miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU593539.1/914-1018 4513:Hordeum vulgare
          Length = 105

 Score =  113 bits (57), Expect = 5e-25
 Identities = 87/97 (89%)
 Strand = Plus / Minus

                                                                       
Query: 9   tactccctctgtcccaaaataactgtctcaactttatactaaaactagtataaagttgta 68
           ||||||||| ||||||||||||||||||||||||||||||| | |||||||||| || ||
Sbjct: 101 tactccctccgtcccaaaataactgtctcaactttatactagatctagtataaatttata 42

                                                
Query: 69  ttaagtttaagatacttatttttggacggagggagta 105
            |||| |||||| | ||||||| ||||||||||||||
Sbjct: 41  ctaagcttaagacagttattttgggacggagggagta 5



 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 9  tactccctctgtcccaaaataactgtct 36
          ||||||||| ||||||||||||||||||
Sbjct: 5  tactccctccgtcccaaaataactgtct 32




>RF00906;MIR1122;DQ445238.1/5626-5730 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 105

 Score =  105 bits (53), Expect = 1e-22
 Identities = 86/97 (88%)
 Strand = Plus / Minus

                                                                       
Query: 9   tactccctctgtcccaaaataactgtctcaactttatactaaaactagtataaagttgta 68
           ||||||||| ||||||||||||||||||||||||||||||| | ||| |||||| || ||
Sbjct: 101 tactccctccgtcccaaaataactgtctcaactttatactagatctaatataaatttata 42

                                                
Query: 69  ttaagtttaagatacttatttttggacggagggagta 105
            |||| |||||| | ||||||| ||||||||||||||
Sbjct: 41  ctaagcttaagacagttattttgggacggagggagta 5



 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 9  tactccctctgtcccaaaataactgtct 36
          ||||||||| ||||||||||||||||||
Sbjct: 5  tactccctccgtcccaaaataactgtct 32




>RF00906;MIR1122;AJ234485.1/114-218 4513:Hordeum vulgare
          Length = 105

 Score =  101 bits (51), Expect = 2e-21
 Identities = 90/103 (87%)
 Strand = Plus / Minus

                                                                       
Query: 6   tactactccctctgtcccaaaataactgtctcaactttatactaaaactagtataaagtt 65
           |||||||||||||||| |||||||||||||||||| || |||||   |||||| ||| ||
Sbjct: 104 tactactccctctgtctcaaaataactgtctcaacattgtactagctctagtacaaaatt 45

                                                      
Query: 66  gtattaagtttaagatacttatttttggacggagggagtacta 108
           ||| |||| |||||| |||||||||  ||||||||||||||||
Sbjct: 44  gtactaagattaagacacttattttgagacggagggagtacta 2




>RF00906;MIR1122;EU282771.1/632-528 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 105

 Score = 99.6 bits (50), Expect = 7e-21
 Identities = 89/102 (87%)
 Strand = Plus / Minus

                                                                       
Query: 6   tactactccctctgtcccaaaataactgtctcaactttatactaaaactagtataaagtt 65
           |||||||||||| ||| |||||||| | ||||||||||| ||||   |||||||||||||
Sbjct: 104 tactactccctccgtctcaaaataagtatctcaactttacactagctctagtataaagtt 45

                                                     
Query: 66  gtattaagtttaagatacttatttttggacggagggagtact 107
           ||| ||||||| ||| | ||||||| ||||||||||||||||
Sbjct: 44  gtactaagtttgagaaagttattttgggacggagggagtact 3



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 9  tactccctctgtcccaaaataactgtctcaa 39
          ||||||||| |||||||||||||| ||||||
Sbjct: 5  tactccctccgtcccaaaataactttctcaa 35




>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
          Length = 105

 Score = 95.6 bits (48), Expect = 1e-19
 Identities = 87/100 (87%)
 Strand = Plus / Minus

                                                                       
Query: 6   tactactccctctgtcccaaaataactgtctcaactttatactaaaactagtataaagtt 65
           |||||||||||| |||||||||||| |||||||||||| || |||   ||||| ||||||
Sbjct: 104 tactactccctccgtcccaaaataaatgtctcaactttgtattaactttagtacaaagtt 45

                                                   
Query: 66  gtattaagtttaagatacttatttttggacggagggagta 105
           ||| |||| || ||| ||||||||| ||||||||||||||
Sbjct: 44  gtactaagcttgagacacttattttgggacggagggagta 5



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 9  tactccctctgtcccaaaataactgtctcaa 39
          ||||||||| |||||||||||| ||||||||
Sbjct: 5  tactccctccgtcccaaaataagtgtctcaa 35




>RF00906;MIR1122;AK249560.1/988-1092 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 105

 Score = 91.7 bits (46), Expect = 2e-18
 Identities = 85/98 (86%)
 Strand = Plus / Plus

                                                                       
Query: 9   tactccctctgtcccaaaataactgtctcaactttatactaaaactagtataaagttgta 68
           |||||| || |||||||||||| ||||||||||||||||||    ||||| ||| |||||
Sbjct: 5   tactccatccgtcccaaaataagtgtctcaactttatactagctatagtacaaacttgta 64

                                                 
Query: 69  ttaagtttaagatacttatttttggacggagggagtac 106
           |||||||| ||| | ||||||| |||||||||||||||
Sbjct: 65  ttaagtttgagacagttattttgggacggagggagtac 102



 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                          
Query: 9   tactccctctgtcccaaaataactgtctcaa 39
           ||||||||| |||||||||||||||||||||
Sbjct: 101 tactccctccgtcccaaaataactgtctcaa 71




>RF00906;MIR1122;EU282768.1/632-528 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 105

 Score = 91.7 bits (46), Expect = 2e-18
 Identities = 88/102 (86%)
 Strand = Plus / Minus

                                                                       
Query: 6   tactactccctctgtcccaaaataactgtctcaactttatactaaaactagtataaagtt 65
           |||||||||||| ||| |||||||| | ||||| ||||| ||||   |||||||||||||
Sbjct: 104 tactactccctccgtctcaaaataagtatctcagctttacactagctctagtataaagtt 45

                                                     
Query: 66  gtattaagtttaagatacttatttttggacggagggagtact 107
           ||| ||||||| ||| | ||||||| ||||||||||||||||
Sbjct: 44  gtactaagtttgagaaagttattttgggacggagggagtact 3



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 9  tactccctctgtcccaaaataactgtctcaa 39
          ||||||||| |||||||||||||| ||||||
Sbjct: 5  tactccctccgtcccaaaataactttctcaa 35




>RF00906;MIR1122;AJ400714.1/3663-3767 4565:Triticum aestivum (bread
           wheat)
          Length = 105

 Score = 89.7 bits (45), Expect = 7e-18
 Identities = 84/97 (86%)
 Strand = Plus / Plus

                                                                       
Query: 9   tactccctctgtcccaaaataactgtctcaactttatactaaaactagtataaagttgta 68
           |||||| || |||||||||||| |||||||| |||| |||||  |||||| |||||||||
Sbjct: 5   tactccttccgtcccaaaataagtgtctcaattttacactaactctagtacaaagttgta 64

                                                
Query: 69  ttaagtttaagatacttatttttggacggagggagta 105
            |||| || ||| ||||||||| ||||||||||||||
Sbjct: 65  ctaaggttgagacacttattttgggacggagggagta 101



 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 9   tactccctctgtcccaaaataactgtctcaac 40
           ||||||||| |||||||||||| |||||||||
Sbjct: 101 tactccctccgtcccaaaataagtgtctcaac 70




>RF00906;MIR1122;FJ184990.1/3303-3406 4565:Triticum aestivum (bread
           wheat)
          Length = 104

 Score = 89.7 bits (45), Expect = 7e-18
 Identities = 85/97 (87%), Gaps = 1/97 (1%)
 Strand = Plus / Minus

                                                                       
Query: 9   tactccctctgtcccaaaataactgtctcaactttatactaaaactagtataaagttgta 68
           ||||||||| |||||||||||| ||||||| |||| ||||||  |||||||||| |||||
Sbjct: 100 tactccctccgtcccaaaataagtgtctca-ctttgtactaactctagtataaaattgta 42

                                                
Query: 69  ttaagtttaagatacttatttttggacggagggagta 105
            |||| || ||| ||||||||| ||||||||||||||
Sbjct: 41  ctaaggttgagacacttattttgggacggagggagta 5



 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                          
Query: 9  tactccctctgtcccaaaataactgtctcaac 40
          ||||||||| |||||||||||| |||||||||
Sbjct: 5  tactccctccgtcccaaaataagtgtctcaac 36




>RF00906;MIR1122;AY943294.1/62260-62364 112509:Hordeum vulgare
           subsp. vulgare (domesticated barley)
          Length = 105

 Score = 89.7 bits (45), Expect = 7e-18
 Identities = 84/97 (86%)
 Strand = Plus / Minus

                                                                       
Query: 9   tactccctctgtcccaaaataactgtctcaactttatactaaaactagtataaagttgta 68
           |||| |||| ||||||||||||||||||||||||| || || |  ||||| ||| |||||
Sbjct: 101 tacttcctccgtcccaaaataactgtctcaactttgtattagatttagtacaaaattgta 42

                                                
Query: 69  ttaagtttaagatacttatttttggacggagggagta 105
           ||||| |||||| ||||||||| | ||||||||||||
Sbjct: 41  ttaagcttaagacacttattttggaacggagggagta 5




>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
          Length = 105

 Score = 87.7 bits (44), Expect = 3e-17
 Identities = 86/100 (86%)
 Strand = Plus / Minus

                                                                       
Query: 6   tactactccctctgtcccaaaataactgtctcaactttatactaaaactagtataaagtt 65
           |||||||||||| |||||||||||| |||||||||||| || |||   ||||| || |||
Sbjct: 104 tactactccctccgtcccaaaataaatgtctcaactttgtattaactttagtacaaggtt 45

                                                   
Query: 66  gtattaagtttaagatacttatttttggacggagggagta 105
           ||| |||| || ||| ||||||||| ||||||||||||||
Sbjct: 44  gtactaagcttgagacacttattttgggacggagggagta 5



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 9  tactccctctgtcccaaaataactgtctcaa 39
          ||||||||| |||||||||||| ||||||||
Sbjct: 5  tactccctccgtcccaaaataagtgtctcaa 35




>RF00906;MIR1122;AJ249141.1/1014-910 4513:Hordeum vulgare
          Length = 105

 Score = 83.8 bits (42), Expect = 4e-16
 Identities = 81/94 (86%)
 Strand = Plus / Minus

                                                                       
Query: 9   tactccctctgtcccaaaataactgtctcaactttatactaaaactagtataaagttgta 68
           ||||||||| ||| ||||||||||||||||||||| || ||   |||||| |||||||||
Sbjct: 101 tactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagttgta 42

                                             
Query: 69  ttaagtttaagatacttatttttggacggaggga 102
            |||| |||||| ||||||||| |||| ||||||
Sbjct: 41  ctaagcttaagacacttattttaggaccgaggga 8




>RF00906;MIR1122;AK249748.1/2677-2573 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 105

 Score = 81.8 bits (41), Expect = 2e-15
 Identities = 86/101 (85%)
 Strand = Plus / Plus

                                                                       
Query: 9   tactccctctgtcccaaaataactgtctcaactttatactaaaactagtataaagttgta 68
           |||||||||||| ||||||||||||||| |||||| |||||    || |||||| || ||
Sbjct: 5   tactccctctgttccaaaataactgtcttaactttgtactagctttactataaatttata 64

                                                    
Query: 69  ttaagtttaagatacttatttttggacggagggagtactag 109
            ||||||||||| | |||||||  |||||||||||||||||
Sbjct: 65  ctaagtttaagacatttattttgcgacggagggagtactag 105




>RF00906;MIR1122;AY133251.1/901-1005 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 105

 Score = 81.8 bits (41), Expect = 2e-15
 Identities = 83/97 (85%)
 Strand = Plus / Minus

                                                                       
Query: 9   tactccctctgtcccaaaataactgtctcaactttatactaaaactagtataaagttgta 68
           ||||||||| ||||||||||||||||||||||||| |||||   |||||| ||| |||||
Sbjct: 101 tactccctccgtcccaaaataactgtctcaactttgtactagctctagtacaaaattgta 42

                                                
Query: 69  ttaagtttaagatacttatttttggacggagggagta 105
            || | | |||| ||||||||| | ||||||||||||
Sbjct: 41  ctacgctcaagacacttattttggaacggagggagta 5




>RF00906;MIR1122;FJ477093.1/40908-41001 4513:Hordeum vulgare
          Length = 94

 Score = 75.8 bits (38), Expect = 1e-13
 Identities = 53/58 (91%)
 Strand = Plus / Plus

                                                                    
Query: 9  tactccctctgtcccaaaataactgtctcaactttatactaaaactagtataaagttg 66
          |||||||||||||||||||||| || ||||||||| |||||||  |||||||||||||
Sbjct: 5  tactccctctgtcccaaaataagtgactcaactttgtactaaagttagtataaagttg 62



 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                    
Query: 9  tactccctctgtcccaaaataactgtctcaactttatactaa 50
          ||||||||| |||||||| ||| || ||||||||||||||||
Sbjct: 90 tactccctccgtcccaaattaagtgactcaactttatactaa 49




>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
          Length = 105

 Score = 75.8 bits (38), Expect = 1e-13
 Identities = 83/98 (84%)
 Strand = Plus / Minus

                                                                       
Query: 9   tactccctctgtcccaaaataactgtctcaactttatactaaaactagtataaagttgta 68
           ||||||||| |||||||||||| ||||| |||||| ||||||   ||||| |||||||||
Sbjct: 101 tactccctccgtcccaaaataagtgtcttaactttgtactaactttagtacaaagttgta 42

                                                 
Query: 69  ttaagtttaagatacttatttttggacggagggagtac 106
            || | || ||| |||||||||  ||||||||||||||
Sbjct: 41  ctaggcttgagacacttattttgagacggagggagtac 4



 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 75  ttaagatacttatttttggacggagggagtac 106
           |||||| ||||||||| |||||||||||||||
Sbjct: 71  ttaagacacttattttgggacggagggagtac 102




>RF00906;MIR1122;DQ871219.1/106890-106994 85692:Triticum turgidum
           subsp. dicoccoides
          Length = 105

 Score = 73.8 bits (37), Expect = 4e-13
 Identities = 82/97 (84%)
 Strand = Plus / Minus

                                                                       
Query: 9   tactccctctgtcccaaaataactgtctcaactttatactaaaactagtataaagttgta 68
           |||||||||  ||||||||||| |||||||||||| |||||   |||||| ||| || ||
Sbjct: 101 tactccctccatcccaaaataagtgtctcaactttgtactatctctagtacaaattttta 42

                                                
Query: 69  ttaagtttaagatacttatttttggacggagggagta 105
            |||| | |||| ||||||||| ||||||||||||||
Sbjct: 41  ctaagctcaagacacttattttgggacggagggagta 5




>RF00906;MIR1122;AK252392.1/1279-1175 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 105

 Score = 73.8 bits (37), Expect = 4e-13
 Identities = 79/93 (84%)
 Strand = Plus / Minus

                                                                       
Query: 9   tactccctctgtcccaaaataactgtctcaactttatactaaaactagtataaagttgta 68
           ||||||||| ||||||||||| |||||| |||||| |||||   |  ||||||| |||||
Sbjct: 101 tactccctccgtcccaaaatatctgtcttaactttgtactagctcatgtataaaattgta 42

                                            
Query: 69  ttaagtttaagatacttatttttggacggaggg 101
            |||| |||||| ||||||||| ||||||||||
Sbjct: 41  ctaagcttaagacacttattttgggacggaggg 9




>RF00906;MIR1122;DQ445236.1/13423-13319 112509:Hordeum vulgare
           subsp. vulgare (domesticated barley)
          Length = 105

 Score = 73.8 bits (37), Expect = 4e-13
 Identities = 82/97 (84%)
 Strand = Plus / Plus

                                                                       
Query: 9   tactccctctgtcccaaaataactgtctcaactttatactaaaactagtataaagttgta 68
           ||||||||| || ||||||||| |||||||| ||| |||||   |||||| |||||||||
Sbjct: 5   tactccctccgttccaaaataagtgtctcaaatttgtactagctctagtacaaagttgta 64

                                                
Query: 69  ttaagtttaagatacttatttttggacggagggagta 105
            |||| || ||||| ||||||| | ||||||||||||
Sbjct: 65  ctaagcttgagatagttattttggaacggagggagta 101




>RF00906;MIR1122;EU282770.1/593-711 112509:Hordeum vulgare subsp.
          vulgare (domesticated barley)
          Length = 119

 Score = 67.9 bits (34), Expect = 3e-11
 Identities = 76/90 (84%)
 Strand = Plus / Plus

                                                                      
Query: 6  tactactccctctgtcccaaaataactgtctcaactttatactaaaactagtataaagtt 65
          |||||||||||| ||| |||||||  |||||||||||||  |||   |||||||||||||
Sbjct: 2  tactactccctccgtctcaaaataggtgtctcaactttaccctagctctagtataaagtt 61

                                        
Query: 66 gtattaagtttaagatacttatttttggac 95
          ||| ||||||| ||| | ||||||| ||||
Sbjct: 62 gtactaagtttgagaaagttattttgggac 91



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 9   tactccctctgtcccaaaataactgtc 35
           ||||||||| |||||||||||||||||
Sbjct: 115 tactccctccgtcccaaaataactgtc 89




>RF00906;MIR1122;AF488415.1/78603-78755 4568:Triticum monococcum
          Length = 153

 Score = 65.9 bits (33), Expect = 1e-10
 Identities = 57/65 (87%)
 Strand = Plus / Minus

                                                                       
Query: 9   tactccctctgtcccaaaataactgtctcaactttatactaaaactagtataaagttgta 68
           ||||||||| ||||||||||||||||||||| ||| ||||||   ||||| |||||||||
Sbjct: 149 tactccctccgtcccaaaataactgtctcaagtttgtactaactttagtacaaagttgta 90

                
Query: 69  ttaag 73
            ||||
Sbjct: 89  ctaag 85



 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                       
Query: 33  gtctcaactttatactaaaactagtataaagttgtattaagtttaagatacttatttttg 92
           ||||||||||| |||||||  ||||  ||||||||| |||| || ||| ||||||||| |
Sbjct: 77  gtctcaactttgtactaaatttagtgcaaagttgtactaaggttgagacacttattttgg 18

                            
Query: 93  gacggagggagtactag 109
           |||| |||||| |||||
Sbjct: 17  gacgaagggagaactag 1




>RF00906;MIR1122;AF474373.1/50497-50394 112509:Hordeum vulgare
           subsp. vulgare (domesticated barley)
          Length = 104

 Score = 65.9 bits (33), Expect = 1e-10
 Identities = 85/101 (84%), Gaps = 1/101 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gtactactccctctgtcccaaaataactgtctcaactttatactaaaactagtataaagt 64
           |||||||||||||  ||||||||||| |||||||||||| |||||   |||||| |||||
Sbjct: 104 gtactactccctcc-tcccaaaataagtgtctcaactttgtactagttctagtacaaagt 46

                                                    
Query: 65  tgtattaagtttaagatacttatttttggacggagggagta 105
           |||| || | || ||| | ||||||| |||||||| |||||
Sbjct: 45  tgtactaggcttgagacagttattttgggacggagtgagta 5



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 9  tactccctctgtcccaaaataactgtctcaa 39
          ||||| ||| |||||||||||||||||||||
Sbjct: 5  tactcactccgtcccaaaataactgtctcaa 35




>RF00906;MIR1122;DQ995510.1/1615-1718 4513:Hordeum vulgare
          Length = 104

 Score = 65.9 bits (33), Expect = 1e-10
 Identities = 82/97 (84%), Gaps = 1/97 (1%)
 Strand = Plus / Minus

                                                                       
Query: 9   tactccctctgtcccaaaataactgtctcaactttatactaaaactagtataaagttgta 68
           |||||||||  |||||||||||||||||||||||| |||||   |||||| |||||||||
Sbjct: 100 tactccctccatcccaaaataactgtctcaactttgtactagctctagtacaaagttgta 41

                                                
Query: 69  ttaagtttaagatacttatttttggacggagggagta 105
             ||| || ||| | |||||||  |||||||||||||
Sbjct: 40  caaag-ttgagacagttattttgagacggagggagta 5



 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                             
Query: 9  tactccctctgtcccaaaataactgtctcaacttt 43
          ||||||||| ||| |||||||||||||||||||||
Sbjct: 5  tactccctccgtctcaaaataactgtctcaacttt 39




>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 105

 Score = 65.9 bits (33), Expect = 1e-10
 Identities = 81/97 (83%)
 Strand = Plus / Minus

                                                                       
Query: 9   tactccctctgtcccaaaataactgtctcaactttatactaaaactagtataaagttgta 68
           ||||||||| |||||||||||| |||||||||||| |||||    ||||| ||| ||  |
Sbjct: 101 tactccctccgtcccaaaataagtgtctcaactttgtactagctgtagtacaaaattaca 42

                                                
Query: 69  ttaagtttaagatacttatttttggacggagggagta 105
            |||| || ||| ||||||||| ||||||||||||||
Sbjct: 41  ctaagcttgagacacttattttgggacggagggagta 5



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 9  tactccctctgtcccaaaataactgtctcaa 39
          ||||||||| |||||||||||| ||||||||
Sbjct: 5  tactccctccgtcccaaaataagtgtctcaa 35




>RF00906;MIR1122;DQ175992.1/50-154 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 105

 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 70/83 (84%)
 Strand = Plus / Minus

                                                                       
Query: 8   ctactccctctgtcccaaaataactgtctcaactttatactaaaactagtataaagttgt 67
           |||||||||| |||||||||||| ||||| |||||| | |||   |||||||||| || |
Sbjct: 102 ctactccctccgtcccaaaataattgtcttaactttgttctagctctagtataaaattat 43

                                  
Query: 68  attaagtttaagatacttatttt 90
           | |||| |||||| |||||||||
Sbjct: 42  actaagcttaagacacttatttt 20




>RF00906;MIR1122;X83518.1/7301-7197 4513:Hordeum vulgare
          Length = 105

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 80/97 (82%)
 Strand = Plus / Minus

                                                                       
Query: 9   tactccctctgtcccaaaataactgtctcaactttatactaaaactagtataaagttgta 68
           |||||||||| | ||||||||| |||||||||||| |||||   ||| || |||||||||
Sbjct: 101 tactccctctcttccaaaataagtgtctcaactttgtactagctctactacaaagttgta 42

                                                
Query: 69  ttaagtttaagatacttatttttggacggagggagta 105
            |||| || ||| | |||||||  || ||||||||||
Sbjct: 41  ctaagcttgagacagttattttgagatggagggagta 5




>RF00906;MIR1122;AY821694.1/1308-1197 37674:Crithopsis delileana
          Length = 112

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                       
Query: 9   tactccctctgtcccaaaataactgtctcaactttatactaaaactagtataaagttgta 68
           |||||||||  ||||||||||| |||||||||||| ||||||   ||||| |||||||||
Sbjct: 108 tactccctccatcccaaaataagtgtctcaactttgtactaactttagtacaaagttgta 49

                
Query: 69  ttaag 73
            ||||
Sbjct: 48  ctaag 44



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 6  tactactccctctgtcccaaaataactgtct 36
          |||||||||||| |||||||||||| |||||
Sbjct: 2  tactactccctccgtcccaaaataagtgtct 32




>RF00906;MIR1122;DQ901436.1/1229-1333 4565:Triticum aestivum
          (bread wheat)
          Length = 105

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                 
Query: 11 ctccctctgtcccaaaataactgtctcaactttatacta 49
          ||||||| |||||||||||| |||||||||||| |||||
Sbjct: 7  ctccctccgtcccaaaataagtgtctcaactttgtacta 45




>RF00906;MIR1122;AF521177.1/81577-81474 4513:Hordeum vulgare
          Length = 104

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                      
Query: 9   tactccctctgtcccaaaataactgtctcaactttatactaaa 51
           ||||||||| |||||||||||| || ||||||||| |||||||
Sbjct: 100 tactccctccgtcccaaaataagtgactcaactttgtactaaa 58




>RF00906;MIR1122;FJ374624.1/2920-2820 4572:Triticum urartu
          Length = 101

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                    
Query: 9  tactccctctgtcccaaaataactgtctcaactttatactaa 50
          ||||| |||||||||||||||| || ||||||||| ||||||
Sbjct: 97 tactcgctctgtcccaaaataagtgactcaactttgtactaa 56




>RF00906;MIR1122;AB183299.1/312-404 4565:Triticum aestivum (bread
          wheat)
          Length = 93

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 11 ctccctctgtcccaaaataactgtctcaacttta 44
          ||||||| |||||||||||| |||||||||||||
Sbjct: 7  ctccctccgtcccaaaataagtgtctcaacttta 40



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                            
Query: 9  tactccctctgtcccaaaataactgtctcaactt 42
          |||| |||| |||||||||||| |||||||||||
Sbjct: 89 tacttcctccgtcccaaaataagtgtctcaactt 56




>RF00906;MIR1122;AK252095.1/1820-1925 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 106

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 9   tactccctctgtcccaaaataactgtctcaactttata 46
           |||||||||||||||||||||| |||| ||| ||||||
Sbjct: 102 tactccctctgtcccaaaataagtgtcacaaatttata 65




>RF00906;MIR1122;AY268139.1/69673-69778 4513:Hordeum vulgare
          Length = 106

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 81/98 (82%), Gaps = 1/98 (1%)
 Strand = Plus / Minus

                                                                       
Query: 9   tactccctctgtcccaaaataactgtctcaactttatactaaaactagtataaagttgta 68
           |||| |||| ||| |||||||||||||| ||||||||| |||    |||||||| |||||
Sbjct: 102 tacttcctccgtctcaaaataactgtcttaactttatattaatttcagtataaaattgta 43

                                                 
Query: 69  -ttaagtttaagatacttatttttggacggagggagta 105
            |||||||||| | | |||||||   ||||||||||||
Sbjct: 42  tttaagtttaaaacagttattttgaaacggagggagta 5




>RF00906;MIR1122;AF521177.1/206122-206018 4513:Hordeum vulgare
          Length = 105

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 56/66 (84%)
 Strand = Plus / Minus

                                                                       
Query: 8   ctactccctctgtcccaaaataactgtctcaactttatactaaaactagtataaagttgt 67
           |||||||||| ||  |||||||| |||||||||||| |||||   |||||| ||||||||
Sbjct: 102 ctactccctccgtttcaaaataaatgtctcaactttgtactagctctagtacaaagttgt 43

                 
Query: 68  attaag 73
           | ||||
Sbjct: 42  actaag 37




>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
          Length = 132

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                    
Query: 9  tactccctctgtcccaaaataactgtctcaactttatactaa 50
          ||||||||| |||||||||||| || ||||||||| ||||||
Sbjct: 5  tactccctccgtcccaaaataagtgactcaactttgtactaa 46




>RF00906;MIR1122;U29095.1/333-439 4565:Triticum aestivum (bread
          wheat)
          Length = 107

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 39/43 (90%), Gaps = 2/43 (4%)
 Strand = Plus / Plus

                                                     
Query: 9  tactccctctgtcccaaaataactg--tctcaactttatacta 49
          ||||||||| |||||||||||| ||  ||||||||||||||||
Sbjct: 5  tactccctccgtcccaaaataagtggatctcaactttatacta 47




>RF00906;MIR1122;AK250735.1/291-376 112509:Hordeum vulgare subsp.
          vulgare (domesticated barley)
          Length = 86

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 40/44 (90%), Gaps = 1/44 (2%)
 Strand = Plus / Plus

                                                      
Query: 7  actactccctctgtcccaaaataactgtct-caactttatacta 49
          ||||||||||| |||||||||||| ||||| ||||||| |||||
Sbjct: 3  actactccctccgtcccaaaataagtgtctccaactttgtacta 46




>RF00906;MIR1122;AAAA02001246.1/17986-18106 39946:Oryza sativa
          Indica Group
          Length = 121

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 5  gtactactccctctgtcccaaaataact 32
          |||||||||||||||||| |||||||||
Sbjct: 1  gtactactccctctgtcctaaaataact 28




>RF00906;MIR1122;AL732333.2/10670-10758 4530:Oryza sativa (rice)
          Length = 89

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 85  tatttttggacggagggagtacta 108
           ||||||||||||||||||||||||
Sbjct: 65  tatttttggacggagggagtacta 88




>RF00906;MIR1122;AP008214.1/27846174-27846285 39947:Oryza sativa
          Japonica Group
          Length = 112

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 6  tactactccctctgtcccaaaata 29
          ||||||||||||||||||||||||
Sbjct: 2  tactactccctctgtcccaaaata 25




>RF00906;MIR1122;FJ491378.1/4581-4466 4550:Secale cereale (rye)
          Length = 116

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 9  tactccctctgtcccaaaataactgtctcaa 39
          |||||||||||||||||||||| || |||||
Sbjct: 5  tactccctctgtcccaaaataagtgactcaa 35




>RF00906;MIR1122;AF181455.1/3108-2994 4513:Hordeum vulgare
          Length = 115

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 82  acttatttttggacggagggagtacta 108
           ||||||||| |||||||||||||||||
Sbjct: 88  acttattttgggacggagggagtacta 114




>RF00906;MIR1122;EU282251.1/1314-1209 52152:Elymus repens
          Length = 106

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                 
Query: 6  tactactccctctgtcccaaaataactgtctcaacttta 44
          |||||||||||| |||||||||||| |||| ||| ||||
Sbjct: 2  tactactccctccgtcccaaaataagtgtcgcaaattta 40




>RF00906;MIR1122;AACV01009606.1/13757-13637 39947:Oryza sativa
           Japonica Group
          Length = 121

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 9   tactccctctgtcccaaaataac 31
           |||||||||||||||||||||||
Sbjct: 117 tactccctctgtcccaaaataac 95




>RF00906;MIR1122;DQ267106.1/62901-62968 4572:Triticum urartu
          Length = 68

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 9  tactccctctgtcccaaaataa 30
          ||||||||||||||||||||||
Sbjct: 64 tactccctctgtcccaaaataa 43




>RF00906;MIR1122;DQ537336.1/120340-120474 4565:Triticum aestivum
           (bread wheat)
          Length = 135

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 84  ttatttttggacggagggagta 105
           ||||||||||||||||||||||
Sbjct: 110 ttatttttggacggagggagta 131




>RF00906;MIR1122;EU626553.1/80133-80237 4572:Triticum urartu
          Length = 105

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                    
Query: 9  tactccctctgtcccaaaataactgtctcaactttatactaa 50
          ||||||||| || ||||||||  || ||||||||||||||||
Sbjct: 5  tactccctccgttccaaaatagatgactcaactttatactaa 46




>RF00906;MIR1122;AP004556.3/98434-98589 39947:Oryza sativa Japonica
           Group
          Length = 156

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 8   ctactccctctgtcccaaaata 29
           ||||||||||||||||||||||
Sbjct: 153 ctactccctctgtcccaaaata 132




>RF00906;MIR1122;AL845344.4/40945-41080 4530:Oryza sativa (rice)
          Length = 136

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 8  ctactccctctgtcccaaaata 29
          ||||||||||||||||||||||
Sbjct: 4  ctactccctctgtcccaaaata 25




>RF00906;MIR1122;AAAA02021906.1/16695-16573 39946:Oryza sativa
           Indica Group
          Length = 123

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 9   tactccctctgtcccaaaataa 30
           ||||||||||||||||||||||
Sbjct: 119 tactccctctgtcccaaaataa 98




>RF00906;MIR1122;AP008213.1/24848104-24848218 39947:Oryza sativa
           Japonica Group
          Length = 115

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 85  tatttttggacggagggagtac 106
           ||||||||||||||||||||||
Sbjct: 91  tatttttggacggagggagtac 112