miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AJ704455.1/466-601 4513:Hordeum vulgare
          Length = 136

 Score =  123 bits (62), Expect = 7e-28
 Identities = 112/128 (87%), Gaps = 3/128 (2%)
 Strand = Plus / Minus

                                                                       
Query: 11  tactccctccgtcccaaaattcttgtcttaggtttgtgtagaaatgaatgtatctaaata 70
           |||||||||||||||||||||||||||||| |||||| |||||||  ||||||| |||||
Sbjct: 132 tactccctccgtcccaaaattcttgtcttaagtttgtttagaaatagatgtatcaaaata 73

                                                                       
Query: 71  gcaaaacgtgactagatacatttatatc---acaaatctaagacaaaatatttgagacgg 127
             |||||||||||||||||||| |||||   |||||| |||||||| |  |||| |||||
Sbjct: 72  ctaaaacgtgactagatacattcatatctagacaaatgtaagacaagaattttgggacgg 13

                   
Query: 128 agggagta 135
           ||||||||
Sbjct: 12  agggagta 5



 Score = 79.8 bits (40), Expect = 9e-15
 Identities = 52/56 (92%)
 Strand = Plus / Plus

                                                                  
Query: 11 tactccctccgtcccaaaattcttgtcttaggtttgtgtagaaatgaatgtatcta 66
          ||||||||||||||||||||||||||||||  ||||| |||| |||||||||||||
Sbjct: 5  tactccctccgtcccaaaattcttgtcttacatttgtctagatatgaatgtatcta 60




>RF00906;MIR1122;EU096089.1/14944-15085 112509:Hordeum vulgare
           subsp. vulgare (domesticated barley)
          Length = 142

 Score =  119 bits (60), Expect = 1e-26
 Identities = 118/137 (86%), Gaps = 9/137 (6%)
 Strand = Plus / Minus

                                                                       
Query: 8   ttatactccctccgtcccaaaattcttgtcttaggtttgtgtagaaatgaa------tgt 61
           |||||||||||||||||||||||||||||||||||||||| || ||||| |      |||
Sbjct: 141 ttatactccctccgtcccaaaattcttgtcttaggtttgtctataaatggatgtaggtgt 82

                                                                       
Query: 62  atctaaatagcaaaacgtgactagatacatttatatc---acaaatctaagacaaaatat 118
           ||||||||| ||||||||||||| ||||||| |||||   ||||||||||||||| |  |
Sbjct: 81  atctaaataccaaaacgtgactacatacattcatatctagacaaatctaagacaagaagt 22

                            
Query: 119 ttgagacggagggagta 135
           ||| |||||||||||||
Sbjct: 21  ttgggacggagggagta 5



 Score = 75.8 bits (38), Expect = 1e-13
 Identities = 50/54 (92%)
 Strand = Plus / Plus

                                                                
Query: 10 atactccctccgtcccaaaattcttgtcttaggtttgtgtagaaatgaatgtat 63
          ||||||||||||||||||| |||||||||||| ||||| |||| ||||||||||
Sbjct: 4  atactccctccgtcccaaacttcttgtcttagatttgtctagatatgaatgtat 57




>RF00906;MIR1122;AF427791.1/222786-222921 4513:Hordeum vulgare
          Length = 136

 Score =  117 bits (59), Expect = 4e-26
 Identities = 115/133 (86%), Gaps = 3/133 (2%)
 Strand = Plus / Minus

                                                                       
Query: 10  atactccctccgtcccaaaattcttgtcttaggtttgtgtagaaatgaatgtatctaaat 69
           ||||||||| |||||||||||||||||||||  ||||| |||||||  |||||||||| |
Sbjct: 133 atactcccttcgtcccaaaattcttgtcttaactttgtttagaaatagatgtatctaatt 74

                                                                       
Query: 70  agcaaaacgtgactagatacatttatatc---acaaatctaagacaaaatatttgagacg 126
           |  ||||| |||||||||||||| |||||   ||||||||||||||| |  |||| ||||
Sbjct: 73  actaaaacttgactagatacattcatatctaaacaaatctaagacaataattttgggacg 14

                        
Query: 127 gagggagtactag 139
           |||||||||||||
Sbjct: 13  gagggagtactag 1



 Score = 79.8 bits (40), Expect = 9e-15
 Identities = 52/56 (92%)
 Strand = Plus / Plus

                                                                  
Query: 11 tactccctccgtcccaaaattcttgtcttaggtttgtgtagaaatgaatgtatcta 66
          ||||||||||||||||||||| ||||||||| ||||| |||| |||||||||||||
Sbjct: 5  tactccctccgtcccaaaattattgtcttagatttgtttagatatgaatgtatcta 60




>RF00906;MIR1122;DQ890018.1/183-48 77009:Hordeum vulgare subsp.
           spontaneum
          Length = 136

 Score =  109 bits (55), Expect = 1e-23
 Identities = 111/129 (86%), Gaps = 3/129 (2%)
 Strand = Plus / Minus

                                                                       
Query: 10  atactccctccgtcccaaaattcttgtcttaggtttgtgtagaaatgaatgtatctaaat 69
           ||||||||||||||| |||||||||||||||| ||||| |||||||  ||||||||||||
Sbjct: 133 atactccctccgtcctaaaattcttgtcttagctttgtctagaaattgatgtatctaaat 74

                                                                       
Query: 70  agcaaaacgtgactagatacatttatatc---acaaatctaagacaaaatatttgagacg 126
           |  ||||| | |||||||||||| |||||   ||||||||||||||| |  ||||  |||
Sbjct: 73  actaaaacttaactagatacattcatatctaaacaaatctaagacaagaattttggaacg 14

                    
Query: 127 gagggagta 135
           |||||||||
Sbjct: 13  gagggagta 5



 Score = 85.7 bits (43), Expect = 2e-16
 Identities = 55/59 (93%)
 Strand = Plus / Plus

                                                                     
Query: 8  ttatactccctccgtcccaaaattcttgtcttaggtttgtgtagaaatgaatgtatcta 66
          ||||||||||||||| |||||||||||||||||| ||||| |||| |||||||||||||
Sbjct: 2  ttatactccctccgttccaaaattcttgtcttagatttgtttagatatgaatgtatcta 60




>RF00906;MIR1122;DQ890004.1/48-183 4513:Hordeum vulgare
          Length = 136

 Score =  105 bits (53), Expect = 2e-22
 Identities = 94/107 (87%), Gaps = 3/107 (2%)
 Strand = Plus / Plus

                                                                       
Query: 10  atactccctccgtcccaaaattcttgtcttaggtttgtgtagaaatgaatgtatctaaat 69
           ||||||||||||||| |||||||||||||||| ||||| |||||||  ||||||||||||
Sbjct: 4   atactccctccgtcctaaaattcttgtcttagctttgtctagaaattgatgtatctaaat 63

                                                          
Query: 70  agcaaaacgtgactagatacatttatatc---acaaatctaagacaa 113
           |  ||||| | |||||||||||| |||||   |||||||||||||||
Sbjct: 64  actaaaacttaactagatacattcatatctaaacaaatctaagacaa 110



 Score = 77.8 bits (39), Expect = 4e-14
 Identities = 54/59 (91%)
 Strand = Plus / Minus

                                                                      
Query: 8   ttatactccctccgtcccaaaattcttgtcttaggtttgtgtagaaatgaatgtatcta 66
           ||||||| ||||||| |||||||||||||||||| ||||| |||| |||||||||||||
Sbjct: 135 ttatactacctccgttccaaaattcttgtcttagatttgtttagatatgaatgtatcta 77




>RF00906;MIR1122;AP009567.1/9225-9090 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 136

 Score = 97.6 bits (49), Expect = 4e-20
 Identities = 93/107 (86%), Gaps = 3/107 (2%)
 Strand = Plus / Minus

                                                                       
Query: 10  atactccctccgtcccaaaattcttgtcttaggtttgtgtagaaatgaatgtatctaaat 69
           ||||||||||||||  |||| ||||||||||||||||| || |||||  |||||||||||
Sbjct: 133 atactccctccgtcttaaaaatcttgtcttaggtttgtctaaaaatggttgtatctaaat 74

                                                          
Query: 70  agcaaaacgtgactagatacatttatatc---acaaatctaagacaa 113
             |||||||||| |||||||||| |||||   |||||||||||||||
Sbjct: 73  gtcaaaacgtgattagatacattcatatctagacaaatctaagacaa 27



 Score = 67.9 bits (34), Expect = 4e-11
 Identities = 52/58 (89%)
 Strand = Plus / Plus

                                                                    
Query: 10 atactccctccgtcccaaaattcttgtcttaggtttgtgtagaaatgaatgtatctaa 67
          |||||||||| |||  |||||||||||||||| ||||| |||| ||||||||||||||
Sbjct: 4  atactccctctgtcataaaattcttgtcttagatttgtctagatatgaatgtatctaa 61




>RF00906;MIR1122;AY853252.1/33762-33628 4513:Hordeum vulgare
          Length = 135

 Score = 89.7 bits (45), Expect = 1e-17
 Identities = 111/131 (84%), Gaps = 4/131 (3%)
 Strand = Plus / Minus

                                                                       
Query: 10  atactccctccgtcccaaaattcttgtcttaggtttgtgtagaaatgaatgtatctaaat 69
           ||||||||||| | |||||||||||||||||| ||||| ||||| || ||||||||||||
Sbjct: 132 atactccctccattccaaaattcttgtcttagctttgtctagaactggatgtatctaaat 73

                                                                       
Query: 70  agcaaaacgtgactagatacatttatatc---acaaatctaagacaaaatatttgagacg 126
           | | |||  ||||||||||||||  ||||   |||||| |||| ||| |  |||||||||
Sbjct: 72  a-ctaaatttgactagatacattcgtatctaaacaaatataaggcaagaattttgagacg 14

                      
Query: 127 gagggagtact 137
           |||||||||||
Sbjct: 13  gagggagtact 3



 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 49/56 (87%)
 Strand = Plus / Plus

                                                                  
Query: 11 tactccctccgtcccaaaattcttgtcttaggtttgtgtagaaatgaatgtatcta 66
          ||||||||||||| ||||||||||| ||||  ||||| |||| | |||||||||||
Sbjct: 5  tactccctccgtctcaaaattcttgccttatatttgtttagatacgaatgtatcta 60




>RF00906;MIR1122;DQ145528.1/676-542 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 135

 Score = 87.7 bits (44), Expect = 4e-17
 Identities = 92/106 (86%), Gaps = 4/106 (3%)
 Strand = Plus / Minus

                                                                       
Query: 11  tactccctccgtcccaaaattcttgtcttaggtttgtgtagaaatgaatgtatctaaata 70
           ||||| ||||||||||||||||||||||||  || || |||||||| |||||||||||||
Sbjct: 131 tactctctccgtcccaaaattcttgtcttaaatt-gtctagaaatggatgtatctaaata 73

                                                         
Query: 71  gcaaaacgtgactagatacatttatat---cacaaatctaagacaa 113
             ||||| |||||||||||||| ||||    |||||||||||||||
Sbjct: 72  ctaaaacatgactagatacattcatatttagacaaatctaagacaa 27



 Score = 60.0 bits (30), Expect = 9e-09
 Identities = 42/46 (91%)
 Strand = Plus / Plus

                                                        
Query: 21 gtcccaaaattcttgtcttaggtttgtgtagaaatgaatgtatcta 66
          ||||||||||||||||||||| ||||| || | |||||||||||||
Sbjct: 15 gtcccaaaattcttgtcttagatttgtctaaatatgaatgtatcta 60




>RF00906;MIR1122;FJ374610.1/683-817 4568:Triticum monococcum
          Length = 135

 Score = 83.8 bits (42), Expect = 6e-16
 Identities = 54/58 (93%)
 Strand = Plus / Minus

                                                                     
Query: 10  atactccctccgtcccaaaattcttgtcttaggtttgtgtagaaatgaatgtatctaa 67
           |||||||||||||||||||||||||||||||| ||||| |||| ||| ||||||||||
Sbjct: 132 atactccctccgtcccaaaattcttgtcttagatttgtctagatatggatgtatctaa 75



 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                          
Query: 10 atactccctccgtcccaaaattcttgtcttag 41
          ||||||| || |||||||||||||||||||||
Sbjct: 4  atactccttctgtcccaaaattcttgtcttag 35




>RF00906;MIR1122;AF254799.1/46723-46588 4513:Hordeum vulgare
          Length = 136

 Score = 83.8 bits (42), Expect = 6e-16
 Identities = 110/132 (83%), Gaps = 3/132 (2%)
 Strand = Plus / Minus

                                                                       
Query: 10  atactccctccgtcccaaaattcttgtcttaggtttgtgtagaaatgaatgtatctaaat 69
           ||||||||||||| ||||||||||||||||||  |||| || | ||| ||||||||||||
Sbjct: 133 atactccctccgttccaaaattcttgtcttagcattgtctacacatggatgtatctaaat 74

                                                                       
Query: 70  agcaaaacgtgactagatacatttatat---cacaaatctaagacaaaatatttgagacg 126
           |  ||| | |||||||||||||| ||||    |||||| |||||||| |  |||| ||||
Sbjct: 73  actaaaccatgactagatacattcatatatagacaaatttaagacaagaattttgggacg 14

                       
Query: 127 gagggagtacta 138
           || |||||||||
Sbjct: 13  gaaggagtacta 2



 Score = 63.9 bits (32), Expect = 6e-10
 Identities = 50/56 (89%)
 Strand = Plus / Plus

                                                                  
Query: 11 tactccctccgtcccaaaattcttgtcttaggtttgtgtagaaatgaatgtatcta 66
          |||||| |||||||||||||||||||||||  ||||| || | |||||||||||||
Sbjct: 5  tactccttccgtcccaaaattcttgtcttaaatttgtctatatatgaatgtatcta 60




>RF00906;MIR1122;AF277239.1/1056-1190 37679:Heteranthelium piliferum
          Length = 135

 Score = 77.8 bits (39), Expect = 4e-14
 Identities = 53/58 (91%)
 Strand = Plus / Minus

                                                                     
Query: 10  atactccctccgtcccaaaattcttgtcttaggtttgtgtagaaatgaatgtatctaa 67
           |||||||||||||||||||||||| ||||||| ||||| |||| |||||||| |||||
Sbjct: 132 atactccctccgtcccaaaattctngtcttagatttgtttagatatgaatgtgtctaa 75



 Score = 60.0 bits (30), Expect = 9e-09
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                
Query: 10 atactccctccgtcccaaaattcttgtcttaggtttgt 47
          |||||||||||||||||||||||||||| ||| |||||
Sbjct: 4  atactccctccgtcccaaaattcttgtcatagatttgt 41




>RF00906;MIR1122;DJ023121.1/176-54 4513:Hordeum vulgare
          Length = 123

 Score = 75.8 bits (38), Expect = 1e-13
 Identities = 50/54 (92%)
 Strand = Plus / Minus

                                                                 
Query: 17  ctccgtcccaaaattcttgtcttaggtttgtgtagaaatgaatgtatctaaata 70
           ||||||| |||||||||||| |||||||| | ||||||||||||||||||||||
Sbjct: 113 ctccgtctcaaaattcttgtattaggtttatctagaaatgaatgtatctaaata 60



 Score = 67.9 bits (34), Expect = 4e-11
 Identities = 46/50 (92%)
 Strand = Plus / Plus

                                                            
Query: 10 atactccctccgtcccaaaattcttgtcttaggtttgtgtagaaatgaat 59
          ||||||||||||||| |||||||||||||||| ||||| |||| ||||||
Sbjct: 4  atactccctccgtcctaaaattcttgtcttagatttgtctagatatgaat 53




>RF00906;MIR1122;AY887089.1/1801-1936 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 136

 Score = 69.9 bits (35), Expect = 9e-12
 Identities = 106/129 (82%), Gaps = 3/129 (2%)
 Strand = Plus / Minus

                                                                       
Query: 10  atactccctccgtcccaaaattcttgtcttaggtttgtgtagaaatgaatgtatctaaat 69
           |||||||||||||||||||||||||||||||| | | | |||| ||| ||| || |||||
Sbjct: 133 atactccctccgtcccaaaattcttgtcttagatgtttttagatatggatgcatttaaat 74

                                                                       
Query: 70  agcaaaacgtgactagatacatttatatc---acaaatctaagacaaaatatttgagacg 126
           |  |||| || |||||||||||  |||||   ||||||  || |||| |  |||||||||
Sbjct: 73  actaaaatgtaactagatacatccatatctagacaaattcaaaacaataattttgagacg 14

                    
Query: 127 gagggagta 135
           |||||||||
Sbjct: 13  gagggagta 5




>RF00906;MIR1122;EU660901.1/93085-92951 4565:Triticum aestivum
           (bread wheat)
          Length = 135

 Score = 67.9 bits (34), Expect = 4e-11
 Identities = 71/82 (86%), Gaps = 1/82 (1%)
 Strand = Plus / Minus

                                                                       
Query: 11  tactccctccgtcccaaaattcttgtcttaggtttgtgtagaaatgaatgtatctaaata 70
           ||||||||||||||||||||||||||  ||| ||||| |||| | | |||||||| ||||
Sbjct: 131 tactccctccgtcccaaaattcttgttgtagctttgtctagatacggatgtatct-aata 73

                                 
Query: 71  gcaaaacgtgactagatacatt 92
             ||||||||||| ||||||||
Sbjct: 72  caaaaacgtgacttgatacatt 51




>RF00906;MIR1122;AY821733.1/621-487 4568:Triticum monococcum
          Length = 135

 Score = 67.9 bits (34), Expect = 4e-11
 Identities = 109/132 (82%), Gaps = 4/132 (3%)
 Strand = Plus / Minus

                                                                       
Query: 8   ttatactccctccgtcccaaaattcttgtcttaggtttgtgtagaaatgaatgtatctaa 67
           ||||||| ||||||| |||||||||||||||||| ||||  |||| | | |||||||| |
Sbjct: 134 ttatacttcctccgttccaaaattcttgtcttagatttgcctagatacggatgtatct-a 76

                                                                       
Query: 68  atagcaaaacgtgactagatacatttatat---cacaaatctaagacaaaatatttgaga 124
           |||  ||||||||||| |||||||   |||    ||||||||||||||| |  |||| ||
Sbjct: 75  atactaaaacgtgacttgatacatccgtatttagacaaatctaagacaagaattttggga 16

                       
Query: 125 cggagggagtac 136
           ||||||||||||
Sbjct: 15  cggagggagtac 4



 Score = 65.9 bits (33), Expect = 1e-10
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                               
Query: 11 tactccctccgtcccaaaattcttgtcttaggtttgt 47
          ||||||||||||||||||||||||||||||| |||||
Sbjct: 5  tactccctccgtcccaaaattcttgtcttagatttgt 41




>RF00906;MIR1122;EU626553.1/30213-30109 4572:Triticum urartu
          Length = 105

 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                          
Query: 11  tactccctccgtcccaaaattcttgtcttag 41
           |||||||||||||||||||||||||||||||
Sbjct: 101 tactccctccgtcccaaaattcttgtcttag 71




>RF00906;MIR1122;AM932686.1/57613-57747 4565:Triticum aestivum
          (bread wheat)
          Length = 135

 Score = 60.0 bits (30), Expect = 9e-09
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                    
Query: 11 tactccctccgtcccaaaattcttgtcttaggtttgtgtaga 52
          ||||||||| ||||||||||||||||||||| ||||| ||||
Sbjct: 5  tactccctcggtcccaaaattcttgtcttagatttgtctaga 46



 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 106/130 (81%), Gaps = 4/130 (3%)
 Strand = Plus / Minus

                                                                       
Query: 11  tactccctccgtcccaaaattcttgtcttaggtttgtgtagaaatgaatgtatctaaata 70
           ||||||||| |||||||| |||||||||||| ||||| |||| |   |||||||| ||||
Sbjct: 131 tactccctctgtcccaaatttcttgtcttagatttgtctagatacagatgtatct-aata 73

                                                                       
Query: 71  gcaaaacgtgactagatacatttatatc---acaaatctaagacaaaatatttgagacgg 127
             |||| |||||| |||||||   ||||   ||||||||||||||| |  |||| ||| |
Sbjct: 72  cgaaaatgtgacttgatacatccgtatctagacaaatctaagacaagaattttgggaccg 13

                     
Query: 128 agggagtact 137
           ||||||||||
Sbjct: 12  agggagtact 3




>RF00906;MIR1122;EU660895.1/53244-53110 4565:Triticum aestivum
           (bread wheat)
          Length = 135

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                
Query: 11  tactccctccgtcccaaaattcttgtcttaggtttgt 47
           |||||||||| |||||||||||||||||||| |||||
Sbjct: 131 tactccctccatcccaaaattcttgtcttagatttgt 95



 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 10 atactccctccgtcccaaaattcttgtctta 40
          |||||||||||||| ||||||||||||||||
Sbjct: 4  atactccctccgtctcaaaattcttgtctta 34




>RF00906;MIR1122;X73528.1/281-181 4565:Triticum aestivum (bread
          wheat)
          Length = 101

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                
Query: 10 atactccctccgtcccaaaattcttgtcttaggtttgt 47
          ||||||||| ||| |||||||||||||||||| |||||
Sbjct: 4  atactcccttcgttccaaaattcttgtcttagatttgt 41



 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                    
Query: 11 tactccctccgtcccaaaattcttgtcttaggtttgtgtaga 52
          |||||||||| ||  |||||||||||||||| ||||| ||||
Sbjct: 97 tactccctccatcttaaaattcttgtcttagatttgtctaga 56




>RF00906;MIR1122;EF540321.1/52965-52831 4571:Triticum turgidum
          Length = 135

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 15  ccctccgtcccaaaattcttgtctta 40
           ||||||||||||||||||||||||||
Sbjct: 127 ccctccgtcccaaaattcttgtctta 102



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 14 tccctccgtcccaaaattcttgtctta 40
          ||||||| |||||||||||||||||||
Sbjct: 8  tccctccatcccaaaattcttgtctta 34




>RF00906;MIR1122;AY485644.1/84291-84425 4568:Triticum monococcum
          Length = 135

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 11 tactccctccgtcccaaaattcttgtctta 40
          ||||||||||||||||||||| ||||||||
Sbjct: 5  tactccctccgtcccaaaattgttgtctta 34



 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                 
Query: 14  tccctccgtcccaaaattcttgtcttaggtttgtgtagaaatgaatgtatctaa 67
           ||||||| |||||||||||||||||||  ||||| |||| | | ||||||||||
Sbjct: 128 tccctccatcccaaaattcttgtcttacatttgtttagatacggatgtatctaa 75




>RF00906;MIR1122;AY853252.1/217307-217173 4513:Hordeum vulgare
          Length = 135

 Score = 50.1 bits (25), Expect = 8e-06
 Identities = 68/81 (83%), Gaps = 1/81 (1%)
 Strand = Plus / Minus

                                                                       
Query: 11  tactccctccgtcccaaaattcttgtcttaggtttgtgtagaaatgaatgtatctaaata 70
           |||| |||||||||||||||||||||||  | ||| | |||| | | |||||||| || |
Sbjct: 131 tactacctccgtcccaaaattcttgtctaggatttatctagatacggatgtatct-aaca 73

                                
Query: 71  gcaaaacgtgactagatacat 91
             |||||||||||||||||||
Sbjct: 72  ctaaaacgtgactagatacat 52




>RF00906;MIR1122;AY235466.1/780-656 4565:Triticum aestivum (bread
           wheat)
          Length = 125

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 10  atactccctccgtcccaaaattcttgtc 37
           ||||||||||||||||||||| ||||||
Sbjct: 122 atactccctccgtcccaaaatacttgtc 95




>RF00906;MIR1122;AY235464.1/714-838 4565:Triticum aestivum (bread
          wheat)
          Length = 125

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 10 atactccctccgtcccaaaattcttgtc 37
          ||||||||||||||||||||| ||||||
Sbjct: 4  atactccctccgtcccaaaatacttgtc 31




>RF00906;MIR1122;AAAA02029963.1/5445-5312 39946:Oryza sativa Indica
           Group
          Length = 134

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 7   tttatactccctccgtcccaaaat 30
           ||||||||||||||||||||||||
Sbjct: 134 tttatactccctccgtcccaaaat 111




>RF00906;MIR1122;AP008216.1/16569819-16569686 39947:Oryza sativa
           Japonica Group
          Length = 134

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 7   tttatactccctccgtcccaaaat 30
           ||||||||||||||||||||||||
Sbjct: 134 tttatactccctccgtcccaaaat 111




>RF00906;MIR1122;AY491681.1/77211-77302 4568:Triticum monococcum
          Length = 92

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                 
Query: 8  ttatactccctccgtcccaaaat 30
          |||||||||||||||||||||||
Sbjct: 91 ttatactccctccgtcccaaaat 69




>RF00906;MIR1122;FJ184990.1/3303-3406 4565:Triticum aestivum
          (bread wheat)
          Length = 104

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 8  ttatactccctccgtcccaaaat 30
          |||||||||||||||||||||||
Sbjct: 2  ttatactccctccgtcccaaaat 24




>RF00906;MIR1122;AF488415.1/78603-78755 4568:Triticum monococcum
          Length = 153

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 8   ttatactccctccgtcccaaaat 30
           |||||||||||||||||||||||
Sbjct: 152 ttatactccctccgtcccaaaat 130




>RF00906;MIR1122;FJ491378.1/4581-4466 4550:Secale cereale (rye)
          Length = 116

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 8   ttatactccctccgtcccaaaat 30
           |||||||||||||||||||||||
Sbjct: 115 ttatactccctccgtcccaaaat 93




>RF00906;MIR1122;AF521177.1/81577-81474 4513:Hordeum vulgare
          Length = 104

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 8   ttatactccctccgtcccaaaat 30
           |||||||||||||||||||||||
Sbjct: 103 ttatactccctccgtcccaaaat 81




>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
          Length = 105

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 8  ttatactccctccgtcccaaaat 30
          |||||||||||||||||||||||
Sbjct: 2  ttatactccctccgtcccaaaat 24




>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
          Length = 105

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 8  ttatactccctccgtcccaaaat 30
          |||||||||||||||||||||||
Sbjct: 2  ttatactccctccgtcccaaaat 24




>RF00906;MIR1122;EU282251.1/1314-1209 52152:Elymus repens
          Length = 106

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 8   ttatactccctccgtcccaaaat 30
           |||||||||||||||||||||||
Sbjct: 105 ttatactccctccgtcccaaaat 83




>RF00906;MIR1122;AL831801.4/77594-77709 4530:Oryza sativa (rice)
          Length = 116

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 8  ttatactccctccgtcccaaaat 30
          |||||||||||||||||||||||
Sbjct: 2  ttatactccctccgtcccaaaat 24




>RF00906;MIR1122;AK288546.1/1340-1246 39947:Oryza sativa Japonica
          Group
          Length = 95

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                 
Query: 8  ttatactccctccgtcccaaaat 30
          |||||||||||||||||||||||
Sbjct: 94 ttatactccctccgtcccaaaat 72




>RF00906;MIR1122;AAAA02007660.1/3740-3838 39946:Oryza sativa
          Indica Group
          Length = 99

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 8  ttatactccctccgtcccaaaat 30
          |||||||||||||||||||||||
Sbjct: 2  ttatactccctccgtcccaaaat 24




>RF00906;MIR1122;U29095.1/333-439 4565:Triticum aestivum (bread
          wheat)
          Length = 107

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 9  tatactccctccgtcccaaaat 30
          ||||||||||||||||||||||
Sbjct: 3  tatactccctccgtcccaaaat 24




>RF00906;MIR1122;AJ400714.1/3663-3767 4565:Triticum aestivum (bread
           wheat)
          Length = 105

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 9   tatactccctccgtcccaaaat 30
           ||||||||||||||||||||||
Sbjct: 103 tatactccctccgtcccaaaat 82




>RF00906;MIR1122;DQ267106.1/62901-62968 4572:Triticum urartu
          Length = 68

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 9  tatactccctccgtcccaaaat 30
          ||||||||||||||||||||||
Sbjct: 3  tatactccctccgtcccaaaat 24




>RF00906;MIR1122;DQ175992.1/50-154 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 105

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 11  tactccctccgtcccaaaattcttgtctta 40
           ||||||||||||||||||||  ||||||||
Sbjct: 101 tactccctccgtcccaaaataattgtctta 72




>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 105

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 9   tatactccctccgtcccaaaat 30
           ||||||||||||||||||||||
Sbjct: 103 tatactccctccgtcccaaaat 82




>RF00906;MIR1122;AF525764.1/4346-4235 200361:Aegilops tauschii
           subsp. strangulata
          Length = 112

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 8   ttatactccctccgtcccaaaattcttgtc 37
           ||||||||||||||||| |||| |||||||
Sbjct: 111 ttatactccctccgtccgaaaaatcttgtc 82




>RF00906;MIR1122;EU730902.1/127235-127359 15368:Brachypodium
           distachyon
          Length = 125

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 9   tatactccctccgtcccaaaattcttgtct 38
           |||||||||||||| ||| |||||||||||
Sbjct: 123 tatactccctccgttccataattcttgtct 94




>RF00906;MIR1122;AAAA02007259.1/4313-4455 39946:Oryza sativa
          Indica Group
          Length = 143

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 9  tatactccctccgtcccaaaat 30
          ||||||||||||||||||||||
Sbjct: 3  tatactccctccgtcccaaaat 24




>RF00906;MIR1122;AAAA02003593.1/26423-26497 39946:Oryza sativa
          Indica Group
          Length = 75

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 9  tatactccctccgtcccaaaat 30
          ||||||||||||||||||||||
Sbjct: 73 tatactccctccgtcccaaaat 52




>RF00906;MIR1122;AAAA02000966.1/612-453 39946:Oryza sativa Indica
          Group
          Length = 160

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 9  tatactccctccgtcccaaaat 30
          ||||||||||||||||||||||
Sbjct: 3  tatactccctccgtcccaaaat 24




>RF00906;MIR1122;AC111016.2/25572-25452 39947:Oryza sativa Japonica
           Group
          Length = 121

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 9   tatactccctccgtcccaaaat 30
           ||||||||||||||||||||||
Sbjct: 119 tatactccctccgtcccaaaat 98




>RF00906;MIR1122;AP004047.3/87830-87972 39947:Oryza sativa
          Japonica Group
          Length = 143

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 9  tatactccctccgtcccaaaat 30
          ||||||||||||||||||||||
Sbjct: 3  tatactccctccgtcccaaaat 24




>RF00906;MIR1122;AC232160.1/3827-3951 63629:Oryza minuta
          Length = 125

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 9  tatactccctccgtcccaaaat 30
          ||||||||||||||||||||||
Sbjct: 3  tatactccctccgtcccaaaat 24




>RF00906;MIR1122;AC226266.1/92361-92224 63629:Oryza minuta
          Length = 138

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 9   tatactccctccgtcccaaaat 30
           ||||||||||||||||||||||
Sbjct: 136 tatactccctccgtcccaaaat 115




>RF00906;MIR1122;AP008218.1/2340117-2339983 39947:Oryza sativa
          Japonica Group
          Length = 135

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 9  tatactccctccgtcccaaaat 30
          ||||||||||||||||||||||
Sbjct: 3  tatactccctccgtcccaaaat 24




>RF00906;MIR1122;AC210491.1/95749-95858 4538:Oryza glaberrima
           (African rice)
          Length = 110

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 9   tatactccctccgtcccaaaat 30
           ||||||||||||||||||||||
Sbjct: 108 tatactccctccgtcccaaaat 87




>RF00906;MIR1122;AAAA02017235.1/6057-5946 39946:Oryza sativa
          Indica Group
          Length = 112

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 9  tatactccctccgtcccaaaat 30
          ||||||||||||||||||||||
Sbjct: 3  tatactccctccgtcccaaaat 24




>RF00906;MIR1122;AC137999.2/12932-12822 39947:Oryza sativa
          Japonica Group
          Length = 111

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 9  tatactccctccgtcccaaaat 30
          ||||||||||||||||||||||
Sbjct: 3  tatactccctccgtcccaaaat 24




>RF00906;MIR1122;AP008208.1/1166338-1166449 39947:Oryza sativa
           Japonica Group
          Length = 112

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 9   tatactccctccgtcccaaaat 30
           ||||||||||||||||||||||
Sbjct: 110 tatactccctccgtcccaaaat 89




>RF00906;MIR1122;AACV01023551.1/12075-12186 39947:Oryza sativa
          Japonica Group
          Length = 112

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 9  tatactccctccgtcccaaaat 30
          ||||||||||||||||||||||
Sbjct: 3  tatactccctccgtcccaaaat 24




>RF00906;MIR1122;AP003760.4/5605-5476 39947:Oryza sativa Japonica
           Group
          Length = 130

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 9   tatactccctccgtcccaaaat 30
           ||||||||||||||||||||||
Sbjct: 128 tatactccctccgtcccaaaat 107




>RF00906;MIR1122;AAAA02004295.1/15025-15180 39946:Oryza sativa
           Indica Group
          Length = 156

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 9   tatactccctccgtcccaaaat 30
           ||||||||||||||||||||||
Sbjct: 154 tatactccctccgtcccaaaat 133




>RF00906;MIR1122;AAAA02006274.1/23456-23551 39946:Oryza sativa
          Indica Group
          Length = 96

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 9  tatactccctccgtcccaaaat 30
          ||||||||||||||||||||||
Sbjct: 94 tatactccctccgtcccaaaat 73




>RF00906;MIR1122;AP008215.1/19940245-19940356 39947:Oryza sativa
           Japonica Group
          Length = 112

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 9   tatactccctccgtcccaaaat 30
           ||||||||||||||||||||||
Sbjct: 110 tatactccctccgtcccaaaat 89




>RF00906;MIR1122;AL831796.5/20323-20408 4530:Oryza sativa (rice)
          Length = 86

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 9  tatactccctccgtcccaaaat 30
          ||||||||||||||||||||||
Sbjct: 84 tatactccctccgtcccaaaat 63




>RF00906;MIR1122;AP003381.3/77030-76947 39947:Oryza sativa
          Japonica Group
          Length = 84

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 9  tatactccctccgtcccaaaat 30
          ||||||||||||||||||||||
Sbjct: 3  tatactccctccgtcccaaaat 24




>RF00906;MIR1122;AC093953.2/44822-44955 39947:Oryza sativa Japonica
           Group
          Length = 134

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 9   tatactccctccgtcccaaaat 30
           ||||||||||||||||||||||
Sbjct: 132 tatactccctccgtcccaaaat 111




>RF00906;MIR1122;AK288180.1/1387-1262 39947:Oryza sativa Japonica
           Group
          Length = 126

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 9   tatactccctccgtcccaaaat 30
           ||||||||||||||||||||||
Sbjct: 124 tatactccctccgtcccaaaat 103