||||||||
Sbjct: 110 tatactccctccgtcccaaaat 89
>RF00906;MIR1122;AL831796.5/20323-20408 4530:Oryza sativa (rice)
Length = 86
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 9 tatactccctccgtcccaaaat 30
||||||||||||||||||||||
Sbjct: 84 tatactccctccgtcccaaaat 63
>RF00906;MIR1122;AP003381.3/77030-76947 39947:Oryza sativa
Japonica Group
Length = 84
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 tatactccctccgtcccaaaat 30
||||||||||||||||||||||
Sbjct: 3 tatactccctccgtcccaaaat 24
>RF00906;MIR1122;AC093953.2/44822-44955 39947:Oryza sativa Japonica
Group
Length = 134
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 9 tatactccctccgtcccaaaat 30
||||||||||||||||||||||
Sbjct: 132 tatactccctccgtcccaaaat 111
>RF00906;MIR1122;AK288180.1/1387-1262 39947:Oryza sativa Japonica
Group
Length = 126
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 9 tatactccctccgtcccaaaat 30
||||||||||||||||||||||
Sbjct: 124 tatactccctccgtcccaaaat 103