miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU282251.1/1314-1209 52152:Elymus repens
Length = 106
Score = 147 bits (74), Expect = 3e-35
Identities = 92/98 (93%)
Strand = Plus / Plus
Query: 7 tactccctccatcccaaaataagtgacgcaaatttagtactaagttagtacaaatataat 66
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgtcgcaaatttagtactaagttagtacaaatataat 64
Query: 67 actaaagcagcgacatttattttgggacagggggagta 104
|||| |||||||||| |||||||||||| | |||||||
Sbjct: 65 actagagcagcgacacttattttgggacggagggagta 102
>RF00906;MIR1122;AK249769.1/2180-2285 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 106
Score = 87.7 bits (44), Expect = 3e-17
Identities = 77/88 (87%)
Strand = Plus / Plus
Query: 7 tactccctccatcccaaaataagtgacgcaaatttagtactaagttagtacaaatataat 66
|||||||||| || |||||||||| | ||||||||||| |||||||||| |||| || |
Sbjct: 5 tactccctccgtcttaaaataagtgtcacaaatttagtattaagttagtataaatttagt 64
Query: 67 actaaagcagcgacatttattttgggac 94
|||||| |||||||| ||||||||||||
Sbjct: 65 actaaaacagcgacacttattttgggac 92
>RF00906;MIR1122;AK252095.1/1820-1925 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 106
Score = 79.8 bits (40), Expect = 7e-15
Identities = 73/84 (86%)
Strand = Plus / Minus
Query: 7 tactccctccatcccaaaataagtgacgcaaatttagtactaagttagtacaaatataat 66
||||||||| |||||||||||||| | |||||||| ||||| ||||||||||| | ||
Sbjct: 102 tactccctctgtcccaaaataagtgtcacaaatttataactaaattagtacaaattttat 43
Query: 67 actaaagcagcgacatttattttg 90
|||||| |||||||| ||||||||
Sbjct: 42 actaaatcagcgacacttattttg 19
>RF00906;MIR1122;DQ871219.1/106890-106994 85692:Triticum turgidum
subsp. dicoccoides
Length = 105
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 5 tgtactccctccatcccaaaataagtg 31
|||||||||||||||||||||||||||
Sbjct: 103 tgtactccctccatcccaaaataagtg 77
>RF00906;MIR1122;DQ900687.1/24296-24401 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 106
Score = 54.0 bits (27), Expect = 4e-07
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 22 aaaataagtgacgcaaatttagtactaagttagtacaaatataatactaaagcagcgaca 81
||||||||||||||| ||| |||||||| | ||||||||| | ||||| | || |||||
Sbjct: 20 aaaataagtgacgcatattcagtactaaatgagtacaaattttgtactagatcaacgaca 79
Query: 82 tttattttgggacagggggagta 104
||||||| |||| | |||||||
Sbjct: 80 cttattttaggacggagggagta 102
>RF00906;MIR1122;AY663392.1/117099-117203 4565:Triticum aestivum
(bread wheat)
Length = 105
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 7 tactccctccatcccaaaataagtg 31
|||||||||||||||||||||||||
Sbjct: 101 tactccctccatcccaaaataagtg 77
>RF00906;MIR1122;AJ507395.1/7785-7899 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 115
Score = 50.1 bits (25), Expect = 6e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 6 gtactccctccatcccaaaataagtgacgcaaa 38
||||||||||| |||||||||||||||| ||||
Sbjct: 112 gtactccctccgtcccaaaataagtgactcaaa 80
>RF00906;MIR1122;EU282656.1/645-750 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 106
Score = 50.1 bits (25), Expect = 6e-06
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 4 atgtactccctccatcccaaaataagtgacgcaaatttagtactaagttagtacaaatat 63
|||||||||||| |||||||||||||| || ||||||| || || |||||||||| |
Sbjct: 105 atgtactccctcggtcccaaaataagtgtcgtaaatttataaccaaactagtacaaattt 46
Query: 64 aatactaaa 72
||||||||
Sbjct: 45 tatactaaa 37
>RF00906;MIR1122;AY821694.1/1308-1197 37674:Crithopsis delileana
Length = 112
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 7 tactccctccatcccaaaataagtg 31
|||||||||||||||||||||||||
Sbjct: 108 tactccctccatcccaaaataagtg 84
>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
Length = 132
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 5 tgtactccctccatcccaaaataagtgac 33
||||||| |||||||||||||||||||||
Sbjct: 130 tgtactcgctccatcccaaaataagtgac 102
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 7 tactccctccatcccaaaataagtgac 33
|||||||||| ||||||||||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgac 31
>RF00906;MIR1122;AF525764.1/1593-1489 200361:Aegilops tauschii
subsp. strangulata
Length = 105
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 7 tactccctccatcccaaaataagtg 31
|||||||||||||||||||||||||
Sbjct: 101 tactccctccatcccaaaataagtg 77
>RF00906;MIR1122;AACV01019101.1/4942-4817 39947:Oryza sativa
Japonica Group
Length = 126
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 6 gtactccctccatcccaaaataagt 30
|||||||||||||||||||||||||
Sbjct: 123 gtactccctccatcccaaaataagt 99
>RF00906;MIR1122;FJ491378.1/4581-4466 4550:Secale cereale (rye)
Length = 116
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 7 tactccctccatcccaaaataagtgacgcaaa 38
|||||||||| |||||||||||||||| ||||
Sbjct: 112 tactccctccgtcccaaaataagtgactcaaa 81
>RF00906;MIR1122;AF181455.1/3108-2994 4513:Hordeum vulgare
Length = 115
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 6 gtactccctccatcccaaaataagtgac 33
||||||||||| ||||||||||||||||
Sbjct: 112 gtactccctccgtcccaaaataagtgac 85
>RF00906;MIR1122;AP008214.1/14410723-14410632 39947:Oryza sativa
Japonica Group
Length = 92
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 8 actccctccatcccaaaataagtg 31
||||||||||||||||||||||||
Sbjct: 87 actccctccatcccaaaataagtg 64
>RF01058;MIR806;AAAA02032712.1/19270-19031 39946:Oryza sativa Indica
Group
Length = 240
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 7 tactccctccatcccaaaataag 29
|||||||||||||||||||||||
Sbjct: 239 tactccctccatcccaaaataag 217
>RF00906;MIR1122;D30809.1/4836-4921 4565:Triticum aestivum (bread
wheat)
Length = 86
Score = 46.1 bits (23), Expect = 9e-05
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 66 tactaaagcagcgacatttattttgggacagggggagta 104
||||||| |||||||| |||||||||||| | |||||||
Sbjct: 44 tactaaatcagcgacacttattttgggacggtgggagta 82
Score = 44.1 bits (22), Expect = 4e-04
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 7 tactccctccatcccaaaataagtgacgcaaatttagtactaagtt 52
||||||| || |||||||||||||| ||| ||||||||| |||||
Sbjct: 82 tactcccaccgtcccaaaataagtgtcgctgatttagtacaaagtt 37
>RF00906;MIR1122;AF521177.1/81577-81474 4513:Hordeum vulgare
Length = 104
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 7 tactccctccatcccaaaataagtgac 33
|||||||||| ||||||||||||||||
Sbjct: 100 tactccctccgtcccaaaataagtgac 74
>RF00906;MIR1122;DQ995510.1/1615-1718 4513:Hordeum vulgare
Length = 104
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 6 gtactccctccatcccaaaataa 28
|||||||||||||||||||||||
Sbjct: 101 gtactccctccatcccaaaataa 79
>RF00906;MIR1122;EU730902.1/34362-34465 15368:Brachypodium
distachyon
Length = 104
Score = 46.1 bits (23), Expect = 9e-05
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 7 tactccctccatcccaaaataagtgacgcaaatttagtactaagttagtacaaat 61
||||||||||| ||| |||||||| | | ||||||||| ||||||||||||||
Sbjct: 100 tactccctccaatccataataagtgtcagagatttagtacaaagttagtacaaat 46
>RF00906;MIR1122;AAAA02035057.1/21564-21428 39946:Oryza sativa
Indica Group
Length = 137
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 gtactccctccatcccaaaataa 28
|||||||||||||||||||||||
Sbjct: 4 gtactccctccatcccaaaataa 26
>RF00906;MIR1122;AP008213.1/14562972-14563105 39947:Oryza sativa
Japonica Group
Length = 134
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 84 tattttgggacagggggagtaga 106
|||||||||||||||||||||||
Sbjct: 25 tattttgggacagggggagtaga 3
>RF00906;MIR1122;AAAA02021800.1/3616-3483 39946:Oryza sativa Indica
Group
Length = 134
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 84 tattttgggacagggggagtaga 106
|||||||||||||||||||||||
Sbjct: 110 tattttgggacagggggagtaga 132
>RF00906;MIR1122;AP006526.2/71284-71151 39947:Oryza sativa Japonica
Group
Length = 134
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 6 gtactccctccatcccaaaataa 28
|||||||||||||||||||||||
Sbjct: 131 gtactccctccatcccaaaataa 109
>RF00906;MIR1122;AL731784.3/7045-7181 4530:Oryza sativa (rice)
Length = 137
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 gtactccctccatcccaaaataa 28
|||||||||||||||||||||||
Sbjct: 4 gtactccctccatcccaaaataa 26
>RF00906;MIR1122;AACV01018737.1/24214-24370 39947:Oryza sativa
Japonica Group
Length = 157
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 5 tgtactccctccatcccaaaata 27
|||||||||||||||||||||||
Sbjct: 155 tgtactccctccatcccaaaata 133
>RF01058;MIR806;AACV01004692.1/2655-2900 39947:Oryza sativa
Japonica Group
Length = 246
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 6 gtactccctccatcccaaaataagtg 31
||||||||||| ||||||||||||||
Sbjct: 1 gtactccctccgtcccaaaataagtg 26
>RF01058;MIR806;AP008213.1/8364293-8364055 39947:Oryza sativa
Japonica Group
Length = 239
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 gtactccctccatcccaaaata 27
||||||||||||||||||||||
Sbjct: 1 gtactccctccatcccaaaata 22
>RF00906;MIR1122;EF560592.1/17009-17118 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 110
Score = 44.1 bits (22), Expect = 4e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 66 tactaaagcagcgacatttattttgggacagggggagtagaa 107
||||||| |||||||| |||||||||||| | || |||||||
Sbjct: 68 tactaaatcagcgacacttattttgggacggaggtagtagaa 109
>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 6 gtactccctccatcccaaaataagtg 31
||||||||||| ||||||||||||||
Sbjct: 102 gtactccctccgtcccaaaataagtg 77
>RF00906;MIR1122;AP004862.3/965-874 39947:Oryza sativa Japonica
Group
Length = 92
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 7 tactccctccatcccaaaataa 28
||||||||||||||||||||||
Sbjct: 88 tactccctccatcccaaaataa 67
>RF00906;MIR1122;AAAA02004484.1/27911-27847 39946:Oryza sativa
Indica Group
Length = 65
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 6 gtactccctccatcccaaaata 27
||||||||||||||||||||||
Sbjct: 62 gtactccctccatcccaaaata 41
>RF00906;MIR1122;AL845344.4/40945-41080 4530:Oryza sativa (rice)
Length = 136
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 7 tactccctccatcccaaaataa 28
||||||||||||||||||||||
Sbjct: 132 tactccctccatcccaaaataa 111
>RF00906;MIR1122;AAAA02000569.1/43583-43659 39946:Oryza sativa
Indica Group
Length = 77
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 6 gtactccctccatcccaaaata 27
||||||||||||||||||||||
Sbjct: 74 gtactccctccatcccaaaata 53
>RF00906;MIR1122;AP008208.1/6008947-6008837 39947:Oryza sativa
Japonica Group
Length = 111
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 gtactccctccatcccaaaata 27
||||||||||||||||||||||
Sbjct: 4 gtactccctccatcccaaaata 25
>RF00906;MIR1122;AP003508.3/31246-31125 39947:Oryza sativa Japonica
Group
Length = 122
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 7 tactccctccatcccaaaataa 28
||||||||||||||||||||||
Sbjct: 118 tactccctccatcccaaaataa 97
