miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU593539.1/914-1018 4513:Hordeum vulgare
Length = 105
Score = 123 bits (62), Expect = 5e-28
Identities = 88/97 (90%)
Strand = Plus / Plus
Query: 7 tactccctccgtcctaaaataagtgtcttacggttagtacaattntatactagagctagt 66
|||||||||||||| ||||||| ||||||| | |||||| || | ||||||||| |||||
Sbjct: 5 tactccctccgtcccaaaataactgtcttaagcttagtataaatttatactagatctagt 64
Query: 67 ataaagttgagacagttattttgggagggagggagta 103
|||||||||||||||||||||||||| ||||||||||
Sbjct: 65 ataaagttgagacagttattttgggacggagggagta 101
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 76 agacagttattttgggagggagggagta 103
||||||||||||||||| ||||||||||
Sbjct: 32 agacagttattttgggacggagggagta 5
>RF00906;MIR1122;AY133251.1/901-1005 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 117 bits (59), Expect = 3e-26
Identities = 88/98 (89%)
Strand = Plus / Plus
Query: 7 tactccctccgtcctaaaataagtgtcttacggttagtacaattntatactagagctagt 66
|||||||||||| | |||||||||||||| | |||||||||| | |||||||||||||
Sbjct: 5 tactccctccgttccaaaataagtgtcttgagcgtagtacaattttgtactagagctagt 64
Query: 67 ataaagttgagacagttattttgggagggagggagtac 104
| |||||||||||||||||||||||| |||||||||||
Sbjct: 65 acaaagttgagacagttattttgggacggagggagtac 102
>RF00906;MIR1122;DQ445238.1/5626-5730 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 115 bits (58), Expect = 1e-25
Identities = 87/97 (89%)
Strand = Plus / Plus
Query: 7 tactccctccgtcctaaaataagtgtcttacggttagtacaattntatactagagctagt 66
|||||||||||||| ||||||| ||||||| | |||||| || | |||| |||| |||||
Sbjct: 5 tactccctccgtcccaaaataactgtcttaagcttagtataaatttatattagatctagt 64
Query: 67 ataaagttgagacagttattttgggagggagggagta 103
|||||||||||||||||||||||||| ||||||||||
Sbjct: 65 ataaagttgagacagttattttgggacggagggagta 101
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 76 agacagttattttgggagggagggagta 103
||||||||||||||||| ||||||||||
Sbjct: 32 agacagttattttgggacggagggagta 5
>RF00906;MIR1122;AJ249141.1/1014-910 4513:Hordeum vulgare
Length = 105
Score = 109 bits (55), Expect = 7e-24
Identities = 84/94 (89%)
Strand = Plus / Plus
Query: 10 tccctccgtcctaaaataagtgtcttacggttagtacaattntatactagagctagtata 69
|||||| |||||||||||||||||||| | ||||||||| | | ||||||||||| || |
Sbjct: 8 tccctcggtcctaaaataagtgtcttaagcttagtacaactttgtactagagctaataca 67
Query: 70 aagttgagacagttattttgggagggagggagta 103
|||||||||||||||||||| || ||||||||||
Sbjct: 68 aagttgagacagttattttgagacggagggagta 101
>RF00906;MIR1122;AK252392.1/1279-1175 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 107 bits (54), Expect = 3e-23
Identities = 83/93 (89%)
Strand = Plus / Plus
Query: 11 ccctccgtcctaaaataagtgtcttacggttagtacaattntatactagagctagtataa 70
|||||||||| ||||||||||||||| | ||||||||||| ||||| ||||||||| ||
Sbjct: 9 ccctccgtcccaaaataagtgtcttaagcttagtacaattttatacatgagctagtacaa 68
Query: 71 agttgagacagttattttgggagggagggagta 103
|||| |||||| |||||||||| ||||||||||
Sbjct: 69 agttaagacagatattttgggacggagggagta 101
>RF00906;MIR1122;DQ871219.1/106890-106994 85692:Triticum turgidum
subsp. dicoccoides
Length = 105
Score = 101 bits (51), Expect = 2e-21
Identities = 86/98 (87%)
Strand = Plus / Plus
Query: 7 tactccctccgtcctaaaataagtgtcttacggttagtacaattntatactagagctagt 66
|||||||||||||| |||||||||||||| | |||||| || | | |||||||| ||||
Sbjct: 5 tactccctccgtcccaaaataagtgtcttgagcttagtaaaaatttgtactagagatagt 64
Query: 67 ataaagttgagacagttattttgggagggagggagtac 104
| |||||||||||| ||||||||||| |||||||||||
Sbjct: 65 acaaagttgagacacttattttgggatggagggagtac 102
>RF00906;MIR1122;AJ234485.1/114-218 4513:Hordeum vulgare
Length = 105
Score = 101 bits (51), Expect = 2e-21
Identities = 86/98 (87%)
Strand = Plus / Plus
Query: 6 gtactccctccgtcctaaaataagtgtcttacggttagtacaattntatactagagctag 65
|||||||||||||| ||||||||||||||| ||||||||||| | ||||||||||||
Sbjct: 4 gtactccctccgtctcaaaataagtgtcttaatcttagtacaattttgtactagagctag 63
Query: 66 tataaagttgagacagttattttgggagggagggagta 103
|| || |||||||||||||||||| || |||||||||
Sbjct: 64 tacaatgttgagacagttattttgagacagagggagta 101
>RF00906;MIR1122;FJ184990.1/3303-3406 4565:Triticum aestivum (bread
wheat)
Length = 104
Score = 99.6 bits (50), Expect = 7e-21
Identities = 86/97 (88%), Gaps = 1/97 (1%)
Strand = Plus / Plus
Query: 7 tactccctccgtcctaaaataagtgtcttacggttagtacaattntatactagagctagt 66
|||||||||||||| ||||||||||||| | ||||||||||| |||||||||| ||||
Sbjct: 5 tactccctccgtcccaaaataagtgtctcaaccttagtacaattttatactagagttagt 64
Query: 67 ataaagttgagacagttattttgggagggagggagta 103
| |||| ||||||| ||||||||||| ||||||||||
Sbjct: 65 acaaag-tgagacacttattttgggacggagggagta 100
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 72 gttgagacagttattttgggagggagggagta 103
||||||||| ||||||||||| ||||||||||
Sbjct: 36 gttgagacacttattttgggacggagggagta 5
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 7 tactccctccgtcctaaaataagtgtct 34
|||||||||||||| |||||||||||||
Sbjct: 100 tactccctccgtcccaaaataagtgtct 73
>RF00906;MIR1122;DQ175992.1/50-154 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 99.6 bits (50), Expect = 7e-21
Identities = 85/97 (87%)
Strand = Plus / Plus
Query: 7 tactccctccgtcctaaaataagtgtcttacggttagtacaattntatactagagctagt 66
||||| |||||| |||||||||||||||| | |||||| |||| ||||||||||||||
Sbjct: 5 tactctctccgttttaaaataagtgtcttaagcttagtataattttatactagagctaga 64
Query: 67 ataaagttgagacagttattttgggagggagggagta 103
| |||||| ||||| ||||||||||| ||||||||||
Sbjct: 65 acaaagttaagacaattattttgggacggagggagta 101
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 7 tactccctccgtcctaaaataagtgtctta 36
|||||||||||||| ||||||| |||||||
Sbjct: 101 tactccctccgtcccaaaataattgtctta 72
>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 99.6 bits (50), Expect = 7e-21
Identities = 85/97 (87%)
Strand = Plus / Plus
Query: 7 tactccctccgtcctaaaataagtgtcttacggttagtacaattntatactagagctagt 66
|||||||||||||| ||||||||||||| | | ||||| |||| | ||||| |||||||
Sbjct: 5 tactccctccgtcccaaaataagtgtctcaagcttagtgtaattttgtactacagctagt 64
Query: 67 ataaagttgagacagttattttgggagggagggagta 103
| |||||||||||| ||||||||||| ||||||||||
Sbjct: 65 acaaagttgagacacttattttgggacggagggagta 101
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 7 tactccctccgtcctaaaataagtgtct 34
|||||||||||||| |||||||||||||
Sbjct: 101 tactccctccgtcccaaaataagtgtct 74
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 73 ttgagacagttattttgggagggagggagta 103
|||||||| ||||||||||| ||||||||||
Sbjct: 35 ttgagacacttattttgggacggagggagta 5
>RF00906;MIR1122;AY943294.1/62260-62364 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 93.7 bits (47), Expect = 4e-19
Identities = 85/98 (86%)
Strand = Plus / Plus
Query: 7 tactccctccgtcctaaaataagtgtcttacggttagtacaattntatactagagctagt 66
|||||||||||| | ||||||||||||||| | ||| ||||||| | ||||| | ||| |
Sbjct: 5 tactccctccgttccaaaataagtgtcttaagcttaatacaattttgtactaaatctaat 64
Query: 67 ataaagttgagacagttattttgggagggagggagtac 104
| |||||||||||||||||||||||| ||||| |||||
Sbjct: 65 acaaagttgagacagttattttgggacggaggaagtac 102
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 91.7 bits (46), Expect = 2e-18
Identities = 84/97 (86%)
Strand = Plus / Plus
Query: 7 tactccctccgtcctaaaataagtgtcttacggttagtacaattntatactagagctagt 66
|||||||||||||| ||||||||||||| | | ||||||||| | | ||||| || || |
Sbjct: 5 tactccctccgtcccaaaataagtgtctcaagcttagtacaactttgtactaaagttaat 64
Query: 67 ataaagttgagacagttattttgggagggagggagta 103
| |||||||||||| ||||||||||| ||||||||||
Sbjct: 65 acaaagttgagacatttattttgggacggagggagta 101
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 73 ttgagacagttattttgggagggagggagta 103
|||||||| ||||||||||| ||||||||||
Sbjct: 35 ttgagacacttattttgggacggagggagta 5
>RF00906;MIR1122;AJ400714.1/3663-3767 4565:Triticum aestivum (bread
wheat)
Length = 105
Score = 87.7 bits (44), Expect = 3e-17
Identities = 85/99 (85%)
Strand = Plus / Minus
Query: 7 tactccctccgtcctaaaataagtgtcttacggttagtacaattntatactagagctagt 66
|||||||||||||| ||||||||||||| | ||||||||| | | |||||||| ||||
Sbjct: 101 tactccctccgtcccaaaataagtgtctcaaccttagtacaactttgtactagagttagt 42
Query: 67 ataaagttgagacagttattttgggagggagggagtact 105
|||| |||||||| ||||||||||| ||| ||||||||
Sbjct: 41 gtaaaattgagacacttattttgggacggaaggagtact 3
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 72 gttgagacagttattttgggagggagggagta 103
||||||||| ||||||||||| ||||||||||
Sbjct: 70 gttgagacacttattttgggacggagggagta 101
>RF00906;MIR1122;DQ995510.1/1615-1718 4513:Hordeum vulgare
Length = 104
Score = 87.7 bits (44), Expect = 3e-17
Identities = 50/52 (96%)
Strand = Plus / Plus
Query: 54 tactagagctagtataaagttgagacagttattttgggagggagggagtact 105
|||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 51 tactagagctagtacaaagttgagacagttattttgggatggagggagtact 102
Score = 54.0 bits (27), Expect = 4e-07
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 69 aaagttgagacagttattttgggagggagggagta 103
||||||||||||||||||||| || ||||||||||
Sbjct: 39 aaagttgagacagttattttgagacggagggagta 5
>RF00906;MIR1122;AK249560.1/988-1092 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 85.7 bits (43), Expect = 1e-16
Identities = 84/98 (85%)
Strand = Plus / Minus
Query: 6 gtactccctccgtcctaaaataagtgtcttacggttagtacaattntatactagagctag 65
||||||||||||||| ||||||| ||||| | ||| ||||| | | ||||| ||||||
Sbjct: 102 gtactccctccgtcccaaaataactgtctcaaacttaatacaagtttgtactatagctag 43
Query: 66 tataaagttgagacagttattttgggagggagggagta 103
||||||||||||||| ||||||||||| ||| ||||||
Sbjct: 42 tataaagttgagacacttattttgggacggatggagta 5
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 73 ttgagacagttattttgggagggagggagtac 104
|||||||||||||||||||| |||||||||||
Sbjct: 71 ttgagacagttattttgggacggagggagtac 102
>RF00906;MIR1122;EU282771.1/632-528 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 85.7 bits (43), Expect = 1e-16
Identities = 84/98 (85%)
Strand = Plus / Plus
Query: 6 gtactccctccgtcctaaaataagtgtcttacggttagtacaattntatactagagctag 65
||||||||||||||| ||||||| | ||| | ||||||||| | ||||||||||||||
Sbjct: 4 gtactccctccgtcccaaaataactttctcaaacttagtacaactttatactagagctag 63
Query: 66 tataaagttgagacagttattttgggagggagggagta 103
| ||||||||||| | |||||||| || ||||||||||
Sbjct: 64 tgtaaagttgagatacttattttgagacggagggagta 101
Score = 50.1 bits (25), Expect = 6e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 73 ttgagacagttattttgggagggagggagtact 105
|||||| ||||||||||||| ||||||||||||
Sbjct: 35 ttgagaaagttattttgggacggagggagtact 3
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 83.8 bits (42), Expect = 4e-16
Identities = 83/97 (85%)
Strand = Plus / Plus
Query: 7 tactccctccgtcctaaaataagtgtcttacggttagtacaattntatactagagctagt 66
|||||||||||||| ||||||||||||| | | ||||||||| | ||||| || || |
Sbjct: 5 tactccctccgtcccaaaataagtgtctcaagcttagtacaaccttgtactaaagttaat 64
Query: 67 ataaagttgagacagttattttgggagggagggagta 103
| |||||||||||| ||||||||||| ||||||||||
Sbjct: 65 acaaagttgagacatttattttgggacggagggagta 101
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 73 ttgagacagttattttgggagggagggagta 103
|||||||| ||||||||||| ||||||||||
Sbjct: 35 ttgagacacttattttgggacggagggagta 5
>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
Length = 105
Score = 79.8 bits (40), Expect = 7e-15
Identities = 84/99 (84%)
Strand = Plus / Plus
Query: 6 gtactccctccgtcctaaaataagtgtcttacggttagtacaattntatactagagctag 65
|||||||||||||| ||||||||||||| | | |||||||| | | ||||| || |||
Sbjct: 4 gtactccctccgtctcaaaataagtgtctcaagcctagtacaactttgtactaaagttag 63
Query: 66 tataaagttgagacagttattttgggagggagggagtac 104
|| |||||| ||||| ||||||||||| |||||||||||
Sbjct: 64 tacaaagttaagacacttattttgggacggagggagtac 102
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 5 ggtactccctccgtcctaaaataagtgtctta 36
|||||||||||||||| |||||||||||||||
Sbjct: 103 ggtactccctccgtcccaaaataagtgtctta 72
>RF00906;MIR1122;EU282768.1/632-528 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 77.8 bits (39), Expect = 3e-14
Identities = 83/98 (84%)
Strand = Plus / Plus
Query: 6 gtactccctccgtcctaaaataagtgtcttacggttagtacaattntatactagagctag 65
||||||||||||||| ||||||| | ||| | ||||||||| | ||||||||||||||
Sbjct: 4 gtactccctccgtcccaaaataactttctcaaacttagtacaactttatactagagctag 63
Query: 66 tataaagttgagacagttattttgggagggagggagta 103
| ||||| ||||| | |||||||| || ||||||||||
Sbjct: 64 tgtaaagctgagatacttattttgagacggagggagta 101
Score = 50.1 bits (25), Expect = 6e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 73 ttgagacagttattttgggagggagggagtact 105
|||||| ||||||||||||| ||||||||||||
Sbjct: 35 ttgagaaagttattttgggacggagggagtact 3
>RF00906;MIR1122;AF474373.1/50497-50394 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 104
Score = 75.8 bits (38), Expect = 1e-13
Identities = 83/97 (85%), Gaps = 1/97 (1%)
Strand = Plus / Plus
Query: 7 tactccctccgtcctaaaataagtgtcttacggttagtacaattntatactagagctagt 66
||||| |||||||| ||||||| ||||| | | |||||||| | | ||||||| |||||
Sbjct: 5 tactcactccgtcccaaaataactgtctcaagcctagtacaactttgtactagaactagt 64
Query: 67 ataaagttgagacagttattttgggagggagggagta 103
| |||||||||||| ||||||||||| ||||||||||
Sbjct: 65 acaaagttgagacacttattttggga-ggagggagta 100
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 73 ttgagacagttattttgggagggagggagta 103
|||||||||||||||||||| |||| |||||
Sbjct: 35 ttgagacagttattttgggacggagtgagta 5
>RF00906;MIR1122;DQ445236.1/13423-13319 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 75.8 bits (38), Expect = 1e-13
Identities = 82/97 (84%)
Strand = Plus / Minus
Query: 7 tactccctccgtcctaaaataagtgtcttacggttagtacaattntatactagagctagt 66
|||||||||||| | ||||||| | ||| | | ||||||||| | | |||||||||||||
Sbjct: 101 tactccctccgttccaaaataactatctcaagcttagtacaactttgtactagagctagt 42
Query: 67 ataaagttgagacagttattttgggagggagggagta 103
| ||| |||||||| ||||||||| | ||||||||||
Sbjct: 41 acaaatttgagacacttattttggaacggagggagta 5
>RF00906;MIR1122;X83518.1/7301-7197 4513:Hordeum vulgare
Length = 105
Score = 75.8 bits (38), Expect = 1e-13
Identities = 82/97 (84%)
Strand = Plus / Plus
Query: 7 tactccctccgtcctaaaataagtgtcttacggttagtacaattntatactagagctagt 66
|||||||||| || ||||||| ||||| | | ||||||||| | | || ||||||||||
Sbjct: 5 tactccctccatctcaaaataactgtctcaagcttagtacaactttgtagtagagctagt 64
Query: 67 ataaagttgagacagttattttgggagggagggagta 103
| |||||||||||| ||||||||| || |||||||||
Sbjct: 65 acaaagttgagacacttattttggaagagagggagta 101
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 73 ttgagacagttattttgggagggagggagta 103
||||||||||||||||| || ||||||||||
Sbjct: 35 ttgagacagttattttgagatggagggagta 5
>RF00906;MIR1122;AK249748.1/2677-2573 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 73.8 bits (37), Expect = 4e-13
Identities = 84/100 (84%)
Strand = Plus / Minus
Query: 6 gtactccctccgtcctaaaataagtgtcttacggttagtacaattntatactagagctag 65
|||||||||||||| ||||||| ||||||| |||||| || | |||| || ||||||
Sbjct: 102 gtactccctccgtcgcaaaataaatgtcttaaacttagtataaatttatagtaaagctag 43
Query: 66 tataaagttgagacagttattttgggagggagggagtact 105
|| |||||| ||||||||||||||| | |||||||||||
Sbjct: 42 tacaaagttaagacagttattttggaacagagggagtact 3
>RF00906;MIR1122;AF488415.1/78603-78755 4568:Triticum monococcum
Length = 153
Score = 65.9 bits (33), Expect = 1e-10
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 40 ttagtacaattntatactagagctagtataaagttgagacagttattttgggagggaggg 99
||||||||| | | ||||| || ||||| ||| |||||||||||||||||||| ||||||
Sbjct: 86 ttagtacaactttgtactaaagttagtacaaacttgagacagttattttgggacggaggg 145
Query: 100 agta 103
||||
Sbjct: 146 agta 149
>RF00906;MIR1122;EU282770.1/593-711 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 119
Score = 65.9 bits (33), Expect = 1e-10
Identities = 56/64 (87%)
Strand = Plus / Minus
Query: 40 ttagtacaattntatactagagctagtataaagttgagacagttattttgggagggaggg 99
||||||||| | |||||||||||||| ||||||||||||| ||||||| || ||||||
Sbjct: 68 ttagtacaactttatactagagctagggtaaagttgagacacctattttgagacggaggg 9
Query: 100 agta 103
||||
Sbjct: 8 agta 5
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 77 gacagttattttgggagggagggagtact 105
|||||||||||||||| ||||||||||||
Sbjct: 89 gacagttattttgggacggagggagtact 117
>RF00906;MIR1122;AF521177.1/206122-206018 4513:Hordeum vulgare
Length = 105
Score = 65.9 bits (33), Expect = 1e-10
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 40 ttagtacaattntatactagagctagtataaagttgagacagttattttgggagggaggg 99
||||||||| | | |||||||||||||| |||||||||||| |||||||| | ||||||
Sbjct: 38 ttagtacaactttgtactagagctagtacaaagttgagacatttattttgaaacggaggg 97
Query: 100 agta 103
||||
Sbjct: 98 agta 101
>RF00906;MIR1122;AY821694.1/1308-1197 37674:Crithopsis delileana
Length = 112
Score = 65.9 bits (33), Expect = 1e-10
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 40 ttagtacaattntatactagagctagtataaagttgagacagttattttgggagggaggg 99
||||||||| | | ||||| || ||||| |||||||||||| ||||||||||| ||||||
Sbjct: 45 ttagtacaactttgtactaaagttagtacaaagttgagacacttattttgggatggaggg 104
Query: 100 agta 103
||||
Sbjct: 105 agta 108
>RF00906;MIR1122;DQ901436.1/1229-1333 4565:Triticum aestivum (bread
wheat)
Length = 105
Score = 63.9 bits (32), Expect = 4e-10
Identities = 44/48 (91%)
Strand = Plus / Minus
Query: 60 agctagtataaagttgagacagttattttgggagggagggagtacttt 107
|||||||| |||||||||||| ||||||||||| |||||||| |||||
Sbjct: 48 agctagtacaaagttgagacacttattttgggacggagggagcacttt 1
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 9 ctccctccgtcctaaaataagtgtct 34
|||||||||||| |||||||||||||
Sbjct: 7 ctccctccgtcccaaaataagtgtct 32
>RF00906;MIR1122;AY663392.1/117099-117203 4565:Triticum aestivum
(bread wheat)
Length = 105
Score = 60.0 bits (30), Expect = 6e-09
Identities = 80/97 (82%)
Strand = Plus / Plus
Query: 7 tactccctccgtcctaaaataagtgtcttacggttagtacaattntatactagagctagt 66
|||||| ||||| ||||||||||||||| | |||||| || | ||||||| ||||| |
Sbjct: 5 tactccttccgttctaaaataagtgtctcaatcttagtataactttatactaaagctaat 64
Query: 67 ataaagttgagacagttattttgggagggagggagta 103
| ||| || | ||| ||||||||||| ||||||||||
Sbjct: 65 acaaaattaacacacttattttgggatggagggagta 101
>RF00906;MIR1122;FJ477093.1/40908-41001 4513:Hordeum vulgare
Length = 94
Score = 58.0 bits (29), Expect = 2e-08
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 54 tactagagctagtataaagttgagacagttattttgggagggagggagtactt 106
||||| || ||||||||||||||| || ||| ||||||| |||||||||||||
Sbjct: 41 tactaaagttagtataaagttgagtcacttaatttgggacggagggagtactt 93
>RF00906;MIR1122;DQ900687.1/24296-24401 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 106
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 7 tactccctccgtcctaaaataagtgtc 33
|||||||||||||||||||||||||||
Sbjct: 102 tactccctccgtcctaaaataagtgtc 76
>RF01058;MIR806;AACV01007528.1/40785-40545 39947:Oryza sativa
Japonica Group
Length = 241
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 6 gtactccctccgtcctaaaataagtg 31
||||||||||||||||||||||||||
Sbjct: 241 gtactccctccgtcctaaaataagtg 216
>RF00906;MIR1122;AB183299.1/312-404 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 68 taaagttgagacagttattttgggagggagggag 101
||||||||||||| ||||||||||| ||||||||
Sbjct: 40 taaagttgagacacttattttgggacggagggag 7
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 9 ctccctccgtcctaaaataagtgtct 34
|||||||||||| |||||||||||||
Sbjct: 7 ctccctccgtcccaaaataagtgtct 32
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 70 aagttgagacagttattttgggagggagggagta 103
||||||||||| ||||||||||| ||||| ||||
Sbjct: 56 aagttgagacacttattttgggacggaggaagta 89
>RF00906;MIR1122;AF521177.1/81577-81474 4513:Hordeum vulgare
Length = 104
Score = 50.1 bits (25), Expect = 6e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 63 tagtataaagttgagacagttattttgggagggagggagta 103
||||| ||||||||| || ||||||||||| ||||||||||
Sbjct: 60 tagtacaaagttgagtcacttattttgggacggagggagta 100
>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
Length = 132
Score = 50.1 bits (25), Expect = 6e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 63 tagtataaagttgagacagttattttgggagggagggagta 103
||||| ||||||||| || ||||||||||| ||||||||||
Sbjct: 45 tagtacaaagttgagtcacttattttgggacggagggagta 5
Score = 44.1 bits (22), Expect = 4e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 63 tagtataaagttgagacagttattttgggagggagggagtac 104
||||| ||||||||| || ||||||||||| |||| ||||||
Sbjct: 88 tagtacaaagttgagtcacttattttgggatggagcgagtac 129
>RF00906;MIR1122;AACV01001520.1/25871-25960 39947:Oryza sativa
Japonica Group
Length = 90
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 79 cagttattttgggagggagggagtacttt 107
|||||||||||||| ||||||||||||||
Sbjct: 29 cagttattttgggacggagggagtacttt 1
>RF00906;MIR1122;U29095.1/333-439 4565:Triticum aestivum (bread
wheat)
Length = 107
Score = 48.1 bits (24), Expect = 2e-05
Identities = 39/43 (90%), Gaps = 2/43 (4%)
Strand = Plus / Minus
Query: 63 tagtataaagttgaga--cagttattttgggagggagggagta 103
|||||||||||||||| || ||||||||||| ||||||||||
Sbjct: 47 tagtataaagttgagatccacttattttgggacggagggagta 5
>RF00906;MIR1122;EU626553.1/80133-80237 4572:Triticum urartu
Length = 105
Score = 48.1 bits (24), Expect = 2e-05
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 63 tagtataaagttgagacagttattttgggagggagggagtactt 106
||||||||||||||| || |||||||| | |||||||||||||
Sbjct: 45 tagtataaagttgagtcatctattttggaacggagggagtactt 2
>RF00906;MIR1122;AK250735.1/291-376 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 7 tactccctccgtcctaaaataagtgtct 34
|||||||||||||| |||||||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgtct 32
Score = 44.1 bits (22), Expect = 4e-04
Identities = 38/42 (90%), Gaps = 1/42 (2%)
Strand = Plus / Minus
Query: 63 tagtataaagttg-agacagttattttgggagggagggagta 103
||||| ||||||| ||||| ||||||||||| ||||||||||
Sbjct: 46 tagtacaaagttggagacacttattttgggacggagggagta 5
>RF00906;MIR1122;AJ507395.1/7785-7899 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 115
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 5 ggtactccctccgtcctaaaataagtg 31
|||||||||||||||| ||||||||||
Sbjct: 113 ggtactccctccgtcccaaaataagtg 87
>RF00906;MIR1122;AJ234583.1/157-260 4513:Hordeum vulgare
Length = 104
Score = 46.1 bits (23), Expect = 9e-05
Identities = 80/98 (81%), Gaps = 1/98 (1%)
Strand = Plus / Minus
Query: 6 gtactccctccgtcctaaaataagtgtcttacggttagtacaattntatactagagctag 65
|||||||||||||| ||||||| ||||| | | |||||| || | | |||| ||||||
Sbjct: 101 gtactccctccgtctcaaaataattgtctcaagcttagtataactttgcacta-agctag 43
Query: 66 tataaagttgagacagttattttgggagggagggagta 103
|||||| || ||| | |||||||| || ||||||||||
Sbjct: 42 tataaaattaagaaacttattttgagacggagggagta 5
>RF00906;MIR1122;AK249769.1/2180-2285 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 106
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 7 tactccctccgtcctaaaataagtgtc 33
||||||||||||| |||||||||||||
Sbjct: 5 tactccctccgtcttaaaataagtgtc 31
>RF00906;MIR1122;EU282251.1/1314-1209 52152:Elymus repens
Length = 106
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 7 tactccctccgtcctaaaataagtgtc 33
|||||||||||||| ||||||||||||
Sbjct: 5 tactccctccgtcccaaaataagtgtc 31
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 7 tactccctccgtcctaaaataagtgtc 33
|||||||||||||| ||||||||||||
Sbjct: 102 tactccctccgtcccaaaataagtgtc 76
>RF00906;MIR1122;AP006526.2/71284-71151 39947:Oryza sativa Japonica
Group
Length = 134
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 80 agttattttgggagggagggagtactt 106
||||||||||||| |||||||||||||
Sbjct: 107 agttattttgggatggagggagtactt 133
>RF00906;MIR1122;AP003303.4/77673-77577 39947:Oryza sativa
Japonica Group
Length = 97
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 3 ttggtactccctccgtcctaaaataag 29
|||||||||||||||||| ||||||||
Sbjct: 97 ttggtactccctccgtcccaaaataag 71
>RF01058;MIR806;AACV01004692.1/2655-2900 39947:Oryza sativa
Japonica Group
Length = 246
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 6 gtactccctccgtcctaaaataagtg 31
||||||||||||||| ||||||||||
Sbjct: 1 gtactccctccgtcccaaaataagtg 26
>RF01058;MIR806;AL731615.4/103346-103100 39947:Oryza sativa
Japonica Group
Length = 247
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 7 tactccctccgtcctaaaataagtgt 32
|||||||||||||| |||||||||||
Sbjct: 2 tactccctccgtcccaaaataagtgt 27
>RF00906;MIR1122;AY268139.1/69673-69778 4513:Hordeum vulgare
Length = 106
Score = 44.1 bits (22), Expect = 4e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 66 tataaagttgagacagttattttgggagggagggagta 103
||||||||| |||||||||||||| || ||||| ||||
Sbjct: 65 tataaagttaagacagttattttgagacggaggaagta 102
>RF00906;MIR1122;AF181455.1/3108-2994 4513:Hordeum vulgare
Length = 115
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 6 gtactccctccgtcctaaaataagtg 31
||||||||||||||| ||||||||||
Sbjct: 112 gtactccctccgtcccaaaataagtg 87
>RF00906;MIR1122;AAAA02018804.1/15100-15261 39946:Oryza sativa
Indica Group
Length = 162
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 6 gtactccctccgtcctaaaata 27
||||||||||||||||||||||
Sbjct: 159 gtactccctccgtcctaaaata 138
>RF00906;MIR1122;AAAA02021832.1/90208-90105 39946:Oryza sativa
Indica Group
Length = 104
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 6 gtactccctccgtcctaaaata 27
||||||||||||||||||||||
Sbjct: 101 gtactccctccgtcctaaaata 80
>RF00906;MIR1122;FJ581044.1/175385-175266 4538:Oryza glaberrima
(African rice)
Length = 120
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 80 agttattttgggagggagggagtact 105
||||||||||||| ||||||||||||
Sbjct: 28 agttattttgggacggagggagtact 3
>RF00906;MIR1122;ABRL01001046.1/3877-3720 65489:Oryza barthii
Length = 158
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 tactccctccgtcctaaaataa 28
||||||||||||||||||||||
Sbjct: 5 tactccctccgtcctaaaataa 26
>RF00906;MIR1122;AAAA02035863.1/20568-20679 39946:Oryza sativa
Indica Group
Length = 112
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 gtactccctccgtcctaaaata 27
||||||||||||||||||||||
Sbjct: 4 gtactccctccgtcctaaaata 25
>RF00906;MIR1122;AP002901.2/60176-60097 39947:Oryza sativa
Japonica Group
Length = 80
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 gtactccctccgtcctaaaata 27
||||||||||||||||||||||
Sbjct: 4 gtactccctccgtcctaaaata 25
>RF00906;MIR1122;AACV01006869.1/7572-7699 39947:Oryza sativa
Japonica Group
Length = 128
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 gtactccctccgtcctaaaata 27
||||||||||||||||||||||
Sbjct: 4 gtactccctccgtcctaaaata 25
>RF00906;MIR1122;AAAA02010499.1/21534-21382 39946:Oryza sativa
Indica Group
Length = 153
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 7 tactccctccgtcctaaaataa 28
||||||||||||||||||||||
Sbjct: 149 tactccctccgtcctaaaataa 128
>RF00906;MIR1122;AP008218.1/18423778-18423640 39947:Oryza sativa
Japonica Group
Length = 139
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 6 gtactccctccgtcctaaaata 27
||||||||||||||||||||||
Sbjct: 136 gtactccctccgtcctaaaata 115
>RF00906;MIR1122;AP003508.3/31246-31125 39947:Oryza sativa
Japonica Group
Length = 122
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 tactccctccgtcctaaaataa 28
||||||||||||||||||||||
Sbjct: 5 tactccctccgtcctaaaataa 26