miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AK249560.1/988-1092 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 135 bits (68), Expect = 1e-31
Identities = 92/100 (92%)
Strand = Plus / Plus
Query: 11 gatactccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaatttg 70
|||||||| || |||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 3 gatactccatccgtcccaaaataagtgtctcaactttatactagctatagtacaaacttg 62
Query: 71 tactaagcttgagacagttattttgggacagaggaagtac 110
|| |||| ||||||||||||||||||||| |||| |||||
Sbjct: 63 tattaagtttgagacagttattttgggacggagggagtac 102
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 13 tactccctctgtcccaaaataagtgtctcaa 43
||||||||| |||||||||||| ||||||||
Sbjct: 101 tactccctccgtcccaaaataactgtctcaa 71
>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 123 bits (62), Expect = 6e-28
Identities = 89/98 (90%)
Strand = Plus / Minus
Query: 12 atactccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaatttgt 71
|||||||||| ||||||||||||||||||||||||| |||||||| ||||||||| ||
Sbjct: 102 atactccctccgtcccaaaataagtgtctcaactttgtactagctgtagtacaaaattac 43
Query: 72 actaagcttgagacagttattttgggacagaggaagta 109
||||||||||||||| |||||||||||| |||| ||||
Sbjct: 42 actaagcttgagacacttattttgggacggagggagta 5
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 13 tactccctctgtcccaaaataagtgtctcaa 43
||||||||| |||||||||||||||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgtctcaa 35
>RF00906;MIR1122;EU593539.1/914-1018 4513:Hordeum vulgare
Length = 105
Score = 123 bits (62), Expect = 6e-28
Identities = 89/98 (90%)
Strand = Plus / Minus
Query: 12 atactccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaatttgt 71
|||||||||| |||||||||||| ||||||||||||||||||| | ||||| |||||| |
Sbjct: 102 atactccctccgtcccaaaataactgtctcaactttatactagatctagtataaatttat 43
Query: 72 actaagcttgagacagttattttgggacagaggaagta 109
||||||||| |||||||||||||||||| |||| ||||
Sbjct: 42 actaagcttaagacagttattttgggacggagggagta 5
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 79 ttgagacagttattttgggacagaggaagta 109
||||||||||||||||||||| |||| ||||
Sbjct: 71 ttgagacagttattttgggacggagggagta 101
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 121 bits (61), Expect = 2e-27
Identities = 88/97 (90%)
Strand = Plus / Minus
Query: 13 tactccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaatttgta 72
||||||||| |||||||||||| |||||||||||| || || |||||||||||| |||||
Sbjct: 101 tactccctccgtcccaaaataaatgtctcaactttgtattaactttagtacaaagttgta 42
Query: 73 ctaagcttgagacagttattttgggacagaggaagta 109
|||||||||||||| |||||||||||| |||| ||||
Sbjct: 41 ctaagcttgagacacttattttgggacggagggagta 5
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 12 atactccctctgtcccaaaataagtgtctcaa 43
|||||||||| |||||||||||||||||||||
Sbjct: 4 atactccctccgtcccaaaataagtgtctcaa 35
>RF00906;MIR1122;X83518.1/7301-7197 4513:Hordeum vulgare
Length = 105
Score = 119 bits (60), Expect = 9e-27
Identities = 78/84 (92%)
Strand = Plus / Minus
Query: 12 atactccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaatttgt 71
||||||||||| | |||||||||||||||||||||| |||||||| || |||||| ||||
Sbjct: 102 atactccctctcttccaaaataagtgtctcaactttgtactagctctactacaaagttgt 43
Query: 72 actaagcttgagacagttattttg 95
||||||||||||||||||||||||
Sbjct: 42 actaagcttgagacagttattttg 19
>RF00906;MIR1122;DQ445238.1/5626-5730 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 115 bits (58), Expect = 1e-25
Identities = 88/98 (89%)
Strand = Plus / Minus
Query: 12 atactccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaatttgt 71
|||||||||| |||||||||||| ||||||||||||||||||| | || || |||||| |
Sbjct: 102 atactccctccgtcccaaaataactgtctcaactttatactagatctaatataaatttat 43
Query: 72 actaagcttgagacagttattttgggacagaggaagta 109
||||||||| |||||||||||||||||| |||| ||||
Sbjct: 42 actaagcttaagacagttattttgggacggagggagta 5
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 79 ttgagacagttattttgggacagaggaagta 109
||||||||||||||||||||| |||| ||||
Sbjct: 71 ttgagacagttattttgggacggagggagta 101
>RF00906;MIR1122;DQ445236.1/13423-13319 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 115 bits (58), Expect = 1e-25
Identities = 88/98 (89%)
Strand = Plus / Plus
Query: 12 atactccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaatttgt 71
|||||||||| || |||||||||||||||||| ||| |||||||| ||||||||| ||||
Sbjct: 4 atactccctccgttccaaaataagtgtctcaaatttgtactagctctagtacaaagttgt 63
Query: 72 actaagcttgagacagttattttgggacagaggaagta 109
||||||||||||| ||||||||||| || |||| ||||
Sbjct: 64 actaagcttgagatagttattttggaacggagggagta 101
>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
Length = 105
Score = 115 bits (58), Expect = 1e-25
Identities = 88/98 (89%)
Strand = Plus / Minus
Query: 13 tactccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaatttgta 72
||||||||| |||||||||||||||||| |||||| ||||| |||||||||||| |||||
Sbjct: 101 tactccctccgtcccaaaataagtgtcttaactttgtactaactttagtacaaagttgta 42
Query: 73 ctaagcttgagacagttattttgggacagaggaagtac 110
||| |||||||||| |||||||| ||| |||| |||||
Sbjct: 41 ctaggcttgagacacttattttgagacggagggagtac 4
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 13 tactccctctgtcccaaaataagtgtctcaa 43
||||||||| ||| |||||||||||||||||
Sbjct: 5 tactccctccgtctcaaaataagtgtctcaa 35
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 113 bits (57), Expect = 5e-25
Identities = 87/97 (89%)
Strand = Plus / Minus
Query: 13 tactccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaatttgta 72
||||||||| |||||||||||| |||||||||||| || || ||||||||||| |||||
Sbjct: 101 tactccctccgtcccaaaataaatgtctcaactttgtattaactttagtacaaggttgta 42
Query: 73 ctaagcttgagacagttattttgggacagaggaagta 109
|||||||||||||| |||||||||||| |||| ||||
Sbjct: 41 ctaagcttgagacacttattttgggacggagggagta 5
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 12 atactccctctgtcccaaaataagtgtctcaa 43
|||||||||| |||||||||||||||||||||
Sbjct: 4 atactccctccgtcccaaaataagtgtctcaa 35
>RF00906;MIR1122;AF474373.1/50497-50394 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 104
Score = 111 bits (56), Expect = 2e-24
Identities = 71/76 (93%)
Strand = Plus / Minus
Query: 24 tcccaaaataagtgtctcaactttatactagctttagtacaaatttgtactaagcttgag 83
|||||||||||||||||||||||| |||||| | ||||||||| |||||||| |||||||
Sbjct: 90 tcccaaaataagtgtctcaactttgtactagttctagtacaaagttgtactaggcttgag 31
Query: 84 acagttattttgggac 99
||||||||||||||||
Sbjct: 30 acagttattttgggac 15
>RF00906;MIR1122;EU282771.1/632-528 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 109 bits (55), Expect = 8e-24
Identities = 88/99 (88%)
Strand = Plus / Minus
Query: 13 tactccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaatttgta 72
||||||||| ||| |||||||||| ||||||||||| ||||||| ||||| ||| |||||
Sbjct: 101 tactccctccgtctcaaaataagtatctcaactttacactagctctagtataaagttgta 42
Query: 73 ctaagcttgagacagttattttgggacagaggaagtact 111
||||| |||||| |||||||||||||| |||| ||||||
Sbjct: 41 ctaagtttgagaaagttattttgggacggagggagtact 3
>RF00906;MIR1122;AJ400714.1/3663-3767 4565:Triticum aestivum (bread
wheat)
Length = 105
Score = 105 bits (53), Expect = 1e-22
Identities = 86/97 (88%)
Strand = Plus / Plus
Query: 13 tactccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaatttgta 72
|||||| || ||||||||||||||||||||| |||| |||| || ||||||||| |||||
Sbjct: 5 tactccttccgtcccaaaataagtgtctcaattttacactaactctagtacaaagttgta 64
Query: 73 ctaagcttgagacagttattttgggacagaggaagta 109
||||| |||||||| |||||||||||| |||| ||||
Sbjct: 65 ctaaggttgagacacttattttgggacggagggagta 101
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 12 atactccctctgtcccaaaataagtgtctcaac 44
|||||||||| ||||||||||||||||||||||
Sbjct: 102 atactccctccgtcccaaaataagtgtctcaac 70
>RF00906;MIR1122;DQ871219.1/106890-106994 85692:Triticum turgidum
subsp. dicoccoides
Length = 105
Score = 105 bits (53), Expect = 1e-22
Identities = 86/97 (88%)
Strand = Plus / Minus
Query: 13 tactccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaatttgta 72
||||||||| |||||||||||||||||||||||| ||||| || |||||||||||| ||
Sbjct: 101 tactccctccatcccaaaataagtgtctcaactttgtactatctctagtacaaattttta 42
Query: 73 ctaagcttgagacagttattttgggacagaggaagta 109
||||||| ||||| |||||||||||| |||| ||||
Sbjct: 41 ctaagctcaagacacttattttgggacggagggagta 5
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 12 atactccctctgtcccaaaataagtgtct 40
|||||||||| ||||||||||||||||||
Sbjct: 4 atactccctccgtcccaaaataagtgtct 32
>RF00906;MIR1122;AJ234485.1/114-218 4513:Hordeum vulgare
Length = 105
Score = 103 bits (52), Expect = 5e-22
Identities = 88/100 (88%)
Strand = Plus / Minus
Query: 13 tactccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaatttgta 72
||||||||||||| |||||||| ||||||||| || |||||||| ||||||||| |||||
Sbjct: 101 tactccctctgtctcaaaataactgtctcaacattgtactagctctagtacaaaattgta 42
Query: 73 ctaagcttgagacagttattttgggacagaggaagtacta 112
||||| || ||||| |||||||| ||| |||| |||||||
Sbjct: 41 ctaagattaagacacttattttgagacggagggagtacta 2
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 79 ttgagacagttattttgggacagaggaagta 109
||||||||||||||||| |||||||| ||||
Sbjct: 71 ttgagacagttattttgagacagagggagta 101
>RF00906;MIR1122;EU282768.1/632-528 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 101 bits (51), Expect = 2e-21
Identities = 87/99 (87%)
Strand = Plus / Minus
Query: 13 tactccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaatttgta 72
||||||||| ||| |||||||||| ||||| ||||| ||||||| ||||| ||| |||||
Sbjct: 101 tactccctccgtctcaaaataagtatctcagctttacactagctctagtataaagttgta 42
Query: 73 ctaagcttgagacagttattttgggacagaggaagtact 111
||||| |||||| |||||||||||||| |||| ||||||
Sbjct: 41 ctaagtttgagaaagttattttgggacggagggagtact 3
>RF00906;MIR1122;FJ184990.1/3303-3406 4565:Triticum aestivum (bread
wheat)
Length = 104
Score = 99.6 bits (50), Expect = 8e-21
Identities = 87/98 (88%), Gaps = 1/98 (1%)
Strand = Plus / Minus
Query: 12 atactccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaatttgt 71
|||||||||| |||||||||||||||||||| |||| ||||| || ||||| ||| ||||
Sbjct: 101 atactccctccgtcccaaaataagtgtctca-ctttgtactaactctagtataaaattgt 43
Query: 72 actaagcttgagacagttattttgggacagaggaagta 109
|||||| |||||||| |||||||||||| |||| ||||
Sbjct: 42 actaaggttgagacacttattttgggacggagggagta 5
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 12 atactccctctgtcccaaaataagtgtctcaac 44
|||||||||| ||||||||||||||||||||||
Sbjct: 4 atactccctccgtcccaaaataagtgtctcaac 36
>RF00906;MIR1122;DQ901436.1/1229-1333 4565:Triticum aestivum
(bread wheat)
Length = 105
Score = 97.6 bits (49), Expect = 3e-20
Identities = 73/81 (90%)
Strand = Plus / Plus
Query: 15 ctccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaatttgtact 74
||||||| ||||||||||||||||||||||||| ||||||||||| |||||| |||||||
Sbjct: 7 ctccctccgtcccaaaataagtgtctcaactttgtactagctttaatacaaagttgtact 66
Query: 75 aagcttgagacagttattttg 95
| |||||||| ||||||||
Sbjct: 67 agagttgagacacttattttg 87
>RF00906;MIR1122;AJ249141.1/1014-910 4513:Hordeum vulgare
Length = 105
Score = 97.6 bits (49), Expect = 3e-20
Identities = 82/93 (88%)
Strand = Plus / Minus
Query: 12 atactccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaatttgt 71
|||||||||| ||| |||||||| |||||||||||| || ||||| ||||||||| ||||
Sbjct: 102 atactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagttgt 43
Query: 72 actaagcttgagacagttattttgggacagagg 104
||||||||| ||||| ||||||| |||| ||||
Sbjct: 42 actaagcttaagacacttattttaggaccgagg 10
>RF00906;MIR1122;EU282770.1/593-711 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 119
Score = 97.6 bits (49), Expect = 3e-20
Identities = 79/89 (88%)
Strand = Plus / Plus
Query: 13 tactccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaatttgta 72
||||||||| ||| ||||||| |||||||||||||| |||||| ||||| ||| |||||
Sbjct: 5 tactccctccgtctcaaaataggtgtctcaactttaccctagctctagtataaagttgta 64
Query: 73 ctaagcttgagacagttattttgggacag 101
||||| |||||| ||||||||||||||||
Sbjct: 65 ctaagtttgagaaagttattttgggacag 93
>RF00906;MIR1122;AY133251.1/901-1005 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 97.6 bits (49), Expect = 3e-20
Identities = 85/97 (87%)
Strand = Plus / Minus
Query: 13 tactccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaatttgta 72
||||||||| |||||||||||| |||||||||||| |||||||| ||||||||| |||||
Sbjct: 101 tactccctccgtcccaaaataactgtctcaactttgtactagctctagtacaaaattgta 42
Query: 73 ctaagcttgagacagttattttgggacagaggaagta 109
||| ||| ||||| ||||||||| || |||| ||||
Sbjct: 41 ctacgctcaagacacttattttggaacggagggagta 5
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 79 ttgagacagttattttgggacagaggaagtac 110
||||||||||||||||||||| |||| |||||
Sbjct: 71 ttgagacagttattttgggacggagggagtac 102
>RF00906;MIR1122;DQ995510.1/1615-1718 4513:Hordeum vulgare
Length = 104
Score = 97.6 bits (49), Expect = 3e-20
Identities = 86/97 (88%), Gaps = 1/97 (1%)
Strand = Plus / Minus
Query: 13 tactccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaatttgta 72
||||||||| ||||||||||| |||||||||||| |||||||| ||||||||| |||||
Sbjct: 100 tactccctccatcccaaaataactgtctcaactttgtactagctctagtacaaagttgta 41
Query: 73 ctaagcttgagacagttattttgggacagaggaagta 109
| ||| ||||||||||||||||| ||| |||| ||||
Sbjct: 40 caaag-ttgagacagttattttgagacggagggagta 5
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 12 atactccctctgtcccaaaataagtgtctcaacttt 47
|||||||||| ||| |||||||| ||||||||||||
Sbjct: 4 atactccctccgtctcaaaataactgtctcaacttt 39
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 79 ttgagacagttattttgggacagaggaagtacta 112
|||||||||||||||||||| |||| |||||||
Sbjct: 70 ttgagacagttattttgggatggagggagtacta 103
>RF00906;MIR1122;AK249748.1/2677-2573 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 95.6 bits (48), Expect = 1e-19
Identities = 87/100 (87%)
Strand = Plus / Plus
Query: 13 tactccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaatttgta 72
|||||||||||| ||||||||| ||||| |||||| ||||||||||| || |||||| ||
Sbjct: 5 tactccctctgttccaaaataactgtcttaactttgtactagctttactataaatttata 64
Query: 73 ctaagcttgagacagttattttgggacagaggaagtacta 112
||||| || ||||| |||||||| ||| |||| |||||||
Sbjct: 65 ctaagtttaagacatttattttgcgacggagggagtacta 104
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 82 agacagttattttgggacagaggaagtacta 112
||||||||||||||| ||||||| |||||||
Sbjct: 32 agacagttattttggaacagagggagtacta 2
>RF00906;MIR1122;AY821694.1/1308-1197 37674:Crithopsis delileana
Length = 112
Score = 95.6 bits (48), Expect = 1e-19
Identities = 63/68 (92%)
Strand = Plus / Minus
Query: 12 atactccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaatttgt 71
|||||||||| |||||||||||||||||||||||| ||||| |||||||||||| ||||
Sbjct: 109 atactccctccatcccaaaataagtgtctcaactttgtactaactttagtacaaagttgt 50
Query: 72 actaagct 79
||||||||
Sbjct: 49 actaagct 42
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 13 tactccctctgtcccaaaataagtgtct 40
||||||||| ||||||||||||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgtct 32
>RF00906;MIR1122;AJ234583.1/157-260 4513:Hordeum vulgare
Length = 104
Score = 91.7 bits (46), Expect = 2e-18
Identities = 89/102 (87%), Gaps = 1/102 (0%)
Strand = Plus / Plus
Query: 12 atactccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaatttgt 71
|||||||||| ||| |||||||||| ||| || ||||||||||||| ||| |||| || |
Sbjct: 4 atactccctccgtctcaaaataagtttcttaattttatactagctt-agtgcaaagttat 62
Query: 72 actaagcttgagacagttattttgggacagaggaagtactaa 113
||||||||||||||| |||||||| ||| |||| ||||||||
Sbjct: 63 actaagcttgagacaattattttgagacggagggagtactaa 104
>RF00906;MIR1122;AF488415.1/78603-78755 4568:Triticum monococcum
Length = 153
Score = 89.7 bits (45), Expect = 8e-18
Identities = 66/73 (90%)
Strand = Plus / Minus
Query: 12 atactccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaatttgt 71
|||||||||| |||||||||||| |||||||| ||| ||||| |||||||||||| ||||
Sbjct: 150 atactccctccgtcccaaaataactgtctcaagtttgtactaactttagtacaaagttgt 91
Query: 72 actaagcttgaga 84
|||||| ||||||
Sbjct: 90 actaaggttgaga 78
Score = 69.9 bits (35), Expect = 7e-12
Identities = 56/63 (88%)
Strand = Plus / Minus
Query: 37 gtctcaactttatactagctttagtacaaatttgtactaagcttgagacagttattttgg 96
||||||||||| ||||| |||||| |||| |||||||||| |||||||| |||||||||
Sbjct: 77 gtctcaactttgtactaaatttagtgcaaagttgtactaaggttgagacacttattttgg 18
Query: 97 gac 99
|||
Sbjct: 17 gac 15
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 78 cttgagacagttattttgggacagaggaagta 109
|||||||||||||||||||||| |||| ||||
Sbjct: 118 cttgagacagttattttgggacggagggagta 149
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 23 gtcccaaaataagtgtctcaac 44
||||||||||||||||||||||
Sbjct: 15 gtcccaaaataagtgtctcaac 36
>RF00906;MIR1122;AY943294.1/62260-62364 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 89.7 bits (45), Expect = 8e-18
Identities = 84/97 (86%)
Strand = Plus / Minus
Query: 13 tactccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaatttgta 72
|||| |||| |||||||||||| |||||||||||| || ||| ||||||||||| |||||
Sbjct: 101 tacttcctccgtcccaaaataactgtctcaactttgtattagatttagtacaaaattgta 42
Query: 73 ctaagcttgagacagttattttgggacagaggaagta 109
||||||| ||||| ||||||||| || |||| ||||
Sbjct: 41 ttaagcttaagacacttattttggaacggagggagta 5
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 79 ttgagacagttattttgggacagaggaagtac 110
||||||||||||||||||||| ||||||||||
Sbjct: 71 ttgagacagttattttgggacggaggaagtac 102
>RF00906;MIR1122;AF521177.1/206122-206018 4513:Hordeum vulgare
Length = 105
Score = 85.7 bits (43), Expect = 1e-16
Identities = 73/83 (87%)
Strand = Plus / Minus
Query: 13 tactccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaatttgta 72
||||||||| || |||||||| |||||||||||| |||||||| ||||||||| |||||
Sbjct: 101 tactccctccgtttcaaaataaatgtctcaactttgtactagctctagtacaaagttgta 42
Query: 73 ctaagcttgagacagttattttg 95
|||||| ||| ||| ||||||||
Sbjct: 41 ctaagcatgaaacaattattttg 19
>RF00906;MIR1122;AK252392.1/1279-1175 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 79.8 bits (40), Expect = 7e-15
Identities = 79/92 (85%)
Strand = Plus / Minus
Query: 13 tactccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaatttgta 72
||||||||| ||||||||||| ||||| |||||| |||||||| ||| ||| |||||
Sbjct: 101 tactccctccgtcccaaaatatctgtcttaactttgtactagctcatgtataaaattgta 42
Query: 73 ctaagcttgagacagttattttgggacagagg 104
|||||||| ||||| |||||||||||| ||||
Sbjct: 41 ctaagcttaagacacttattttgggacggagg 10
>RF00906;MIR1122;DQ175992.1/50-154 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 75.8 bits (38), Expect = 1e-13
Identities = 71/82 (86%)
Strand = Plus / Minus
Query: 13 tactccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaatttgta 72
||||||||| |||||||||||| ||||| |||||| | |||||| ||||| ||| || ||
Sbjct: 101 tactccctccgtcccaaaataattgtcttaactttgttctagctctagtataaaattata 42
Query: 73 ctaagcttgagacagttatttt 94
|||||||| ||||| |||||||
Sbjct: 41 ctaagcttaagacacttatttt 20
>RF00906;MIR1122;FJ477093.1/40908-41001 4513:Hordeum vulgare
Length = 94
Score = 75.8 bits (38), Expect = 1e-13
Identities = 50/54 (92%)
Strand = Plus / Minus
Query: 13 tactccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaa 66
||||||||| |||||||| |||||| ||||||||||||||| ||||||||||||
Sbjct: 90 tactccctccgtcccaaattaagtgactcaactttatactaactttagtacaaa 37
Score = 67.9 bits (34), Expect = 3e-11
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 12 atactccctctgtcccaaaataagtgtctcaactttatacta 53
|||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 4 atactccctctgtcccaaaataagtgactcaactttgtacta 45
>RF00906;MIR1122;AY663392.1/117099-117203 4565:Triticum aestivum
(bread wheat)
Length = 105
Score = 69.9 bits (35), Expect = 7e-12
Identities = 71/83 (85%)
Strand = Plus / Minus
Query: 12 atactccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaatttgt 71
|||||||||| ||||||||||||||| | || ||| || ||||||||||| ||| || |
Sbjct: 102 atactccctccatcccaaaataagtgtgttaattttgtattagctttagtataaagttat 43
Query: 72 actaagcttgagacagttatttt 94
|||||| |||||||| |||||||
Sbjct: 42 actaagattgagacacttatttt 20
>RF00906;MIR1122;U29095.1/333-439 4565:Triticum aestivum (bread
wheat)
Length = 107
Score = 67.9 bits (34), Expect = 3e-11
Identities = 52/57 (91%), Gaps = 2/57 (3%)
Strand = Plus / Plus
Query: 12 atactccctctgtcccaaaataagtg--tctcaactttatactagctttagtacaaa 66
|||||||||| ||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 4 atactccctccgtcccaaaataagtggatctcaactttatactatttttagtacaaa 60
>RF00906;MIR1122;AB183299.1/312-404 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 61.9 bits (31), Expect = 2e-09
Identities = 50/55 (90%), Gaps = 1/55 (1%)
Strand = Plus / Plus
Query: 55 ctttagtacaaatttgtactaagcttgagacagttattttgggacagaggaagta 109
|||||||| || ||||||||||| |||||||| |||||||||||| |||||||||
Sbjct: 36 ctttagtataactttgtactaag-ttgagacacttattttgggacggaggaagta 89
Score = 60.0 bits (30), Expect = 7e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 15 ctccctctgtcccaaaataagtgtctcaacttta 48
||||||| ||||||||||||||||||||||||||
Sbjct: 7 ctccctccgtcccaaaataagtgtctcaacttta 40
Score = 54.0 bits (27), Expect = 4e-07
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 12 atactccctctgtcccaaaataagtgtctcaactt 46
||||| |||| ||||||||||||||||||||||||
Sbjct: 90 atacttcctccgtcccaaaataagtgtctcaactt 56
Score = 48.1 bits (24), Expect = 3e-05
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 57 ttagtacaaatttgtactaagcttgagacagttattttgggacagagg 104
|||||||||| || |||||| |||||||| |||||||||||| ||||
Sbjct: 57 ttagtacaaagttatactaaagttgagacacttattttgggacggagg 10
>RF00906;MIR1122;AK252095.1/1820-1925 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 106
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 12 atactccctctgtcccaaaataagtgtctcaactttata 50
|||||||||||||||||||||||||||| ||| ||||||
Sbjct: 103 atactccctctgtcccaaaataagtgtcacaaatttata 65
>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
Length = 132
Score = 61.9 bits (31), Expect = 2e-09
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 12 atactccctctgtcccaaaataagtgtctcaactttatactagcttt 58
|||||||||| ||||||||||||||| ||||||||| ||||| ||||
Sbjct: 4 atactccctccgtcccaaaataagtgactcaactttgtactaacttt 50
Score = 50.1 bits (25), Expect = 7e-06
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 24 tcccaaaataagtgtctcaactttatactagctttag 60
|||||||||||||| ||||||||| ||||| ||||||
Sbjct: 117 tcccaaaataagtgactcaactttgtactaactttag 81
>RF00906;MIR1122;AF521177.1/81577-81474 4513:Hordeum vulgare
Length = 104
Score = 60.0 bits (30), Expect = 7e-09
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 12 atactccctctgtcccaaaataagtgtctcaactttatacta 53
|||||||||| ||||||||||||||| ||||||||| |||||
Sbjct: 101 atactccctccgtcccaaaataagtgactcaactttgtacta 60
>RF00906;MIR1122;FJ374624.1/2920-2820 4572:Triticum urartu
Length = 101
Score = 58.0 bits (29), Expect = 3e-08
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 13 tactccctctgtcccaaaataagtgtctcaactttatacta 53
||||| ||||||||||||||||||| ||||||||| |||||
Sbjct: 97 tactcgctctgtcccaaaataagtgactcaactttgtacta 57
>RF00906;MIR1122;FJ491378.1/4581-4466 4550:Secale cereale (rye)
Length = 116
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 12 atactccctctgtcccaaaataagtgtctcaa 43
|||||||||||||||||||||||||| |||||
Sbjct: 4 atactccctctgtcccaaaataagtgactcaa 35
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 12 atactccctctgtcccaaaataagtgtctcaa 43
|||||||||| ||||||||||||||| |||||
Sbjct: 113 atactccctccgtcccaaaataagtgactcaa 82
>RF00906;MIR1122;AK250735.1/291-376 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 86
Score = 52.0 bits (26), Expect = 2e-06
Identities = 39/42 (92%), Gaps = 1/42 (2%)
Strand = Plus / Plus
Query: 13 tactccctctgtcccaaaataagtgtct-caactttatacta 53
||||||||| |||||||||||||||||| ||||||| |||||
Sbjct: 5 tactccctccgtcccaaaataagtgtctccaactttgtacta 46
>RF00906;MIR1122;DQ267106.1/62901-62968 4572:Triticum urartu
Length = 68
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 13 tactccctctgtcccaaaataagtg 37
|||||||||||||||||||||||||
Sbjct: 64 tactccctctgtcccaaaataagtg 40
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 12 atactccctctgtcccaaaataagtg 37
|||||||||| |||||||||||||||
Sbjct: 4 atactccctccgtcccaaaataagtg 29
>RF00906;MIR1122;AJ507395.1/7785-7899 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 115
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 16 tccctctgtcccaaaataagtgtctcaa 43
|||||||||||||||||||||| |||||
Sbjct: 8 tccctctgtcccaaaataagtgactcaa 35
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 13 tactccctctgtcccaaaataagtgtctcaa 43
||||||||| ||||||||||||||| |||||
Sbjct: 111 tactccctccgtcccaaaataagtgactcaa 81
>RF00906;MIR1122;EU282251.1/1314-1209 52152:Elymus repens
Length = 106
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 13 tactccctctgtcccaaaataagtgtctcaacttta 48
||||||||| ||||||||||||||||| ||| ||||
Sbjct: 5 tactccctccgtcccaaaataagtgtcgcaaattta 40
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 12 atactccctctgtcccaaaataagtgtc 39
|||||||||| |||||||||||||||||
Sbjct: 103 atactccctccgtcccaaaataagtgtc 76
>RF00906;MIR1122;AACV01004030.1/351-512 39947:Oryza sativa
Japonica Group
Length = 162
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 agatactccctctgtcccaaaata 33
||||||||||||||||||||||||
Sbjct: 2 agatactccctctgtcccaaaata 25
>RF00906;MIR1122;ABXC01004408.1/208298-208202 4558:Sorghum bicolor
(sorghum)
Length = 97
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 tactccctctgtcccaaaataagtgtc 39
|||||||||||||||||||| ||||||
Sbjct: 5 tactccctctgtcccaaaatgagtgtc 31
>RF00906;MIR1122;AF488415.1/128685-128592 4568:Triticum monococcum
Length = 94
Score = 46.1 bits (23), Expect = 1e-04
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 12 atactccctctgtcccaaaataagtgtctcaactttatactagctttagtacaaa 66
|||||||||| | |||||||| || ||||||||| ||||| ||||||||||||
Sbjct: 91 atactccctccattccaaaatagatgactcaactttgtactaactttagtacaaa 37
>RF00906;MIR1122;AB182945.1/6773-6906 4565:Triticum aestivum (bread
wheat)
Length = 134
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 12 atactccctctgtcccaaaataagtgtctca 42
|||||||||| || |||||||||||||||||
Sbjct: 131 atactccctccgttccaaaataagtgtctca 101
>RF00906;MIR1122;EU626553.1/80133-80237 4572:Triticum urartu
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 13 tactccctctgtcccaaaataagtgtctcaactttatactagcttta 59
||||||||| || |||||||| || ||||||||||||||| |||||
Sbjct: 5 tactccctccgttccaaaatagatgactcaactttatactaacttta 51
>RF00906;MIR1122;EU282656.1/645-750 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 106
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 13 tactccctctgtcccaaaataagtgtc 39
||||||||| |||||||||||||||||
Sbjct: 102 tactccctcggtcccaaaataagtgtc 76
>RF00906;MIR1122;AAAA02021906.1/16695-16573 39946:Oryza sativa
Indica Group
Length = 123
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 12 atactccctctgtcccaaaataa 34
|||||||||||||||||||||||
Sbjct: 120 atactccctctgtcccaaaataa 98
>RF01058;MIR806;AP008208.1/6823788-6823544 39947:Oryza sativa
Japonica Group
Length = 245
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 12 atactccctctgtcccaaaataagtg 37
|||||||||| |||||||||||||||
Sbjct: 245 atactccctccgtcccaaaataagtg 220
>RF01058;MIR806;AL731615.4/103346-103100 39947:Oryza sativa
Japonica Group
Length = 247
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 13 tactccctctgtcccaaaataagtgt 38
||||||||| ||||||||||||||||
Sbjct: 2 tactccctccgtcccaaaataagtgt 27
>RF01058;MIR806;AACV01008707.1/8338-8098 39947:Oryza sativa
Japonica Group
Length = 241
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 atactccctctgtcccaaaata 33
||||||||||||||||||||||
Sbjct: 1 atactccctctgtcccaaaata 22
>RF01058;MIR806;AACV01025022.1/35011-35254 39947:Oryza sativa
Japonica Group
Length = 244
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 12 atactccctctgtcccaaaataagtg 37
|||||||||| |||||||||||||||
Sbjct: 1 atactccctccgtcccaaaataagtg 26
>RF01058;MIR806;AC136971.3/14967-14725 39947:Oryza sativa Japonica
Group
Length = 243
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 12 atactccctctgtcccaaaata 33
||||||||||||||||||||||
Sbjct: 243 atactccctctgtcccaaaata 222
>RF01058;MIR806;AAAA02004537.1/25464-25706 39946:Oryza sativa
Indica Group
Length = 243
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 12 atactccctctgtcccaaaataagtg 37
|||||||||| |||||||||||||||
Sbjct: 1 atactccctccgtcccaaaataagtg 26
>RF01058;MIR806;AAAA02009876.1/3121-2881 39946:Oryza sativa Indica
Group
Length = 241
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 12 atactccctctgtcccaaaataagtg 37
|||||||||| |||||||||||||||
Sbjct: 241 atactccctccgtcccaaaataagtg 216
>RF00906;MIR1122;AP008214.1/14410723-14410632 39947:Oryza sativa
Japonica Group
Length = 92
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 12 atactccctctgtcccaaaataagtg 37
|||||||||| |||||||||||||||
Sbjct: 4 atactccctccgtcccaaaataagtg 29
>RF00906;MIR1122;AP008212.1/3593579-3593709 39947:Oryza sativa
Japonica Group
Length = 131
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 12 atactccctctgtcccaaaata 33
||||||||||||||||||||||
Sbjct: 128 atactccctctgtcccaaaata 107
>RF00906;MIR1122;AACV01009606.1/13757-13637 39947:Oryza sativa
Japonica Group
Length = 121
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 13 tactccctctgtcccaaaataa 34
||||||||||||||||||||||
Sbjct: 117 tactccctctgtcccaaaataa 96
>RF00906;MIR1122;AAAA02008325.1/22579-22685 39946:Oryza sativa
Indica Group
Length = 107
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 12 atactccctctgtcccaaaataagtg 37
|||||||||||||||||| |||||||
Sbjct: 4 atactccctctgtcccaatataagtg 29
>RF00906;MIR1122;AP004740.3/39878-39774 39947:Oryza sativa Japonica
Group
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 88 ttattttgggacagaggaagta 109
||||||||||||||||||||||
Sbjct: 26 ttattttgggacagaggaagta 5
>RF00906;MIR1122;AACV01015822.1/5399-5292 39947:Oryza sativa
Japonica Group
Length = 108
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 atactccctctgtcccaaaata 33
||||||||||||||||||||||
Sbjct: 4 atactccctctgtcccaaaata 25