miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AACV01018440.1/8398-8301 39947:Oryza sativa
Japonica Group
Length = 98
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 16 ttactccctccgtcccaaaatgtaa 40
|||||||||||||||||||||||||
Sbjct: 95 ttactccctccgtcccaaaatgtaa 71
>RF00906;MIR1122;AC161407.5/87285-87421 3880:Medicago truncatula
(barrel medic)
Length = 137
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 17 tactccctccgtcccaaaatgtaa 40
||||||||||||||||||||||||
Sbjct: 133 tactccctccgtcccaaaatgtaa 110
>RF00906;MIR1122;CR954190.2/110040-110176 3880:Medicago truncatula
(barrel medic)
Length = 137
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 tactccctccgtcccaaaatgtaa 40
||||||||||||||||||||||||
Sbjct: 5 tactccctccgtcccaaaatgtaa 28
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 17 tactccctccgtcccaaaatgtaa 40
||||||||||||||||||||||||
Sbjct: 133 tactccctccgtcccaaaatgtaa 110
>RF00906;MIR1122;AAAA02033663.1/22175-22286 39946:Oryza sativa
Indica Group
Length = 112
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 tactccctccgtcccaaaatgtaa 40
||||||||||||||||||||||||
Sbjct: 5 tactccctccgtcccaaaatgtaa 28
>RF00906;MIR1122;AAAA02025080.1/2043-2177 39946:Oryza sativa
Indica Group
Length = 135
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 16 ttactccctccgtcccaaaatgtaaaaa 43
||||||||||||||||||||| ||||||
Sbjct: 4 ttactccctccgtcccaaaatataaaaa 31
>RF00906;MIR1122;AP008215.1/20036672-20036557 39947:Oryza sativa
Japonica Group
Length = 116
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 tactccctccgtcccaaaatgtaa 40
||||||||||||||||||||||||
Sbjct: 5 tactccctccgtcccaaaatgtaa 28
>RF00906;MIR1122;AP003913.3/29133-29264 39947:Oryza sativa
Japonica Group
Length = 132
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 16 ttactccctccgtcccaaaatgtaaaaa 43
||||||||||||||||||||| ||||||
Sbjct: 4 ttactccctccgtcccaaaatataaaaa 31
>RF00906;MIR1122;AP005510.3/22168-22263 39947:Oryza sativa
Japonica Group
Length = 96
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 tactccctccgtcccaaaatgtaa 40
||||||||||||||||||||||||
Sbjct: 5 tactccctccgtcccaaaatgtaa 28
>RF00906;MIR1122;AP005399.3/486-590 39947:Oryza sativa Japonica
Group
Length = 105
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 17 tactccctccgtcccaaaatgtaa 40
||||||||||||||||||||||||
Sbjct: 101 tactccctccgtcccaaaatgtaa 78
>RF00906;MIR1122;AL662938.3/6940-7051 39947:Oryza sativa Japonica
Group
Length = 112
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 tactccctccgtcccaaaatgtaa 40
||||||||||||||||||||||||
Sbjct: 5 tactccctccgtcccaaaatgtaa 28
>RF00906;MIR1122;AP005676.3/140751-140855 39947:Oryza sativa
Japonica Group
Length = 105
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 17 tactccctccgtcccaaaatgtaa 40
||||||||||||||||||||||||
Sbjct: 101 tactccctccgtcccaaaatgtaa 78
>RF00906;MIR1122;AACV01018660.1/8916-9023 39947:Oryza sativa
Japonica Group
Length = 108
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 tactccctccgtcccaaaatgtaa 40
||||||||||||||||||||||||
Sbjct: 5 tactccctccgtcccaaaatgtaa 28
>RF00906;MIR1122;AAAA02006222.1/38105-37993 39946:Oryza sativa
Indica Group
Length = 113
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 13 tacttactccctccgtcccaaaat 36
||||||||||||||||||||||||
Sbjct: 1 tacttactccctccgtcccaaaat 24
>RF01058;MIR806;AC232167.1/58295-58055 63629:Oryza minuta
Length = 241
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tactccctccgtcccaaaatgta 39
|||||||||||||||||||||||
Sbjct: 2 tactccctccgtcccaaaatgta 24
>RF01058;MIR806;AAAA02017199.1/23024-23263 39946:Oryza sativa
Indica Group
Length = 240
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tactccctccgtcccaaaatgta 39
|||||||||||||||||||||||
Sbjct: 2 tactccctccgtcccaaaatgta 24
>RF00906;MIR1122;EU660903.1/8169-8251 4565:Triticum aestivum
(bread wheat)
Length = 83
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 41 aaaacgtcttacattttagacggagggagta 71
||||||||||||||| | |||||||||||||
Sbjct: 49 aaaacgtcttacattatggacggagggagta 79
>RF00906;MIR1122;AACV01014487.1/12034-11914 39947:Oryza sativa
Japonica Group
Length = 121
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 13 tacttactccctccgtcccaaaatgta 39
|||||||| ||||||||||||||||||
Sbjct: 121 tacttacttcctccgtcccaaaatgta 95
>RF00906;MIR1122;AL831801.4/77594-77709 4530:Oryza sativa (rice)
Length = 116
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tactccctccgtcccaaaatgta 39
|||||||||||||||||||||||
Sbjct: 5 tactccctccgtcccaaaatgta 27
>RF00906;MIR1122;AACV01009606.1/13757-13637 39947:Oryza sativa
Japonica Group
Length = 121
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 acttactccctccgtcccaaaat 36
|||||||||||||||||||||||
Sbjct: 2 acttactccctccgtcccaaaat 24
>RF00906;MIR1122;CR855143.1/66136-66012 4530:Oryza sativa (rice)
Length = 125
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 16 ttactccctccgtcccaaaatgtaaaa 42
||||||||||||||||||||| |||||
Sbjct: 122 ttactccctccgtcccaaaatataaaa 96
>RF00906;MIR1122;CT827956.1/52813-52688 4530:Oryza sativa (rice)
Length = 126
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 17 tactccctccgtcccaaaatgtaaaaa 43
|||||||||||||||||||| ||||||
Sbjct: 122 tactccctccgtcccaaaatataaaaa 96
>RF00906;MIR1122;AAAA02011966.1/4807-4962 39946:Oryza sativa Indica
Group
Length = 156
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 17 tactccctccgtcccaaaatgtaaaaa 43
|||||||||||||||||||| ||||||
Sbjct: 152 tactccctccgtcccaaaatataaaaa 126
>RF00906;MIR1122;AL606691.4/2041-1917 39947:Oryza sativa Japonica
Group
Length = 125
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 16 ttactccctccgtcccaaaatgtaaaa 42
||||||||||||||||||||| |||||
Sbjct: 122 ttactccctccgtcccaaaatataaaa 96
>RF01058;MIR806;AAAA02026783.1/9702-9457 39946:Oryza sativa Indica
Group
Length = 246
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tactccctccgtcccaaaatgt 38
||||||||||||||||||||||
Sbjct: 2 tactccctccgtcccaaaatgt 23
>RF01058;MIR806;AACV01014787.1/638-878 39947:Oryza sativa Japonica
Group
Length = 241
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 17 tactccctccgtcccaaaatgt 38
||||||||||||||||||||||
Sbjct: 240 tactccctccgtcccaaaatgt 219
>RF00906;MIR1122;AC127019.29/109198-109062 3880:Medicago
truncatula (barrel medic)
Length = 137
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 ctccctccgtcccaaaatgtaa 40
||||||||||||||||||||||
Sbjct: 7 ctccctccgtcccaaaatgtaa 28
>RF00906;MIR1122;AK252392.1/1279-1175 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 15 cttactccctccgtcccaaaat 36
||||||||||||||||||||||
Sbjct: 103 cttactccctccgtcccaaaat 82
>RF00906;MIR1122;AAAA02028442.1/1248-1113 39946:Oryza sativa Indica
Group
Length = 136
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 15 cttactccctccgtcccaaaat 36
||||||||||||||||||||||
Sbjct: 134 cttactccctccgtcccaaaat 113
>RF00906;MIR1122;AP008210.1/31519155-31519262 39947:Oryza sativa
Japonica Group
Length = 108
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 15 cttactccctccgtcccaaaat 36
||||||||||||||||||||||
Sbjct: 106 cttactccctccgtcccaaaat 85
>RF00906;MIR1122;AP008213.1/5269757-5269875 39947:Oryza sativa
Japonica Group
Length = 119
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 14 acttactccctccgtcccaaaa 35
||||||||||||||||||||||
Sbjct: 118 acttactccctccgtcccaaaa 97
>RF00906;MIR1122;AACV01020861.1/25006-25108 39947:Oryza sativa
Japonica Group
Length = 103
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 15 cttactccctccgtcccaaaat 36
||||||||||||||||||||||
Sbjct: 101 cttactccctccgtcccaaaat 80
>RF00906;MIR1122;AAAA02021241.1/19496-19614 39946:Oryza sativa
Indica Group
Length = 119
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 14 acttactccctccgtcccaaaa 35
||||||||||||||||||||||
Sbjct: 118 acttactccctccgtcccaaaa 97
>RF00906;MIR1122;AP008208.1/1673372-1673471 39947:Oryza sativa
Japonica Group
Length = 100
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 15 cttactccctccgtcccaaaat 36
||||||||||||||||||||||
Sbjct: 98 cttactccctccgtcccaaaat 77
>RF00906;MIR1122;CR855160.1/7113-7006 4530:Oryza sativa (rice)
Length = 108
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 cttactccctccgtcccaaaat 36
||||||||||||||||||||||
Sbjct: 3 cttactccctccgtcccaaaat 24
