miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AK249560.1/988-1092 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 105

 Score =  135 bits (68), Expect = 2e-31
 Identities = 92/100 (92%)
 Strand = Plus / Plus

                                                                       
Query: 15  gatactccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaatttg 74
           |||||||| || |||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 3   gatactccatccgtcccaaaataagtgtctcaactttatactagctatagtacaaacttg 62

                                                   
Query: 75  tactaagcttgagacagttattttgggacagaggaagtac 114
           || |||| ||||||||||||||||||||| |||| |||||
Sbjct: 63  tattaagtttgagacagttattttgggacggagggagtac 102



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 17  tactccctctgtcccaaaataagtgtctcaa 47
           ||||||||| |||||||||||| ||||||||
Sbjct: 101 tactccctccgtcccaaaataactgtctcaa 71




>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 105

 Score =  123 bits (62), Expect = 6e-28
 Identities = 89/98 (90%)
 Strand = Plus / Minus

                                                                       
Query: 16  atactccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaatttgt 75
           |||||||||| ||||||||||||||||||||||||| |||||||| ||||||||| ||  
Sbjct: 102 atactccctccgtcccaaaataagtgtctcaactttgtactagctgtagtacaaaattac 43

                                                 
Query: 76  actaagcttgagacagttattttgggacagaggaagta 113
           ||||||||||||||| |||||||||||| |||| ||||
Sbjct: 42  actaagcttgagacacttattttgggacggagggagta 5



 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 17 tactccctctgtcccaaaataagtgtctcaa 47
          ||||||||| |||||||||||||||||||||
Sbjct: 5  tactccctccgtcccaaaataagtgtctcaa 35




>RF00906;MIR1122;EU593539.1/914-1018 4513:Hordeum vulgare
          Length = 105

 Score =  123 bits (62), Expect = 6e-28
 Identities = 89/98 (90%)
 Strand = Plus / Minus

                                                                       
Query: 16  atactccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaatttgt 75
           |||||||||| |||||||||||| ||||||||||||||||||| | ||||| |||||| |
Sbjct: 102 atactccctccgtcccaaaataactgtctcaactttatactagatctagtataaatttat 43

                                                 
Query: 76  actaagcttgagacagttattttgggacagaggaagta 113
           ||||||||| |||||||||||||||||| |||| ||||
Sbjct: 42  actaagcttaagacagttattttgggacggagggagta 5



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 83  ttgagacagttattttgggacagaggaagta 113
           ||||||||||||||||||||| |||| ||||
Sbjct: 71  ttgagacagttattttgggacggagggagta 101




>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
          Length = 105

 Score =  121 bits (61), Expect = 2e-27
 Identities = 88/97 (90%)
 Strand = Plus / Minus

                                                                       
Query: 17  tactccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaatttgta 76
           ||||||||| |||||||||||| |||||||||||| || || |||||||||||| |||||
Sbjct: 101 tactccctccgtcccaaaataaatgtctcaactttgtattaactttagtacaaagttgta 42

                                                
Query: 77  ctaagcttgagacagttattttgggacagaggaagta 113
           |||||||||||||| |||||||||||| |||| ||||
Sbjct: 41  ctaagcttgagacacttattttgggacggagggagta 5



 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 16 atactccctctgtcccaaaataagtgtctcaa 47
          |||||||||| |||||||||||||||||||||
Sbjct: 4  atactccctccgtcccaaaataagtgtctcaa 35




>RF00906;MIR1122;X83518.1/7301-7197 4513:Hordeum vulgare
          Length = 105

 Score =  119 bits (60), Expect = 9e-27
 Identities = 78/84 (92%)
 Strand = Plus / Minus

                                                                       
Query: 16  atactccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaatttgt 75
           ||||||||||| | |||||||||||||||||||||| |||||||| || |||||| ||||
Sbjct: 102 atactccctctcttccaaaataagtgtctcaactttgtactagctctactacaaagttgt 43

                                   
Query: 76  actaagcttgagacagttattttg 99
           ||||||||||||||||||||||||
Sbjct: 42  actaagcttgagacagttattttg 19




>RF00906;MIR1122;DQ445238.1/5626-5730 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 105

 Score =  115 bits (58), Expect = 1e-25
 Identities = 88/98 (89%)
 Strand = Plus / Minus

                                                                       
Query: 16  atactccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaatttgt 75
           |||||||||| |||||||||||| ||||||||||||||||||| | || || |||||| |
Sbjct: 102 atactccctccgtcccaaaataactgtctcaactttatactagatctaatataaatttat 43

                                                 
Query: 76  actaagcttgagacagttattttgggacagaggaagta 113
           ||||||||| |||||||||||||||||| |||| ||||
Sbjct: 42  actaagcttaagacagttattttgggacggagggagta 5



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 83  ttgagacagttattttgggacagaggaagta 113
           ||||||||||||||||||||| |||| ||||
Sbjct: 71  ttgagacagttattttgggacggagggagta 101




>RF00906;MIR1122;DQ445236.1/13423-13319 112509:Hordeum vulgare
           subsp. vulgare (domesticated barley)
          Length = 105

 Score =  115 bits (58), Expect = 1e-25
 Identities = 88/98 (89%)
 Strand = Plus / Plus

                                                                       
Query: 16  atactccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaatttgt 75
           |||||||||| || |||||||||||||||||| ||| |||||||| ||||||||| ||||
Sbjct: 4   atactccctccgttccaaaataagtgtctcaaatttgtactagctctagtacaaagttgt 63

                                                 
Query: 76  actaagcttgagacagttattttgggacagaggaagta 113
           ||||||||||||| ||||||||||| || |||| ||||
Sbjct: 64  actaagcttgagatagttattttggaacggagggagta 101




>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
          Length = 105

 Score =  115 bits (58), Expect = 1e-25
 Identities = 88/98 (89%)
 Strand = Plus / Minus

                                                                       
Query: 17  tactccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaatttgta 76
           ||||||||| |||||||||||||||||| |||||| ||||| |||||||||||| |||||
Sbjct: 101 tactccctccgtcccaaaataagtgtcttaactttgtactaactttagtacaaagttgta 42

                                                 
Query: 77  ctaagcttgagacagttattttgggacagaggaagtac 114
           ||| |||||||||| |||||||| ||| |||| |||||
Sbjct: 41  ctaggcttgagacacttattttgagacggagggagtac 4



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 17 tactccctctgtcccaaaataagtgtctcaa 47
          ||||||||| ||| |||||||||||||||||
Sbjct: 5  tactccctccgtctcaaaataagtgtctcaa 35




>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
          Length = 105

 Score =  113 bits (57), Expect = 6e-25
 Identities = 87/97 (89%)
 Strand = Plus / Minus

                                                                       
Query: 17  tactccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaatttgta 76
           ||||||||| |||||||||||| |||||||||||| || || |||||||||||  |||||
Sbjct: 101 tactccctccgtcccaaaataaatgtctcaactttgtattaactttagtacaaggttgta 42

                                                
Query: 77  ctaagcttgagacagttattttgggacagaggaagta 113
           |||||||||||||| |||||||||||| |||| ||||
Sbjct: 41  ctaagcttgagacacttattttgggacggagggagta 5



 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 16 atactccctctgtcccaaaataagtgtctcaa 47
          |||||||||| |||||||||||||||||||||
Sbjct: 4  atactccctccgtcccaaaataagtgtctcaa 35




>RF00906;MIR1122;AF474373.1/50497-50394 112509:Hordeum vulgare
           subsp. vulgare (domesticated barley)
          Length = 104

 Score =  111 bits (56), Expect = 2e-24
 Identities = 71/76 (93%)
 Strand = Plus / Minus

                                                                       
Query: 28  tcccaaaataagtgtctcaactttatactagctttagtacaaatttgtactaagcttgag 87
           |||||||||||||||||||||||| |||||| | ||||||||| |||||||| |||||||
Sbjct: 90  tcccaaaataagtgtctcaactttgtactagttctagtacaaagttgtactaggcttgag 31

                           
Query: 88  acagttattttgggac 103
           ||||||||||||||||
Sbjct: 30  acagttattttgggac 15




>RF00906;MIR1122;EU282771.1/632-528 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 105

 Score =  109 bits (55), Expect = 9e-24
 Identities = 88/99 (88%)
 Strand = Plus / Minus

                                                                       
Query: 17  tactccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaatttgta 76
           ||||||||| ||| |||||||||| ||||||||||| ||||||| ||||| ||| |||||
Sbjct: 101 tactccctccgtctcaaaataagtatctcaactttacactagctctagtataaagttgta 42

                                                  
Query: 77  ctaagcttgagacagttattttgggacagaggaagtact 115
           ||||| |||||| |||||||||||||| |||| ||||||
Sbjct: 41  ctaagtttgagaaagttattttgggacggagggagtact 3




>RF00906;MIR1122;AJ400714.1/3663-3767 4565:Triticum aestivum (bread
           wheat)
          Length = 105

 Score =  105 bits (53), Expect = 1e-22
 Identities = 86/97 (88%)
 Strand = Plus / Plus

                                                                       
Query: 17  tactccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaatttgta 76
           |||||| || ||||||||||||||||||||| |||| |||| || ||||||||| |||||
Sbjct: 5   tactccttccgtcccaaaataagtgtctcaattttacactaactctagtacaaagttgta 64

                                                
Query: 77  ctaagcttgagacagttattttgggacagaggaagta 113
           ||||| |||||||| |||||||||||| |||| ||||
Sbjct: 65  ctaaggttgagacacttattttgggacggagggagta 101



 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                            
Query: 16  atactccctctgtcccaaaataagtgtctcaac 48
           |||||||||| ||||||||||||||||||||||
Sbjct: 102 atactccctccgtcccaaaataagtgtctcaac 70




>RF00906;MIR1122;DQ871219.1/106890-106994 85692:Triticum turgidum
           subsp. dicoccoides
          Length = 105

 Score =  105 bits (53), Expect = 1e-22
 Identities = 86/97 (88%)
 Strand = Plus / Minus

                                                                       
Query: 17  tactccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaatttgta 76
           |||||||||  |||||||||||||||||||||||| ||||| || |||||||||||| ||
Sbjct: 101 tactccctccatcccaaaataagtgtctcaactttgtactatctctagtacaaattttta 42

                                                
Query: 77  ctaagcttgagacagttattttgggacagaggaagta 113
           |||||||  ||||| |||||||||||| |||| ||||
Sbjct: 41  ctaagctcaagacacttattttgggacggagggagta 5



 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 16 atactccctctgtcccaaaataagtgtct 44
          |||||||||| ||||||||||||||||||
Sbjct: 4  atactccctccgtcccaaaataagtgtct 32




>RF00906;MIR1122;AJ234485.1/114-218 4513:Hordeum vulgare
          Length = 105

 Score =  103 bits (52), Expect = 6e-22
 Identities = 88/100 (88%)
 Strand = Plus / Minus

                                                                       
Query: 17  tactccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaatttgta 76
           ||||||||||||| |||||||| ||||||||| || |||||||| ||||||||| |||||
Sbjct: 101 tactccctctgtctcaaaataactgtctcaacattgtactagctctagtacaaaattgta 42

                                                   
Query: 77  ctaagcttgagacagttattttgggacagaggaagtacta 116
           ||||| || ||||| |||||||| ||| |||| |||||||
Sbjct: 41  ctaagattaagacacttattttgagacggagggagtacta 2



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 83  ttgagacagttattttgggacagaggaagta 113
           ||||||||||||||||| |||||||| ||||
Sbjct: 71  ttgagacagttattttgagacagagggagta 101




>RF00906;MIR1122;EU282768.1/632-528 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 105

 Score =  101 bits (51), Expect = 2e-21
 Identities = 87/99 (87%)
 Strand = Plus / Minus

                                                                       
Query: 17  tactccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaatttgta 76
           ||||||||| ||| |||||||||| ||||| ||||| ||||||| ||||| ||| |||||
Sbjct: 101 tactccctccgtctcaaaataagtatctcagctttacactagctctagtataaagttgta 42

                                                  
Query: 77  ctaagcttgagacagttattttgggacagaggaagtact 115
           ||||| |||||| |||||||||||||| |||| ||||||
Sbjct: 41  ctaagtttgagaaagttattttgggacggagggagtact 3




>RF00906;MIR1122;FJ184990.1/3303-3406 4565:Triticum aestivum (bread
           wheat)
          Length = 104

 Score = 99.6 bits (50), Expect = 9e-21
 Identities = 87/98 (88%), Gaps = 1/98 (1%)
 Strand = Plus / Minus

                                                                       
Query: 16  atactccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaatttgt 75
           |||||||||| |||||||||||||||||||| |||| ||||| || ||||| ||| ||||
Sbjct: 101 atactccctccgtcccaaaataagtgtctca-ctttgtactaactctagtataaaattgt 43

                                                 
Query: 76  actaagcttgagacagttattttgggacagaggaagta 113
           |||||| |||||||| |||||||||||| |||| ||||
Sbjct: 42  actaaggttgagacacttattttgggacggagggagta 5



 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                           
Query: 16 atactccctctgtcccaaaataagtgtctcaac 48
          |||||||||| ||||||||||||||||||||||
Sbjct: 4  atactccctccgtcccaaaataagtgtctcaac 36




>RF00906;MIR1122;DQ901436.1/1229-1333 4565:Triticum aestivum
          (bread wheat)
          Length = 105

 Score = 97.6 bits (49), Expect = 3e-20
 Identities = 73/81 (90%)
 Strand = Plus / Plus

                                                                      
Query: 19 ctccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaatttgtact 78
          ||||||| ||||||||||||||||||||||||| ||||||||||| |||||| |||||||
Sbjct: 7  ctccctccgtcccaaaataagtgtctcaactttgtactagctttaatacaaagttgtact 66

                               
Query: 79 aagcttgagacagttattttg 99
          |   |||||||| ||||||||
Sbjct: 67 agagttgagacacttattttg 87




>RF00906;MIR1122;AJ249141.1/1014-910 4513:Hordeum vulgare
          Length = 105

 Score = 97.6 bits (49), Expect = 3e-20
 Identities = 82/93 (88%)
 Strand = Plus / Minus

                                                                       
Query: 16  atactccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaatttgt 75
           |||||||||| ||| |||||||| |||||||||||| || ||||| ||||||||| ||||
Sbjct: 102 atactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagttgt 43

                                            
Query: 76  actaagcttgagacagttattttgggacagagg 108
           ||||||||| ||||| ||||||| |||| ||||
Sbjct: 42  actaagcttaagacacttattttaggaccgagg 10




>RF00906;MIR1122;EU282770.1/593-711 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 119

 Score = 97.6 bits (49), Expect = 3e-20
 Identities = 79/89 (88%)
 Strand = Plus / Plus

                                                                       
Query: 17  tactccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaatttgta 76
           ||||||||| ||| ||||||| ||||||||||||||  |||||| ||||| ||| |||||
Sbjct: 5   tactccctccgtctcaaaataggtgtctcaactttaccctagctctagtataaagttgta 64

                                        
Query: 77  ctaagcttgagacagttattttgggacag 105
           ||||| |||||| ||||||||||||||||
Sbjct: 65  ctaagtttgagaaagttattttgggacag 93




>RF00906;MIR1122;AY133251.1/901-1005 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 105

 Score = 97.6 bits (49), Expect = 3e-20
 Identities = 85/97 (87%)
 Strand = Plus / Minus

                                                                       
Query: 17  tactccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaatttgta 76
           ||||||||| |||||||||||| |||||||||||| |||||||| ||||||||| |||||
Sbjct: 101 tactccctccgtcccaaaataactgtctcaactttgtactagctctagtacaaaattgta 42

                                                
Query: 77  ctaagcttgagacagttattttgggacagaggaagta 113
           ||| |||  ||||| ||||||||| || |||| ||||
Sbjct: 41  ctacgctcaagacacttattttggaacggagggagta 5



 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 83  ttgagacagttattttgggacagaggaagtac 114
           ||||||||||||||||||||| |||| |||||
Sbjct: 71  ttgagacagttattttgggacggagggagtac 102




>RF00906;MIR1122;DQ995510.1/1615-1718 4513:Hordeum vulgare
          Length = 104

 Score = 97.6 bits (49), Expect = 3e-20
 Identities = 86/97 (88%), Gaps = 1/97 (1%)
 Strand = Plus / Minus

                                                                       
Query: 17  tactccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaatttgta 76
           |||||||||  ||||||||||| |||||||||||| |||||||| ||||||||| |||||
Sbjct: 100 tactccctccatcccaaaataactgtctcaactttgtactagctctagtacaaagttgta 41

                                                
Query: 77  ctaagcttgagacagttattttgggacagaggaagta 113
           | ||| ||||||||||||||||| ||| |||| ||||
Sbjct: 40  caaag-ttgagacagttattttgagacggagggagta 5



 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                              
Query: 16 atactccctctgtcccaaaataagtgtctcaacttt 51
          |||||||||| ||| |||||||| ||||||||||||
Sbjct: 4  atactccctccgtctcaaaataactgtctcaacttt 39



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 83  ttgagacagttattttgggacagaggaagtacta 116
           ||||||||||||||||||||  |||| |||||||
Sbjct: 70  ttgagacagttattttgggatggagggagtacta 103




>RF00906;MIR1122;AK249748.1/2677-2573 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 105

 Score = 95.6 bits (48), Expect = 1e-19
 Identities = 87/100 (87%)
 Strand = Plus / Plus

                                                                       
Query: 17  tactccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaatttgta 76
           |||||||||||| ||||||||| ||||| |||||| ||||||||||| || |||||| ||
Sbjct: 5   tactccctctgttccaaaataactgtcttaactttgtactagctttactataaatttata 64

                                                   
Query: 77  ctaagcttgagacagttattttgggacagaggaagtacta 116
           ||||| || ||||| |||||||| ||| |||| |||||||
Sbjct: 65  ctaagtttaagacatttattttgcgacggagggagtacta 104



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 86  agacagttattttgggacagaggaagtacta 116
           ||||||||||||||| ||||||| |||||||
Sbjct: 32  agacagttattttggaacagagggagtacta 2




>RF00906;MIR1122;AY821694.1/1308-1197 37674:Crithopsis delileana
          Length = 112

 Score = 95.6 bits (48), Expect = 1e-19
 Identities = 63/68 (92%)
 Strand = Plus / Minus

                                                                       
Query: 16  atactccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaatttgt 75
           ||||||||||  |||||||||||||||||||||||| ||||| |||||||||||| ||||
Sbjct: 109 atactccctccatcccaaaataagtgtctcaactttgtactaactttagtacaaagttgt 50

                   
Query: 76  actaagct 83
           ||||||||
Sbjct: 49  actaagct 42



 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 17 tactccctctgtcccaaaataagtgtct 44
          ||||||||| ||||||||||||||||||
Sbjct: 5  tactccctccgtcccaaaataagtgtct 32




>RF00906;MIR1122;AJ234583.1/157-260 4513:Hordeum vulgare
          Length = 104

 Score = 91.7 bits (46), Expect = 2e-18
 Identities = 89/102 (87%), Gaps = 1/102 (0%)
 Strand = Plus / Plus

                                                                       
Query: 16  atactccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaatttgt 75
           |||||||||| ||| |||||||||| ||| || ||||||||||||| ||| |||| || |
Sbjct: 4   atactccctccgtctcaaaataagtttcttaattttatactagctt-agtgcaaagttat 62

                                                     
Query: 76  actaagcttgagacagttattttgggacagaggaagtactaa 117
           ||||||||||||||| |||||||| ||| |||| ||||||||
Sbjct: 63  actaagcttgagacaattattttgagacggagggagtactaa 104




>RF00906;MIR1122;AF488415.1/78603-78755 4568:Triticum monococcum
          Length = 153

 Score = 89.7 bits (45), Expect = 8e-18
 Identities = 66/73 (90%)
 Strand = Plus / Minus

                                                                       
Query: 16  atactccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaatttgt 75
           |||||||||| |||||||||||| |||||||| ||| ||||| |||||||||||| ||||
Sbjct: 150 atactccctccgtcccaaaataactgtctcaagtttgtactaactttagtacaaagttgt 91

                        
Query: 76  actaagcttgaga 88
           |||||| ||||||
Sbjct: 90  actaaggttgaga 78



 Score = 69.9 bits (35), Expect = 8e-12
 Identities = 56/63 (88%)
 Strand = Plus / Minus

                                                                       
Query: 41  gtctcaactttatactagctttagtacaaatttgtactaagcttgagacagttattttgg 100
           ||||||||||| |||||  |||||| |||| |||||||||| |||||||| |||||||||
Sbjct: 77  gtctcaactttgtactaaatttagtgcaaagttgtactaaggttgagacacttattttgg 18

              
Query: 101 gac 103
           |||
Sbjct: 17  gac 15



 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 82  cttgagacagttattttgggacagaggaagta 113
           |||||||||||||||||||||| |||| ||||
Sbjct: 118 cttgagacagttattttgggacggagggagta 149



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 27 gtcccaaaataagtgtctcaac 48
          ||||||||||||||||||||||
Sbjct: 15 gtcccaaaataagtgtctcaac 36




>RF00906;MIR1122;AY943294.1/62260-62364 112509:Hordeum vulgare
           subsp. vulgare (domesticated barley)
          Length = 105

 Score = 89.7 bits (45), Expect = 8e-18
 Identities = 84/97 (86%)
 Strand = Plus / Minus

                                                                       
Query: 17  tactccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaatttgta 76
           |||| |||| |||||||||||| |||||||||||| || ||| ||||||||||| |||||
Sbjct: 101 tacttcctccgtcccaaaataactgtctcaactttgtattagatttagtacaaaattgta 42

                                                
Query: 77  ctaagcttgagacagttattttgggacagaggaagta 113
            ||||||| ||||| ||||||||| || |||| ||||
Sbjct: 41  ttaagcttaagacacttattttggaacggagggagta 5



 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 83  ttgagacagttattttgggacagaggaagtac 114
           ||||||||||||||||||||| ||||||||||
Sbjct: 71  ttgagacagttattttgggacggaggaagtac 102




>RF00906;MIR1122;AF521177.1/206122-206018 4513:Hordeum vulgare
          Length = 105

 Score = 85.7 bits (43), Expect = 1e-16
 Identities = 73/83 (87%)
 Strand = Plus / Minus

                                                                       
Query: 17  tactccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaatttgta 76
           ||||||||| ||  |||||||| |||||||||||| |||||||| ||||||||| |||||
Sbjct: 101 tactccctccgtttcaaaataaatgtctcaactttgtactagctctagtacaaagttgta 42

                                  
Query: 77  ctaagcttgagacagttattttg 99
           |||||| ||| ||| ||||||||
Sbjct: 41  ctaagcatgaaacaattattttg 19




>RF00906;MIR1122;AK252392.1/1279-1175 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 105

 Score = 79.8 bits (40), Expect = 8e-15
 Identities = 79/92 (85%)
 Strand = Plus / Minus

                                                                       
Query: 17  tactccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaatttgta 76
           ||||||||| |||||||||||  ||||| |||||| ||||||||   ||| ||| |||||
Sbjct: 101 tactccctccgtcccaaaatatctgtcttaactttgtactagctcatgtataaaattgta 42

                                           
Query: 77  ctaagcttgagacagttattttgggacagagg 108
           |||||||| ||||| |||||||||||| ||||
Sbjct: 41  ctaagcttaagacacttattttgggacggagg 10




>RF00906;MIR1122;DQ175992.1/50-154 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 105

 Score = 75.8 bits (38), Expect = 1e-13
 Identities = 71/82 (86%)
 Strand = Plus / Minus

                                                                       
Query: 17  tactccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaatttgta 76
           ||||||||| |||||||||||| ||||| |||||| | |||||| ||||| ||| || ||
Sbjct: 101 tactccctccgtcccaaaataattgtcttaactttgttctagctctagtataaaattata 42

                                 
Query: 77  ctaagcttgagacagttatttt 98
           |||||||| ||||| |||||||
Sbjct: 41  ctaagcttaagacacttatttt 20




>RF00906;MIR1122;FJ477093.1/40908-41001 4513:Hordeum vulgare
          Length = 94

 Score = 75.8 bits (38), Expect = 1e-13
 Identities = 50/54 (92%)
 Strand = Plus / Minus

                                                                
Query: 17 tactccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaa 70
          ||||||||| |||||||| |||||| ||||||||||||||| ||||||||||||
Sbjct: 90 tactccctccgtcccaaattaagtgactcaactttatactaactttagtacaaa 37



 Score = 67.9 bits (34), Expect = 3e-11
 Identities = 40/42 (95%)
 Strand = Plus / Plus

                                                    
Query: 16 atactccctctgtcccaaaataagtgtctcaactttatacta 57
          |||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 4  atactccctctgtcccaaaataagtgactcaactttgtacta 45




>RF00906;MIR1122;AY663392.1/117099-117203 4565:Triticum aestivum
           (bread wheat)
          Length = 105

 Score = 69.9 bits (35), Expect = 8e-12
 Identities = 71/83 (85%)
 Strand = Plus / Minus

                                                                       
Query: 16  atactccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaatttgt 75
           ||||||||||  ||||||||||||||| | || ||| || ||||||||||| ||| || |
Sbjct: 102 atactccctccatcccaaaataagtgtgttaattttgtattagctttagtataaagttat 43

                                  
Query: 76  actaagcttgagacagttatttt 98
           |||||| |||||||| |||||||
Sbjct: 42  actaagattgagacacttatttt 20




>RF00906;MIR1122;U29095.1/333-439 4565:Triticum aestivum (bread
          wheat)
          Length = 107

 Score = 67.9 bits (34), Expect = 3e-11
 Identities = 52/57 (91%), Gaps = 2/57 (3%)
 Strand = Plus / Plus

                                                                   
Query: 16 atactccctctgtcccaaaataagtg--tctcaactttatactagctttagtacaaa 70
          |||||||||| |||||||||||||||  ||||||||||||||||  |||||||||||
Sbjct: 4  atactccctccgtcccaaaataagtggatctcaactttatactatttttagtacaaa 60




>RF00906;MIR1122;AB183299.1/312-404 4565:Triticum aestivum (bread
           wheat)
          Length = 93

 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 50/55 (90%), Gaps = 1/55 (1%)
 Strand = Plus / Plus

                                                                  
Query: 59  ctttagtacaaatttgtactaagcttgagacagttattttgggacagaggaagta 113
           |||||||| || ||||||||||| |||||||| |||||||||||| |||||||||
Sbjct: 36  ctttagtataactttgtactaag-ttgagacacttattttgggacggaggaagta 89



 Score = 60.0 bits (30), Expect = 8e-09
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                            
Query: 19 ctccctctgtcccaaaataagtgtctcaacttta 52
          ||||||| ||||||||||||||||||||||||||
Sbjct: 7  ctccctccgtcccaaaataagtgtctcaacttta 40



 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                             
Query: 16 atactccctctgtcccaaaataagtgtctcaactt 50
          ||||| |||| ||||||||||||||||||||||||
Sbjct: 90 atacttcctccgtcccaaaataagtgtctcaactt 56



 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                           
Query: 61  ttagtacaaatttgtactaagcttgagacagttattttgggacagagg 108
           |||||||||| || ||||||  |||||||| |||||||||||| ||||
Sbjct: 57  ttagtacaaagttatactaaagttgagacacttattttgggacggagg 10




>RF00906;MIR1122;AK252095.1/1820-1925 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 106

 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                  
Query: 16  atactccctctgtcccaaaataagtgtctcaactttata 54
           |||||||||||||||||||||||||||| ||| ||||||
Sbjct: 103 atactccctctgtcccaaaataagtgtcacaaatttata 65




>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
          Length = 132

 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 43/47 (91%)
 Strand = Plus / Plus

                                                         
Query: 16 atactccctctgtcccaaaataagtgtctcaactttatactagcttt 62
          |||||||||| ||||||||||||||| ||||||||| ||||| ||||
Sbjct: 4  atactccctccgtcccaaaataagtgactcaactttgtactaacttt 50



 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                
Query: 28  tcccaaaataagtgtctcaactttatactagctttag 64
           |||||||||||||| ||||||||| ||||| ||||||
Sbjct: 117 tcccaaaataagtgactcaactttgtactaactttag 81




>RF00906;MIR1122;AF521177.1/81577-81474 4513:Hordeum vulgare
          Length = 104

 Score = 60.0 bits (30), Expect = 8e-09
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                     
Query: 16  atactccctctgtcccaaaataagtgtctcaactttatacta 57
           |||||||||| ||||||||||||||| ||||||||| |||||
Sbjct: 101 atactccctccgtcccaaaataagtgactcaactttgtacta 60




>RF00906;MIR1122;FJ374624.1/2920-2820 4572:Triticum urartu
          Length = 101

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                   
Query: 17 tactccctctgtcccaaaataagtgtctcaactttatacta 57
          ||||| ||||||||||||||||||| ||||||||| |||||
Sbjct: 97 tactcgctctgtcccaaaataagtgactcaactttgtacta 57




>RF00906;MIR1122;FJ491378.1/4581-4466 4550:Secale cereale (rye)
          Length = 116

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 16 atactccctctgtcccaaaataagtgtctcaa 47
          |||||||||||||||||||||||||| |||||
Sbjct: 4  atactccctctgtcccaaaataagtgactcaa 35



 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 16  atactccctctgtcccaaaataagtgtctcaa 47
           |||||||||| ||||||||||||||| |||||
Sbjct: 113 atactccctccgtcccaaaataagtgactcaa 82




>RF00906;MIR1122;AK250735.1/291-376 112509:Hordeum vulgare subsp.
          vulgare (domesticated barley)
          Length = 86

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 39/42 (92%), Gaps = 1/42 (2%)
 Strand = Plus / Plus

                                                    
Query: 17 tactccctctgtcccaaaataagtgtct-caactttatacta 57
          ||||||||| |||||||||||||||||| ||||||| |||||
Sbjct: 5  tactccctccgtcccaaaataagtgtctccaactttgtacta 46




>RF00906;MIR1122;DQ267106.1/62901-62968 4572:Triticum urartu
          Length = 68

 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                   
Query: 17 tactccctctgtcccaaaataagtg 41
          |||||||||||||||||||||||||
Sbjct: 64 tactccctctgtcccaaaataagtg 40



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 16 atactccctctgtcccaaaataagtg 41
          |||||||||| |||||||||||||||
Sbjct: 4  atactccctccgtcccaaaataagtg 29




>RF00906;MIR1122;AJ507395.1/7785-7899 112509:Hordeum vulgare
          subsp. vulgare (domesticated barley)
          Length = 115

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 20 tccctctgtcccaaaataagtgtctcaa 47
          |||||||||||||||||||||| |||||
Sbjct: 8  tccctctgtcccaaaataagtgactcaa 35



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 17  tactccctctgtcccaaaataagtgtctcaa 47
           ||||||||| ||||||||||||||| |||||
Sbjct: 111 tactccctccgtcccaaaataagtgactcaa 81




>RF00906;MIR1122;EU282251.1/1314-1209 52152:Elymus repens
          Length = 106

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                              
Query: 17 tactccctctgtcccaaaataagtgtctcaacttta 52
          ||||||||| ||||||||||||||||| ||| ||||
Sbjct: 5  tactccctccgtcccaaaataagtgtcgcaaattta 40



 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 16  atactccctctgtcccaaaataagtgtc 43
           |||||||||| |||||||||||||||||
Sbjct: 103 atactccctccgtcccaaaataagtgtc 76




>RF00906;MIR1122;AACV01004030.1/351-512 39947:Oryza sativa
          Japonica Group
          Length = 162

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 14 agatactccctctgtcccaaaata 37
          ||||||||||||||||||||||||
Sbjct: 2  agatactccctctgtcccaaaata 25




>RF00906;MIR1122;ABXC01004408.1/208298-208202 4558:Sorghum bicolor
          (sorghum)
          Length = 97

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 17 tactccctctgtcccaaaataagtgtc 43
          |||||||||||||||||||| ||||||
Sbjct: 5  tactccctctgtcccaaaatgagtgtc 31




>RF00906;MIR1122;AF488415.1/128685-128592 4568:Triticum monococcum
          Length = 94

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 47/55 (85%)
 Strand = Plus / Minus

                                                                 
Query: 16 atactccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaa 70
          ||||||||||  | ||||||||  || ||||||||| ||||| ||||||||||||
Sbjct: 91 atactccctccattccaaaatagatgactcaactttgtactaactttagtacaaa 37




>RF00906;MIR1122;AB182945.1/6773-6906 4565:Triticum aestivum (bread
           wheat)
          Length = 134

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 16  atactccctctgtcccaaaataagtgtctca 46
           |||||||||| || |||||||||||||||||
Sbjct: 131 atactccctccgttccaaaataagtgtctca 101




>RF00906;MIR1122;EU626553.1/80133-80237 4572:Triticum urartu
          Length = 105

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                         
Query: 17 tactccctctgtcccaaaataagtgtctcaactttatactagcttta 63
          ||||||||| || ||||||||  || ||||||||||||||| |||||
Sbjct: 5  tactccctccgttccaaaatagatgactcaactttatactaacttta 51




>RF00906;MIR1122;EU282656.1/645-750 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 106

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 17  tactccctctgtcccaaaataagtgtc 43
           ||||||||| |||||||||||||||||
Sbjct: 102 tactccctcggtcccaaaataagtgtc 76




>RF00906;MIR1122;AAAA02021906.1/16695-16573 39946:Oryza sativa
           Indica Group
          Length = 123

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 16  atactccctctgtcccaaaataa 38
           |||||||||||||||||||||||
Sbjct: 120 atactccctctgtcccaaaataa 98




>RF01058;MIR806;AP008208.1/6823788-6823544 39947:Oryza sativa
           Japonica Group
          Length = 245

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 16  atactccctctgtcccaaaataagtg 41
           |||||||||| |||||||||||||||
Sbjct: 245 atactccctccgtcccaaaataagtg 220




>RF01058;MIR806;AL731615.4/103346-103100 39947:Oryza sativa
          Japonica Group
          Length = 247

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 17 tactccctctgtcccaaaataagtgt 42
          ||||||||| ||||||||||||||||
Sbjct: 2  tactccctccgtcccaaaataagtgt 27




>RF01058;MIR806;AACV01008707.1/8338-8098 39947:Oryza sativa
          Japonica Group
          Length = 241

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 16 atactccctctgtcccaaaata 37
          ||||||||||||||||||||||
Sbjct: 1  atactccctctgtcccaaaata 22




>RF01058;MIR806;AACV01025022.1/35011-35254 39947:Oryza sativa
          Japonica Group
          Length = 244

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 16 atactccctctgtcccaaaataagtg 41
          |||||||||| |||||||||||||||
Sbjct: 1  atactccctccgtcccaaaataagtg 26




>RF01058;MIR806;AC136971.3/14967-14725 39947:Oryza sativa Japonica
           Group
          Length = 243

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 16  atactccctctgtcccaaaata 37
           ||||||||||||||||||||||
Sbjct: 243 atactccctctgtcccaaaata 222




>RF01058;MIR806;AAAA02004537.1/25464-25706 39946:Oryza sativa
          Indica Group
          Length = 243

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 16 atactccctctgtcccaaaataagtg 41
          |||||||||| |||||||||||||||
Sbjct: 1  atactccctccgtcccaaaataagtg 26




>RF01058;MIR806;AAAA02009876.1/3121-2881 39946:Oryza sativa Indica
           Group
          Length = 241

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 16  atactccctctgtcccaaaataagtg 41
           |||||||||| |||||||||||||||
Sbjct: 241 atactccctccgtcccaaaataagtg 216




>RF00906;MIR1122;AP008214.1/14410723-14410632 39947:Oryza sativa
          Japonica Group
          Length = 92

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 16 atactccctctgtcccaaaataagtg 41
          |||||||||| |||||||||||||||
Sbjct: 4  atactccctccgtcccaaaataagtg 29




>RF00906;MIR1122;AP008212.1/3593579-3593709 39947:Oryza sativa
           Japonica Group
          Length = 131

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 16  atactccctctgtcccaaaata 37
           ||||||||||||||||||||||
Sbjct: 128 atactccctctgtcccaaaata 107




>RF00906;MIR1122;AACV01009606.1/13757-13637 39947:Oryza sativa
           Japonica Group
          Length = 121

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 17  tactccctctgtcccaaaataa 38
           ||||||||||||||||||||||
Sbjct: 117 tactccctctgtcccaaaataa 96




>RF00906;MIR1122;AAAA02008325.1/22579-22685 39946:Oryza sativa
          Indica Group
          Length = 107

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 16 atactccctctgtcccaaaataagtg 41
          |||||||||||||||||| |||||||
Sbjct: 4  atactccctctgtcccaatataagtg 29




>RF00906;MIR1122;AP004740.3/39878-39774 39947:Oryza sativa Japonica
           Group
          Length = 105

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 92  ttattttgggacagaggaagta 113
           ||||||||||||||||||||||
Sbjct: 26  ttattttgggacagaggaagta 5




>RF00906;MIR1122;AACV01015822.1/5399-5292 39947:Oryza sativa
          Japonica Group
          Length = 108

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 16 atactccctctgtcccaaaata 37
          ||||||||||||||||||||||
Sbjct: 4  atactccctctgtcccaaaata 25