miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU593539.1/914-1018 4513:Hordeum vulgare
Length = 105
Score = 113 bits (57), Expect = 5e-25
Identities = 87/97 (89%)
Strand = Plus / Minus
Query: 9 tactccctctgtcccaaaataactgtctcaactttatactaaaactagtataaagttgta 68
||||||||| ||||||||||||||||||||||||||||||| | |||||||||| || ||
Sbjct: 101 tactccctccgtcccaaaataactgtctcaactttatactagatctagtataaatttata 42
Query: 69 ttaagtttaagatacttatttttggacggagggagta 105
|||| |||||| | ||||||| ||||||||||||||
Sbjct: 41 ctaagcttaagacagttattttgggacggagggagta 5
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 9 tactccctctgtcccaaaataactgtct 36
||||||||| ||||||||||||||||||
Sbjct: 5 tactccctccgtcccaaaataactgtct 32
>RF00906;MIR1122;DQ445238.1/5626-5730 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 105 bits (53), Expect = 1e-22
Identities = 86/97 (88%)
Strand = Plus / Minus
Query: 9 tactccctctgtcccaaaataactgtctcaactttatactaaaactagtataaagttgta 68
||||||||| ||||||||||||||||||||||||||||||| | ||| |||||| || ||
Sbjct: 101 tactccctccgtcccaaaataactgtctcaactttatactagatctaatataaatttata 42
Query: 69 ttaagtttaagatacttatttttggacggagggagta 105
|||| |||||| | ||||||| ||||||||||||||
Sbjct: 41 ctaagcttaagacagttattttgggacggagggagta 5
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 9 tactccctctgtcccaaaataactgtct 36
||||||||| ||||||||||||||||||
Sbjct: 5 tactccctccgtcccaaaataactgtct 32
>RF00906;MIR1122;AJ234485.1/114-218 4513:Hordeum vulgare
Length = 105
Score = 101 bits (51), Expect = 2e-21
Identities = 90/103 (87%)
Strand = Plus / Minus
Query: 6 tactactccctctgtcccaaaataactgtctcaactttatactaaaactagtataaagtt 65
|||||||||||||||| |||||||||||||||||| || ||||| |||||| ||| ||
Sbjct: 104 tactactccctctgtctcaaaataactgtctcaacattgtactagctctagtacaaaatt 45
Query: 66 gtattaagtttaagatacttatttttggacggagggagtacta 108
||| |||| |||||| ||||||||| ||||||||||||||||
Sbjct: 44 gtactaagattaagacacttattttgagacggagggagtacta 2
>RF00906;MIR1122;EU282771.1/632-528 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 99.6 bits (50), Expect = 7e-21
Identities = 89/102 (87%)
Strand = Plus / Minus
Query: 6 tactactccctctgtcccaaaataactgtctcaactttatactaaaactagtataaagtt 65
|||||||||||| ||| |||||||| | ||||||||||| |||| |||||||||||||
Sbjct: 104 tactactccctccgtctcaaaataagtatctcaactttacactagctctagtataaagtt 45
Query: 66 gtattaagtttaagatacttatttttggacggagggagtact 107
||| ||||||| ||| | ||||||| ||||||||||||||||
Sbjct: 44 gtactaagtttgagaaagttattttgggacggagggagtact 3
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 9 tactccctctgtcccaaaataactgtctcaa 39
||||||||| |||||||||||||| ||||||
Sbjct: 5 tactccctccgtcccaaaataactttctcaa 35
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 95.6 bits (48), Expect = 1e-19
Identities = 87/100 (87%)
Strand = Plus / Minus
Query: 6 tactactccctctgtcccaaaataactgtctcaactttatactaaaactagtataaagtt 65
|||||||||||| |||||||||||| |||||||||||| || ||| ||||| ||||||
Sbjct: 104 tactactccctccgtcccaaaataaatgtctcaactttgtattaactttagtacaaagtt 45
Query: 66 gtattaagtttaagatacttatttttggacggagggagta 105
||| |||| || ||| ||||||||| ||||||||||||||
Sbjct: 44 gtactaagcttgagacacttattttgggacggagggagta 5
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 9 tactccctctgtcccaaaataactgtctcaa 39
||||||||| |||||||||||| ||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgtctcaa 35
>RF00906;MIR1122;AK249560.1/988-1092 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 91.7 bits (46), Expect = 2e-18
Identities = 85/98 (86%)
Strand = Plus / Plus
Query: 9 tactccctctgtcccaaaataactgtctcaactttatactaaaactagtataaagttgta 68
|||||| || |||||||||||| |||||||||||||||||| ||||| ||| |||||
Sbjct: 5 tactccatccgtcccaaaataagtgtctcaactttatactagctatagtacaaacttgta 64
Query: 69 ttaagtttaagatacttatttttggacggagggagtac 106
|||||||| ||| | ||||||| |||||||||||||||
Sbjct: 65 ttaagtttgagacagttattttgggacggagggagtac 102
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 9 tactccctctgtcccaaaataactgtctcaa 39
||||||||| |||||||||||||||||||||
Sbjct: 101 tactccctccgtcccaaaataactgtctcaa 71
>RF00906;MIR1122;EU282768.1/632-528 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 91.7 bits (46), Expect = 2e-18
Identities = 88/102 (86%)
Strand = Plus / Minus
Query: 6 tactactccctctgtcccaaaataactgtctcaactttatactaaaactagtataaagtt 65
|||||||||||| ||| |||||||| | ||||| ||||| |||| |||||||||||||
Sbjct: 104 tactactccctccgtctcaaaataagtatctcagctttacactagctctagtataaagtt 45
Query: 66 gtattaagtttaagatacttatttttggacggagggagtact 107
||| ||||||| ||| | ||||||| ||||||||||||||||
Sbjct: 44 gtactaagtttgagaaagttattttgggacggagggagtact 3
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 9 tactccctctgtcccaaaataactgtctcaa 39
||||||||| |||||||||||||| ||||||
Sbjct: 5 tactccctccgtcccaaaataactttctcaa 35
>RF00906;MIR1122;AJ400714.1/3663-3767 4565:Triticum aestivum (bread
wheat)
Length = 105
Score = 89.7 bits (45), Expect = 7e-18
Identities = 84/97 (86%)
Strand = Plus / Plus
Query: 9 tactccctctgtcccaaaataactgtctcaactttatactaaaactagtataaagttgta 68
|||||| || |||||||||||| |||||||| |||| ||||| |||||| |||||||||
Sbjct: 5 tactccttccgtcccaaaataagtgtctcaattttacactaactctagtacaaagttgta 64
Query: 69 ttaagtttaagatacttatttttggacggagggagta 105
|||| || ||| ||||||||| ||||||||||||||
Sbjct: 65 ctaaggttgagacacttattttgggacggagggagta 101
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 9 tactccctctgtcccaaaataactgtctcaac 40
||||||||| |||||||||||| |||||||||
Sbjct: 101 tactccctccgtcccaaaataagtgtctcaac 70
>RF00906;MIR1122;FJ184990.1/3303-3406 4565:Triticum aestivum (bread
wheat)
Length = 104
Score = 89.7 bits (45), Expect = 7e-18
Identities = 85/97 (87%), Gaps = 1/97 (1%)
Strand = Plus / Minus
Query: 9 tactccctctgtcccaaaataactgtctcaactttatactaaaactagtataaagttgta 68
||||||||| |||||||||||| ||||||| |||| |||||| |||||||||| |||||
Sbjct: 100 tactccctccgtcccaaaataagtgtctca-ctttgtactaactctagtataaaattgta 42
Query: 69 ttaagtttaagatacttatttttggacggagggagta 105
|||| || ||| ||||||||| ||||||||||||||
Sbjct: 41 ctaaggttgagacacttattttgggacggagggagta 5
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 9 tactccctctgtcccaaaataactgtctcaac 40
||||||||| |||||||||||| |||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgtctcaac 36
>RF00906;MIR1122;AY943294.1/62260-62364 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 89.7 bits (45), Expect = 7e-18
Identities = 84/97 (86%)
Strand = Plus / Minus
Query: 9 tactccctctgtcccaaaataactgtctcaactttatactaaaactagtataaagttgta 68
|||| |||| ||||||||||||||||||||||||| || || | ||||| ||| |||||
Sbjct: 101 tacttcctccgtcccaaaataactgtctcaactttgtattagatttagtacaaaattgta 42
Query: 69 ttaagtttaagatacttatttttggacggagggagta 105
||||| |||||| ||||||||| | ||||||||||||
Sbjct: 41 ttaagcttaagacacttattttggaacggagggagta 5
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 87.7 bits (44), Expect = 3e-17
Identities = 86/100 (86%)
Strand = Plus / Minus
Query: 6 tactactccctctgtcccaaaataactgtctcaactttatactaaaactagtataaagtt 65
|||||||||||| |||||||||||| |||||||||||| || ||| ||||| || |||
Sbjct: 104 tactactccctccgtcccaaaataaatgtctcaactttgtattaactttagtacaaggtt 45
Query: 66 gtattaagtttaagatacttatttttggacggagggagta 105
||| |||| || ||| ||||||||| ||||||||||||||
Sbjct: 44 gtactaagcttgagacacttattttgggacggagggagta 5
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 9 tactccctctgtcccaaaataactgtctcaa 39
||||||||| |||||||||||| ||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgtctcaa 35
>RF00906;MIR1122;AJ249141.1/1014-910 4513:Hordeum vulgare
Length = 105
Score = 83.8 bits (42), Expect = 4e-16
Identities = 81/94 (86%)
Strand = Plus / Minus
Query: 9 tactccctctgtcccaaaataactgtctcaactttatactaaaactagtataaagttgta 68
||||||||| ||| ||||||||||||||||||||| || || |||||| |||||||||
Sbjct: 101 tactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagttgta 42
Query: 69 ttaagtttaagatacttatttttggacggaggga 102
|||| |||||| ||||||||| |||| ||||||
Sbjct: 41 ctaagcttaagacacttattttaggaccgaggga 8
>RF00906;MIR1122;AK249748.1/2677-2573 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 81.8 bits (41), Expect = 2e-15
Identities = 86/101 (85%)
Strand = Plus / Plus
Query: 9 tactccctctgtcccaaaataactgtctcaactttatactaaaactagtataaagttgta 68
|||||||||||| ||||||||||||||| |||||| ||||| || |||||| || ||
Sbjct: 5 tactccctctgttccaaaataactgtcttaactttgtactagctttactataaatttata 64
Query: 69 ttaagtttaagatacttatttttggacggagggagtactag 109
||||||||||| | ||||||| |||||||||||||||||
Sbjct: 65 ctaagtttaagacatttattttgcgacggagggagtactag 105
>RF00906;MIR1122;AY133251.1/901-1005 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 81.8 bits (41), Expect = 2e-15
Identities = 83/97 (85%)
Strand = Plus / Minus
Query: 9 tactccctctgtcccaaaataactgtctcaactttatactaaaactagtataaagttgta 68
||||||||| ||||||||||||||||||||||||| ||||| |||||| ||| |||||
Sbjct: 101 tactccctccgtcccaaaataactgtctcaactttgtactagctctagtacaaaattgta 42
Query: 69 ttaagtttaagatacttatttttggacggagggagta 105
|| | | |||| ||||||||| | ||||||||||||
Sbjct: 41 ctacgctcaagacacttattttggaacggagggagta 5
>RF00906;MIR1122;FJ477093.1/40908-41001 4513:Hordeum vulgare
Length = 94
Score = 75.8 bits (38), Expect = 1e-13
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 9 tactccctctgtcccaaaataactgtctcaactttatactaaaactagtataaagttg 66
|||||||||||||||||||||| || ||||||||| ||||||| |||||||||||||
Sbjct: 5 tactccctctgtcccaaaataagtgactcaactttgtactaaagttagtataaagttg 62
Score = 52.0 bits (26), Expect = 2e-06
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 9 tactccctctgtcccaaaataactgtctcaactttatactaa 50
||||||||| |||||||| ||| || ||||||||||||||||
Sbjct: 90 tactccctccgtcccaaattaagtgactcaactttatactaa 49
>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
Length = 105
Score = 75.8 bits (38), Expect = 1e-13
Identities = 83/98 (84%)
Strand = Plus / Minus
Query: 9 tactccctctgtcccaaaataactgtctcaactttatactaaaactagtataaagttgta 68
||||||||| |||||||||||| ||||| |||||| |||||| ||||| |||||||||
Sbjct: 101 tactccctccgtcccaaaataagtgtcttaactttgtactaactttagtacaaagttgta 42
Query: 69 ttaagtttaagatacttatttttggacggagggagtac 106
|| | || ||| ||||||||| ||||||||||||||
Sbjct: 41 ctaggcttgagacacttattttgagacggagggagtac 4
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 75 ttaagatacttatttttggacggagggagtac 106
|||||| ||||||||| |||||||||||||||
Sbjct: 71 ttaagacacttattttgggacggagggagtac 102
>RF00906;MIR1122;DQ871219.1/106890-106994 85692:Triticum turgidum
subsp. dicoccoides
Length = 105
Score = 73.8 bits (37), Expect = 4e-13
Identities = 82/97 (84%)
Strand = Plus / Minus
Query: 9 tactccctctgtcccaaaataactgtctcaactttatactaaaactagtataaagttgta 68
||||||||| ||||||||||| |||||||||||| ||||| |||||| ||| || ||
Sbjct: 101 tactccctccatcccaaaataagtgtctcaactttgtactatctctagtacaaattttta 42
Query: 69 ttaagtttaagatacttatttttggacggagggagta 105
|||| | |||| ||||||||| ||||||||||||||
Sbjct: 41 ctaagctcaagacacttattttgggacggagggagta 5
>RF00906;MIR1122;AK252392.1/1279-1175 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 73.8 bits (37), Expect = 4e-13
Identities = 79/93 (84%)
Strand = Plus / Minus
Query: 9 tactccctctgtcccaaaataactgtctcaactttatactaaaactagtataaagttgta 68
||||||||| ||||||||||| |||||| |||||| ||||| | ||||||| |||||
Sbjct: 101 tactccctccgtcccaaaatatctgtcttaactttgtactagctcatgtataaaattgta 42
Query: 69 ttaagtttaagatacttatttttggacggaggg 101
|||| |||||| ||||||||| ||||||||||
Sbjct: 41 ctaagcttaagacacttattttgggacggaggg 9
>RF00906;MIR1122;DQ445236.1/13423-13319 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 73.8 bits (37), Expect = 4e-13
Identities = 82/97 (84%)
Strand = Plus / Plus
Query: 9 tactccctctgtcccaaaataactgtctcaactttatactaaaactagtataaagttgta 68
||||||||| || ||||||||| |||||||| ||| ||||| |||||| |||||||||
Sbjct: 5 tactccctccgttccaaaataagtgtctcaaatttgtactagctctagtacaaagttgta 64
Query: 69 ttaagtttaagatacttatttttggacggagggagta 105
|||| || ||||| ||||||| | ||||||||||||
Sbjct: 65 ctaagcttgagatagttattttggaacggagggagta 101
>RF00906;MIR1122;EU282770.1/593-711 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 119
Score = 67.9 bits (34), Expect = 3e-11
Identities = 76/90 (84%)
Strand = Plus / Plus
Query: 6 tactactccctctgtcccaaaataactgtctcaactttatactaaaactagtataaagtt 65
|||||||||||| ||| ||||||| ||||||||||||| ||| |||||||||||||
Sbjct: 2 tactactccctccgtctcaaaataggtgtctcaactttaccctagctctagtataaagtt 61
Query: 66 gtattaagtttaagatacttatttttggac 95
||| ||||||| ||| | ||||||| ||||
Sbjct: 62 gtactaagtttgagaaagttattttgggac 91
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 9 tactccctctgtcccaaaataactgtc 35
||||||||| |||||||||||||||||
Sbjct: 115 tactccctccgtcccaaaataactgtc 89
>RF00906;MIR1122;AF488415.1/78603-78755 4568:Triticum monococcum
Length = 153
Score = 65.9 bits (33), Expect = 1e-10
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 9 tactccctctgtcccaaaataactgtctcaactttatactaaaactagtataaagttgta 68
||||||||| ||||||||||||||||||||| ||| |||||| ||||| |||||||||
Sbjct: 149 tactccctccgtcccaaaataactgtctcaagtttgtactaactttagtacaaagttgta 90
Query: 69 ttaag 73
||||
Sbjct: 89 ctaag 85
Score = 58.0 bits (29), Expect = 3e-08
Identities = 65/77 (84%)
Strand = Plus / Minus
Query: 33 gtctcaactttatactaaaactagtataaagttgtattaagtttaagatacttatttttg 92
||||||||||| ||||||| |||| ||||||||| |||| || ||| ||||||||| |
Sbjct: 77 gtctcaactttgtactaaatttagtgcaaagttgtactaaggttgagacacttattttgg 18
Query: 93 gacggagggagtactag 109
|||| |||||| |||||
Sbjct: 17 gacgaagggagaactag 1
>RF00906;MIR1122;AF474373.1/50497-50394 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 104
Score = 65.9 bits (33), Expect = 1e-10
Identities = 85/101 (84%), Gaps = 1/101 (0%)
Strand = Plus / Minus
Query: 5 gtactactccctctgtcccaaaataactgtctcaactttatactaaaactagtataaagt 64
||||||||||||| ||||||||||| |||||||||||| ||||| |||||| |||||
Sbjct: 104 gtactactccctcc-tcccaaaataagtgtctcaactttgtactagttctagtacaaagt 46
Query: 65 tgtattaagtttaagatacttatttttggacggagggagta 105
|||| || | || ||| | ||||||| |||||||| |||||
Sbjct: 45 tgtactaggcttgagacagttattttgggacggagtgagta 5
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 9 tactccctctgtcccaaaataactgtctcaa 39
||||| ||| |||||||||||||||||||||
Sbjct: 5 tactcactccgtcccaaaataactgtctcaa 35
>RF00906;MIR1122;DQ995510.1/1615-1718 4513:Hordeum vulgare
Length = 104
Score = 65.9 bits (33), Expect = 1e-10
Identities = 82/97 (84%), Gaps = 1/97 (1%)
Strand = Plus / Minus
Query: 9 tactccctctgtcccaaaataactgtctcaactttatactaaaactagtataaagttgta 68
||||||||| |||||||||||||||||||||||| ||||| |||||| |||||||||
Sbjct: 100 tactccctccatcccaaaataactgtctcaactttgtactagctctagtacaaagttgta 41
Query: 69 ttaagtttaagatacttatttttggacggagggagta 105
||| || ||| | ||||||| |||||||||||||
Sbjct: 40 caaag-ttgagacagttattttgagacggagggagta 5
Score = 54.0 bits (27), Expect = 4e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 9 tactccctctgtcccaaaataactgtctcaacttt 43
||||||||| ||| |||||||||||||||||||||
Sbjct: 5 tactccctccgtctcaaaataactgtctcaacttt 39
>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 65.9 bits (33), Expect = 1e-10
Identities = 81/97 (83%)
Strand = Plus / Minus
Query: 9 tactccctctgtcccaaaataactgtctcaactttatactaaaactagtataaagttgta 68
||||||||| |||||||||||| |||||||||||| ||||| ||||| ||| || |
Sbjct: 101 tactccctccgtcccaaaataagtgtctcaactttgtactagctgtagtacaaaattaca 42
Query: 69 ttaagtttaagatacttatttttggacggagggagta 105
|||| || ||| ||||||||| ||||||||||||||
Sbjct: 41 ctaagcttgagacacttattttgggacggagggagta 5
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 9 tactccctctgtcccaaaataactgtctcaa 39
||||||||| |||||||||||| ||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgtctcaa 35
>RF00906;MIR1122;DQ175992.1/50-154 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 61.9 bits (31), Expect = 2e-09
Identities = 70/83 (84%)
Strand = Plus / Minus
Query: 8 ctactccctctgtcccaaaataactgtctcaactttatactaaaactagtataaagttgt 67
|||||||||| |||||||||||| ||||| |||||| | ||| |||||||||| || |
Sbjct: 102 ctactccctccgtcccaaaataattgtcttaactttgttctagctctagtataaaattat 43
Query: 68 attaagtttaagatacttatttt 90
| |||| |||||| |||||||||
Sbjct: 42 actaagcttaagacacttatttt 20
>RF00906;MIR1122;X83518.1/7301-7197 4513:Hordeum vulgare
Length = 105
Score = 58.0 bits (29), Expect = 3e-08
Identities = 80/97 (82%)
Strand = Plus / Minus
Query: 9 tactccctctgtcccaaaataactgtctcaactttatactaaaactagtataaagttgta 68
|||||||||| | ||||||||| |||||||||||| ||||| ||| || |||||||||
Sbjct: 101 tactccctctcttccaaaataagtgtctcaactttgtactagctctactacaaagttgta 42
Query: 69 ttaagtttaagatacttatttttggacggagggagta 105
|||| || ||| | ||||||| || ||||||||||
Sbjct: 41 ctaagcttgagacagttattttgagatggagggagta 5
>RF00906;MIR1122;AY821694.1/1308-1197 37674:Crithopsis delileana
Length = 112
Score = 58.0 bits (29), Expect = 3e-08
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 9 tactccctctgtcccaaaataactgtctcaactttatactaaaactagtataaagttgta 68
||||||||| ||||||||||| |||||||||||| |||||| ||||| |||||||||
Sbjct: 108 tactccctccatcccaaaataagtgtctcaactttgtactaactttagtacaaagttgta 49
Query: 69 ttaag 73
||||
Sbjct: 48 ctaag 44
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 6 tactactccctctgtcccaaaataactgtct 36
|||||||||||| |||||||||||| |||||
Sbjct: 2 tactactccctccgtcccaaaataagtgtct 32
>RF00906;MIR1122;DQ901436.1/1229-1333 4565:Triticum aestivum
(bread wheat)
Length = 105
Score = 54.0 bits (27), Expect = 4e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 11 ctccctctgtcccaaaataactgtctcaactttatacta 49
||||||| |||||||||||| |||||||||||| |||||
Sbjct: 7 ctccctccgtcccaaaataagtgtctcaactttgtacta 45
>RF00906;MIR1122;AF521177.1/81577-81474 4513:Hordeum vulgare
Length = 104
Score = 54.0 bits (27), Expect = 4e-07
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 9 tactccctctgtcccaaaataactgtctcaactttatactaaa 51
||||||||| |||||||||||| || ||||||||| |||||||
Sbjct: 100 tactccctccgtcccaaaataagtgactcaactttgtactaaa 58
>RF00906;MIR1122;FJ374624.1/2920-2820 4572:Triticum urartu
Length = 101
Score = 52.0 bits (26), Expect = 2e-06
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 9 tactccctctgtcccaaaataactgtctcaactttatactaa 50
||||| |||||||||||||||| || ||||||||| ||||||
Sbjct: 97 tactcgctctgtcccaaaataagtgactcaactttgtactaa 56
>RF00906;MIR1122;AB183299.1/312-404 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 11 ctccctctgtcccaaaataactgtctcaacttta 44
||||||| |||||||||||| |||||||||||||
Sbjct: 7 ctccctccgtcccaaaataagtgtctcaacttta 40
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 9 tactccctctgtcccaaaataactgtctcaactt 42
|||| |||| |||||||||||| |||||||||||
Sbjct: 89 tacttcctccgtcccaaaataagtgtctcaactt 56
>RF00906;MIR1122;AK252095.1/1820-1925 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 106
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 9 tactccctctgtcccaaaataactgtctcaactttata 46
|||||||||||||||||||||| |||| ||| ||||||
Sbjct: 102 tactccctctgtcccaaaataagtgtcacaaatttata 65
>RF00906;MIR1122;AY268139.1/69673-69778 4513:Hordeum vulgare
Length = 106
Score = 52.0 bits (26), Expect = 2e-06
Identities = 81/98 (82%), Gaps = 1/98 (1%)
Strand = Plus / Minus
Query: 9 tactccctctgtcccaaaataactgtctcaactttatactaaaactagtataaagttgta 68
|||| |||| ||| |||||||||||||| ||||||||| ||| |||||||| |||||
Sbjct: 102 tacttcctccgtctcaaaataactgtcttaactttatattaatttcagtataaaattgta 43
Query: 69 -ttaagtttaagatacttatttttggacggagggagta 105
|||||||||| | | ||||||| ||||||||||||
Sbjct: 42 tttaagtttaaaacagttattttgaaacggagggagta 5
>RF00906;MIR1122;AF521177.1/206122-206018 4513:Hordeum vulgare
Length = 105
Score = 52.0 bits (26), Expect = 2e-06
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 8 ctactccctctgtcccaaaataactgtctcaactttatactaaaactagtataaagttgt 67
|||||||||| || |||||||| |||||||||||| ||||| |||||| ||||||||
Sbjct: 102 ctactccctccgtttcaaaataaatgtctcaactttgtactagctctagtacaaagttgt 43
Query: 68 attaag 73
| ||||
Sbjct: 42 actaag 37
>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
Length = 132
Score = 52.0 bits (26), Expect = 2e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 9 tactccctctgtcccaaaataactgtctcaactttatactaa 50
||||||||| |||||||||||| || ||||||||| ||||||
Sbjct: 5 tactccctccgtcccaaaataagtgactcaactttgtactaa 46
>RF00906;MIR1122;U29095.1/333-439 4565:Triticum aestivum (bread
wheat)
Length = 107
Score = 48.1 bits (24), Expect = 2e-05
Identities = 39/43 (90%), Gaps = 2/43 (4%)
Strand = Plus / Plus
Query: 9 tactccctctgtcccaaaataactg--tctcaactttatacta 49
||||||||| |||||||||||| || ||||||||||||||||
Sbjct: 5 tactccctccgtcccaaaataagtggatctcaactttatacta 47
>RF00906;MIR1122;AK250735.1/291-376 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 40/44 (90%), Gaps = 1/44 (2%)
Strand = Plus / Plus
Query: 7 actactccctctgtcccaaaataactgtct-caactttatacta 49
||||||||||| |||||||||||| ||||| ||||||| |||||
Sbjct: 3 actactccctccgtcccaaaataagtgtctccaactttgtacta 46
>RF00906;MIR1122;AAAA02001246.1/17986-18106 39946:Oryza sativa
Indica Group
Length = 121
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 gtactactccctctgtcccaaaataact 32
|||||||||||||||||| |||||||||
Sbjct: 1 gtactactccctctgtcctaaaataact 28
>RF00906;MIR1122;AL732333.2/10670-10758 4530:Oryza sativa (rice)
Length = 89
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 85 tatttttggacggagggagtacta 108
||||||||||||||||||||||||
Sbjct: 65 tatttttggacggagggagtacta 88
>RF00906;MIR1122;AP008214.1/27846174-27846285 39947:Oryza sativa
Japonica Group
Length = 112
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 tactactccctctgtcccaaaata 29
||||||||||||||||||||||||
Sbjct: 2 tactactccctctgtcccaaaata 25
>RF00906;MIR1122;FJ491378.1/4581-4466 4550:Secale cereale (rye)
Length = 116
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 9 tactccctctgtcccaaaataactgtctcaa 39
|||||||||||||||||||||| || |||||
Sbjct: 5 tactccctctgtcccaaaataagtgactcaa 35
>RF00906;MIR1122;AF181455.1/3108-2994 4513:Hordeum vulgare
Length = 115
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 82 acttatttttggacggagggagtacta 108
||||||||| |||||||||||||||||
Sbjct: 88 acttattttgggacggagggagtacta 114
>RF00906;MIR1122;EU282251.1/1314-1209 52152:Elymus repens
Length = 106
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 6 tactactccctctgtcccaaaataactgtctcaacttta 44
|||||||||||| |||||||||||| |||| ||| ||||
Sbjct: 2 tactactccctccgtcccaaaataagtgtcgcaaattta 40
>RF00906;MIR1122;AACV01009606.1/13757-13637 39947:Oryza sativa
Japonica Group
Length = 121
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 9 tactccctctgtcccaaaataac 31
|||||||||||||||||||||||
Sbjct: 117 tactccctctgtcccaaaataac 95
>RF00906;MIR1122;DQ267106.1/62901-62968 4572:Triticum urartu
Length = 68
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 9 tactccctctgtcccaaaataa 30
||||||||||||||||||||||
Sbjct: 64 tactccctctgtcccaaaataa 43
>RF00906;MIR1122;DQ537336.1/120340-120474 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 84 ttatttttggacggagggagta 105
||||||||||||||||||||||
Sbjct: 110 ttatttttggacggagggagta 131
>RF00906;MIR1122;EU626553.1/80133-80237 4572:Triticum urartu
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 9 tactccctctgtcccaaaataactgtctcaactttatactaa 50
||||||||| || |||||||| || ||||||||||||||||
Sbjct: 5 tactccctccgttccaaaatagatgactcaactttatactaa 46
>RF00906;MIR1122;AP004556.3/98434-98589 39947:Oryza sativa Japonica
Group
Length = 156
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 8 ctactccctctgtcccaaaata 29
||||||||||||||||||||||
Sbjct: 153 ctactccctctgtcccaaaata 132
>RF00906;MIR1122;AL845344.4/40945-41080 4530:Oryza sativa (rice)
Length = 136
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 ctactccctctgtcccaaaata 29
||||||||||||||||||||||
Sbjct: 4 ctactccctctgtcccaaaata 25
>RF00906;MIR1122;AAAA02021906.1/16695-16573 39946:Oryza sativa
Indica Group
Length = 123
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 9 tactccctctgtcccaaaataa 30
||||||||||||||||||||||
Sbjct: 119 tactccctctgtcccaaaataa 98
>RF00906;MIR1122;AP008213.1/24848104-24848218 39947:Oryza sativa
Japonica Group
Length = 115
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 85 tatttttggacggagggagtac 106
||||||||||||||||||||||
Sbjct: 91 tatttttggacggagggagtac 112