miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AK252095.1/1820-1925 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 106
Score = 210 bits (106), Expect = 3e-54
Identities = 106/106 (100%)
Strand = Plus / Minus
Query: 13 ggcatactccctctgtcccaaaataagtgtcacaaatttataactaaattagtacaaatt 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 ggcatactccctctgtcccaaaataagtgtcacaaatttataactaaattagtacaaatt 47
Query: 73 ttatactaaatcagcgacacttattttgatacggagggagtacaaa 118
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46 ttatactaaatcagcgacacttattttgatacggagggagtacaaa 1
>RF00906;MIR1122;EU282656.1/645-750 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 106
Score = 119 bits (60), Expect = 9e-27
Identities = 87/96 (90%)
Strand = Plus / Minus
Query: 17 tactccctctgtcccaaaataagtgtcacaaatttataactaaattagtacaaattttat 76
||||||||| ||||||||||||||||| ||||||||||| ||| |||||||||||||||
Sbjct: 102 tactccctcggtcccaaaataagtgtcgtaaatttataaccaaactagtacaaattttat 43
Query: 77 actaaatcagcgacacttattttgatacggagggag 112
||||||| |||||||| ||||||| ||||||||||
Sbjct: 42 actaaatgggcgacactcattttgagacggagggag 7
>RF00906;MIR1122;EU282251.1/1314-1209 52152:Elymus repens
Length = 106
Score = 107 bits (54), Expect = 4e-23
Identities = 87/98 (88%)
Strand = Plus / Plus
Query: 17 tactccctctgtcccaaaataagtgtcacaaatttataactaaattagtacaaattttat 76
||||||||| ||||||||||||||||| |||||||| ||||| ||||||||||| | ||
Sbjct: 5 tactccctccgtcccaaaataagtgtcgcaaatttagtactaagttagtacaaatataat 64
Query: 77 actaaatcagcgacacttattttgatacggagggagta 114
|||| | ||||||||||||||||| ||||||||||||
Sbjct: 65 actagagcagcgacacttattttgggacggagggagta 102
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 16 atactccctctgtcccaaaataagtgtc 43
|||||||||| |||||||||||||||||
Sbjct: 103 atactccctccgtcccaaaataagtgtc 76
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 76 tactaaatcagcgacacttattttgatacggagggagta 114
|||||||| ||||||||||||||| ||||||||||||
Sbjct: 43 tactaaatttgcgacacttattttgggacggagggagta 5
>RF00906;MIR1122;AK249769.1/2180-2285 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 106
Score = 81.8 bits (41), Expect = 2e-15
Identities = 74/85 (87%)
Strand = Plus / Plus
Query: 16 atactccctctgtcccaaaataagtgtcacaaatttataactaaattagtacaaatttta 75
|||||||||| ||| ||||||||||||||||||||| | ||| |||||| ||||||
Sbjct: 4 atactccctccgtcttaaaataagtgtcacaaatttagtattaagttagtataaatttag 63
Query: 76 tactaaatcagcgacacttattttg 100
||||||| |||||||||||||||||
Sbjct: 64 tactaaaacagcgacacttattttg 88
Score = 48.1 bits (24), Expect = 3e-05
Identities = 72/88 (81%)
Strand = Plus / Minus
Query: 27 gtcccaaaataagtgtcacaaatttataactaaattagtacaaattttatactaaatcag 86
||||||||||||||||| | |||| |||||||| ||| || || ||||||||| |
Sbjct: 92 gtcccaaaataagtgtcgctgttttagtactaaatttatactaacttaatactaaatttg 33
Query: 87 cgacacttattttgatacggagggagta 114
|||||||||||| | ||||||||||||
Sbjct: 32 tgacacttattttaagacggagggagta 5
>RF00906;MIR1122;DQ900687.1/24296-24401 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 106
Score = 63.9 bits (32), Expect = 5e-10
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 55 actaaattagtacaaattttatactaaatcagcgacacttattttgatacggagggagta 114
||||||| |||||||||||| ||||| |||| ||||||||||||| ||||||||||||
Sbjct: 43 actaaatgagtacaaattttgtactagatcaacgacacttattttaggacggagggagta 102
>RF00906;MIR1122;EF560592.1/17009-17118 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 110
Score = 60.0 bits (30), Expect = 8e-09
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 73 ttatactaaatcagcgacacttattttgatacggagggagta 114
|||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 46 ttatactaaatcagcgacacttattttggaacggaaggagta 5
Score = 54.0 bits (27), Expect = 5e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 76 tactaaatcagcgacacttattttgatacggagggagta 114
||||||||||||||||||||||||| ||||||| ||||
Sbjct: 68 tactaaatcagcgacacttattttgggacggaggtagta 106
>RF00906;MIR1122;FJ491378.1/3751-3855 4550:Secale cereale (rye)
Length = 105
Score = 56.0 bits (28), Expect = 1e-07
Identities = 83/100 (83%), Gaps = 1/100 (1%)
Strand = Plus / Plus
Query: 15 catactccctctgtcccaaaataagtgtcacaaatttataactaaattagtacaaatttt 74
|||| |||||| |||||||||||||||||| ||||| || || |||||| ||| ||
Sbjct: 3 catattccctccgtcccaaaataagtgtcattgatttagtacaaagttagtataaagttg 62
Query: 75 atactaaatcagcgacacttattttgatacggagggagta 114
|| |||||||||||||||||||||| |||| |||||||
Sbjct: 63 -tattaaatcagcgacacttattttgggacggcgggagta 101
>RF00906;MIR1122;D30809.1/4836-4921 4565:Triticum aestivum (bread
wheat)
Length = 86
Score = 54.0 bits (27), Expect = 5e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 76 tactaaatcagcgacacttattttgatacggagggagta 114
||||||||||||||||||||||||| |||| |||||||
Sbjct: 44 tactaaatcagcgacacttattttgggacggtgggagta 82
>RF00906;MIR1122;FJ491378.1/4581-4466 4550:Secale cereale (rye)
Length = 116
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 16 atactccctctgtcccaaaataagtg 41
||||||||||||||||||||||||||
Sbjct: 4 atactccctctgtcccaaaataagtg 29
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 16 atactccctctgtcccaaaataagtg 41
|||||||||| |||||||||||||||
Sbjct: 113 atactccctccgtcccaaaataagtg 88
>RF00906;MIR1122;FJ477093.1/40908-41001 4513:Hordeum vulgare
Length = 94
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 16 atactccctctgtcccaaaataagtg 41
||||||||||||||||||||||||||
Sbjct: 4 atactccctctgtcccaaaataagtg 29
>RF00906;MIR1122;DQ267106.1/62901-62968 4572:Triticum urartu
Length = 68
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 17 tactccctctgtcccaaaataagtg 41
|||||||||||||||||||||||||
Sbjct: 64 tactccctctgtcccaaaataagtg 40
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 atactccctctgtcccaaaataagtg 41
|||||||||| |||||||||||||||
Sbjct: 4 atactccctccgtcccaaaataagtg 29
>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
Length = 105
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 88 gacacttattttgatacggagggagtaca 116
|||||||||||||| ||||||||||||||
Sbjct: 31 gacacttattttgagacggagggagtaca 3
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 17 tactccctctgtcccaaaataagtgtc 43
||||||||| |||||||||||||||||
Sbjct: 101 tactccctccgtcccaaaataagtgtc 75
>RF00906;MIR1122;ABXC01004408.1/208298-208202 4558:Sorghum bicolor
(sorghum)
Length = 97
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 17 tactccctctgtcccaaaataagtgtca 44
|||||||||||||||||||| |||||||
Sbjct: 5 tactccctctgtcccaaaatgagtgtca 32
>RF00906;MIR1122;AJ400714.1/3663-3767 4565:Triticum aestivum (bread
wheat)
Length = 105
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 16 atactccctctgtcccaaaataagtgtc 43
|||||||||| |||||||||||||||||
Sbjct: 102 atactccctccgtcccaaaataagtgtc 75
>RF00906;MIR1122;FJ184990.1/3303-3406 4565:Triticum aestivum
(bread wheat)
Length = 104
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 16 atactccctctgtcccaaaataagtgtc 43
|||||||||| |||||||||||||||||
Sbjct: 4 atactccctccgtcccaaaataagtgtc 31
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 16 atactccctctgtcccaaaataagtgtc 43
|||||||||| |||||||||||||||||
Sbjct: 101 atactccctccgtcccaaaataagtgtc 74
>RF00906;MIR1122;DQ871219.1/106890-106994 85692:Triticum turgidum
subsp. dicoccoides
Length = 105
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 16 atactccctctgtcccaaaataagtgtc 43
|||||||||| |||||||||||||||||
Sbjct: 4 atactccctccgtcccaaaataagtgtc 31
>RF00906;MIR1122;DQ445236.1/13423-13319 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 16 atactccctctgtcccaaaataagtgtcacaaattt 51
|||||||||| || |||||||||||||| |||||||
Sbjct: 4 atactccctccgttccaaaataagtgtctcaaattt 39
>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 16 atactccctctgtcccaaaataagtgtc 43
|||||||||| |||||||||||||||||
Sbjct: 102 atactccctccgtcccaaaataagtgtc 75
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 17 tactccctctgtcccaaaataagtgtc 43
||||||||| |||||||||||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgtc 31
>RF00906;MIR1122;AJ234485.1/114-218 4513:Hordeum vulgare
Length = 105
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 88 gacacttattttgatacggagggagtac 115
|||||||||||||| |||||||||||||
Sbjct: 31 gacacttattttgagacggagggagtac 4
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 16 atactccctctgtcccaaaataagtgtc 43
|||||||||| |||||||||||||||||
Sbjct: 4 atactccctccgtcccaaaataagtgtc 31
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 16 atactccctctgtcccaaaataagtgtc 43
|||||||||| |||||||||||||||||
Sbjct: 4 atactccctccgtcccaaaataagtgtc 31
>RF00906;MIR1122;AAAA02021906.1/16695-16573 39946:Oryza sativa
Indica Group
Length = 123
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 15 catactccctctgtcccaaaataa 38
||||||||||||||||||||||||
Sbjct: 121 catactccctctgtcccaaaataa 98
>RF00906;MIR1122;AK249560.1/988-1092 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 16 atactccctctgtcccaaaataagtgtcacaaatttata 54
||||||| || ||||||||||||||||| ||| ||||||
Sbjct: 4 atactccatccgtcccaaaataagtgtctcaactttata 42
>RF00906;MIR1122;DQ445238.1/5626-5730 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 16 atactccctctgtcccaaaataagtgtcacaaatttata 54
|||||||||| |||||||||||| |||| ||| ||||||
Sbjct: 102 atactccctccgtcccaaaataactgtctcaactttata 64
>RF00906;MIR1122;AK250735.1/291-376 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 86
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 17 tactccctctgtcccaaaataagtgtc 43
||||||||| |||||||||||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgtc 31
>RF00906;MIR1122;EU593539.1/914-1018 4513:Hordeum vulgare
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 16 atactccctctgtcccaaaataagtgtcacaaatttata 54
|||||||||| |||||||||||| |||| ||| ||||||
Sbjct: 102 atactccctccgtcccaaaataactgtctcaactttata 64
>RF00906;MIR1122;AY821694.1/1308-1197 37674:Crithopsis delileana
Length = 112
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 17 tactccctctgtcccaaaataagtgtc 43
||||||||| |||||||||||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgtc 31
>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
Length = 132
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 15 catactccctctgtcccaaaataagtg 41
||||||||||| |||||||||||||||
Sbjct: 3 catactccctccgtcccaaaataagtg 29
>RF00906;MIR1122;AP008214.1/14410723-14410632 39947:Oryza sativa
Japonica Group
Length = 92
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 15 catactccctctgtcccaaaataagtg 41
||||||||||| |||||||||||||||
Sbjct: 3 catactccctccgtcccaaaataagtg 29
>RF00906;MIR1122;AACV01015822.1/5399-5292 39947:Oryza sativa
Japonica Group
Length = 108
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 catactccctctgtcccaaaata 37
|||||||||||||||||||||||
Sbjct: 3 catactccctctgtcccaaaata 25
>RF01058;MIR806;AP008208.1/6823788-6823544 39947:Oryza sativa
Japonica Group
Length = 245
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 16 atactccctctgtcccaaaataagtg 41
|||||||||| |||||||||||||||
Sbjct: 245 atactccctccgtcccaaaataagtg 220
>RF01058;MIR806;AL731615.4/103346-103100 39947:Oryza sativa
Japonica Group
Length = 247
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 17 tactccctctgtcccaaaataagtgt 42
||||||||| ||||||||||||||||
Sbjct: 2 tactccctccgtcccaaaataagtgt 27
>RF01058;MIR806;AACV01008707.1/8338-8098 39947:Oryza sativa
Japonica Group
Length = 241
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 16 atactccctctgtcccaaaata 37
||||||||||||||||||||||
Sbjct: 1 atactccctctgtcccaaaata 22
>RF01058;MIR806;AACV01025022.1/35011-35254 39947:Oryza sativa
Japonica Group
Length = 244
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 atactccctctgtcccaaaataagtg 41
|||||||||| |||||||||||||||
Sbjct: 1 atactccctccgtcccaaaataagtg 26
>RF01058;MIR806;AC136971.3/14967-14725 39947:Oryza sativa Japonica
Group
Length = 243
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 16 atactccctctgtcccaaaata 37
||||||||||||||||||||||
Sbjct: 243 atactccctctgtcccaaaata 222
>RF01058;MIR806;AAAA02004537.1/25464-25706 39946:Oryza sativa
Indica Group
Length = 243
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 atactccctctgtcccaaaataagtg 41
|||||||||| |||||||||||||||
Sbjct: 1 atactccctccgtcccaaaataagtg 26
>RF01058;MIR806;AAAA02009876.1/3121-2881 39946:Oryza sativa Indica
Group
Length = 241
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 16 atactccctctgtcccaaaataagtg 41
|||||||||| |||||||||||||||
Sbjct: 241 atactccctccgtcccaaaataagtg 216
>RF00906;MIR1122;U29095.1/333-439 4565:Triticum aestivum (bread
wheat)
Length = 107
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 atactccctctgtcccaaaataagtg 41
|||||||||| |||||||||||||||
Sbjct: 4 atactccctccgtcccaaaataagtg 29
>RF00906;MIR1122;AB183299.1/312-404 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 19 ctccctctgtcccaaaataagtgtcacaaattta 52
||||||| ||||||||||||||||| ||| ||||
Sbjct: 7 ctccctccgtcccaaaataagtgtctcaacttta 40
>RF00906;MIR1122;AJ507395.1/7785-7899 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 115
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 tccctctgtcccaaaataagtg 41
||||||||||||||||||||||
Sbjct: 8 tccctctgtcccaaaataagtg 29
>RF00906;MIR1122;AF521177.1/81577-81474 4513:Hordeum vulgare
Length = 104
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 16 atactccctctgtcccaaaataagtg 41
|||||||||| |||||||||||||||
Sbjct: 101 atactccctccgtcccaaaataagtg 76
>RF00906;MIR1122;AACV01004030.1/351-512 39947:Oryza sativa
Japonica Group
Length = 162
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 16 atactccctctgtcccaaaata 37
||||||||||||||||||||||
Sbjct: 4 atactccctctgtcccaaaata 25
>RF00906;MIR1122;AP004621.3/94317-94428 39947:Oryza sativa
Japonica Group
Length = 112
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 catactccctctgtcccaaaat 36
||||||||||||||||||||||
Sbjct: 3 catactccctctgtcccaaaat 24
>RF00906;MIR1122;AP008212.1/3593579-3593709 39947:Oryza sativa
Japonica Group
Length = 131
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 16 atactccctctgtcccaaaata 37
||||||||||||||||||||||
Sbjct: 128 atactccctctgtcccaaaata 107
>RF00906;MIR1122;AACV01009606.1/13757-13637 39947:Oryza sativa
Japonica Group
Length = 121
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 17 tactccctctgtcccaaaataa 38
||||||||||||||||||||||
Sbjct: 117 tactccctctgtcccaaaataa 96
>RF00906;MIR1122;AAAA02008325.1/22579-22685 39946:Oryza sativa
Indica Group
Length = 107
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 atactccctctgtcccaaaataagtg 41
|||||||||||||||||| |||||||
Sbjct: 4 atactccctctgtcccaatataagtg 29
>RF00906;MIR1122;AACV01001981.1/7100-7193 39947:Oryza sativa
Japonica Group
Length = 94
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 13 ggcatactccctctgtcccaaaataa 38
||||||||||||| ||||||||||||
Sbjct: 1 ggcatactccctccgtcccaaaataa 26
