miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AK249769.1/2180-2285 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 106
Score = 202 bits (102), Expect = 7e-52
Identities = 105/106 (99%)
Strand = Plus / Minus
Query: 3 atagtacttccttcgtcccaaaataagtgtcgctgttttagtactaaatttatactaact 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 atagtacttccttcgtcccaaaataagtgtcgctgttttagtactaaatttatactaact 47
Query: 63 taatactaaatttgggacacttattttaagacggagggagtatatg 108
|||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 46 taatactaaatttgtgacacttattttaagacggagggagtatatg 1
>RF00906;MIR1122;EU282251.1/1314-1209 52152:Elymus repens
Length = 106
Score = 107 bits (54), Expect = 3e-23
Identities = 87/98 (88%)
Strand = Plus / Minus
Query: 7 tacttccttcgtcccaaaataagtgtcgctgttttagtactaaatttatactaacttaat 66
|||| ||| |||||||||||||||||||||| | ||||| || |||| |||||||||| |
Sbjct: 102 tactccctccgtcccaaaataagtgtcgctgctctagtattatatttgtactaacttagt 43
Query: 67 actaaatttgggacacttattttaagacggagggagta 104
|||||||||| |||||||||||| |||||||||||||
Sbjct: 42 actaaatttgcgacacttattttgggacggagggagta 5
Score = 56.0 bits (28), Expect = 1e-07
Identities = 82/100 (82%)
Strand = Plus / Plus
Query: 7 tacttccttcgtcccaaaataagtgtcgctgttttagtactaaatttatactaacttaat 66
|||| ||| |||||||||||||||||||| ||||||||||| || ||| || ||||
Sbjct: 5 tactccctccgtcccaaaataagtgtcgcaaatttagtactaagttagtacaaatataat 64
Query: 67 actaaatttgggacacttattttaagacggagggagtata 106
|||| | | |||||||||||| |||||||||||||||
Sbjct: 65 actagagcagcgacacttattttgggacggagggagtata 104
>RF00906;MIR1122;DQ900687.1/24296-24401 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 106
Score = 75.8 bits (38), Expect = 1e-13
Identities = 86/102 (84%)
Strand = Plus / Minus
Query: 7 tacttccttcgtcccaaaataagtgtcgctgttttagtactaaatttatactaacttaat 66
|||| ||| ||||| ||||||||||||| || | |||||| |||||| |||| | ||| |
Sbjct: 102 tactccctccgtcctaaaataagtgtcgttgatctagtacaaaatttgtactcatttagt 43
Query: 67 actaaatttgggacacttattttaagacggagggagtatatg 108
||| ||| || | |||||||||||||||| ||||||||||||
Sbjct: 42 actgaatatgcgtcacttattttaagacgaagggagtatatg 1
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 78 gacacttattttaagacggagggagtat 105
||||||||||||| ||||||||||||||
Sbjct: 76 gacacttattttaggacggagggagtat 103
>RF00906;MIR1122;AK252095.1/1820-1925 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 106
Score = 73.8 bits (37), Expect = 4e-13
Identities = 73/85 (85%)
Strand = Plus / Plus
Query: 21 caaaataagtgtcgctgttttagtactaaatttatactaacttaatactaaatttgggac 80
||||||||||||||||| ||||||| |||||| |||||| ||| | |||||||| |||
Sbjct: 19 caaaataagtgtcgctgatttagtataaaatttgtactaatttagttataaatttgtgac 78
Query: 81 acttattttaagacggagggagtat 105
||||||||| ||| ||||||||||
Sbjct: 79 acttattttgggacagagggagtat 103
Score = 48.1 bits (24), Expect = 2e-05
Identities = 72/88 (81%)
Strand = Plus / Minus
Query: 17 gtcccaaaataagtgtcgctgttttagtactaaatttatactaacttaatactaaatttg 76
||||||||||||||||| | |||| |||||||| ||| || || ||||||||| |
Sbjct: 92 gtcccaaaataagtgtcacaaatttataactaaattagtacaaattttatactaaatcag 33
Query: 77 ggacacttattttaagacggagggagta 104
|||||||||||| | ||||||||||||
Sbjct: 32 cgacacttattttgatacggagggagta 5
>RF00906;MIR1122;FJ491378.1/3751-3855 4550:Secale cereale (rye)
Length = 105
Score = 67.9 bits (34), Expect = 3e-11
Identities = 74/86 (86%), Gaps = 1/86 (1%)
Strand = Plus / Minus
Query: 16 cgtcccaaaataagtgtcgctgttttagtactaaatttatactaacttaatactaaattt 75
|||||||||||||||||||||| |||| ||| || ||||||||||||| ||||||||
Sbjct: 92 cgtcccaaaataagtgtcgctgatttaatac-aactttatactaactttgtactaaatca 34
Query: 76 gggacacttattttaagacggaggga 101
|||||||||||| ||||||||||
Sbjct: 33 atgacacttattttgggacggaggga 8
>RF00906;MIR1122;EF560592.1/17009-17118 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 110
Score = 58.0 bits (29), Expect = 2e-08
Identities = 51/57 (89%), Gaps = 1/57 (1%)
Strand = Plus / Minus
Query: 7 tacttccttcgtcccaaaataagtgtcgctgttttagtactaaatttatactaactt 63
|||| ||| |||||||||||||||||||||| |||||||| ||| | ||||||||||
Sbjct: 106 tactacctccgtcccaaaataagtgtcgctgatttagtac-aaagtcatactaactt 51
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 20 ccaaaataagtgtcgctgttttagta 45
|||||||||||||||||| |||||||
Sbjct: 18 ccaaaataagtgtcgctgatttagta 43
>RF00906;MIR1122;D30809.1/4836-4921 4565:Triticum aestivum (bread
wheat)
Length = 86
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 16 cgtcccaaaataagtgtcgctgttttagtac 46
|||||||||||||||||||||| ||||||||
Sbjct: 73 cgtcccaaaataagtgtcgctgatttagtac 43
>RF00906;MIR1122;AB183299.1/312-404 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 7 tacttccttcgtcccaaaataagtgtc 33
|||||||| ||||||||||||||||||
Sbjct: 89 tacttcctccgtcccaaaataagtgtc 63
Score = 44.1 bits (22), Expect = 4e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 65 atactaaatttgggacacttattttaagacggagggag 102
|||||||| ||| |||||||||||| |||||||||||
Sbjct: 44 atactaaagttgagacacttattttgggacggagggag 7
>RF00906;MIR1122;AJ234485.1/114-218 4513:Hordeum vulgare
Length = 105
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 78 gacacttattttaagacggagggagta 104
|||||||||||| ||||||||||||||
Sbjct: 31 gacacttattttgagacggagggagta 5
>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
Length = 105
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 78 gacacttattttaagacggagggagta 104
|||||||||||| ||||||||||||||
Sbjct: 31 gacacttattttgagacggagggagta 5
>RF00906;MIR1122;FJ581044.1/175385-175266 4538:Oryza glaberrima
(African rice)
Length = 120
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 81 acttattttaagacggagggagtatat 107
||||||||| |||||||||||||||||
Sbjct: 93 acttattttgagacggagggagtatat 119
>RF01058;MIR806;AACV01007528.1/40785-40545 39947:Oryza sativa
Japonica Group
Length = 241
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 80 cacttattttaagacggagggagtat 105
|||||||||||||||||||| |||||
Sbjct: 26 cacttattttaagacggaggtagtat 1
>RF00906;MIR1122;AF488415.1/78603-78755 4568:Triticum monococcum
Length = 153
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 ccttcgtcccaaaataagtgtc 33
||||||||||||||||||||||
Sbjct: 10 ccttcgtcccaaaataagtgtc 31
>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 78 gacacttattttaagacggagggagtatat 107
|||||||||||| ||||||||||||||||
Sbjct: 75 gacacttattttgggacggagggagtatat 104
>RF00906;MIR1122;AAAA02011454.1/9285-9412 39946:Oryza sativa Indica
Group
Length = 128
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 85 attttaagacggagggagtata 106
||||||||||||||||||||||
Sbjct: 24 attttaagacggagggagtata 3
