miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU593539.1/914-1018 4513:Hordeum vulgare
          Length = 105

 Score =  123 bits (62), Expect = 5e-28
 Identities = 88/97 (90%)
 Strand = Plus / Plus

                                                                       
Query: 7   tactccctccgtcctaaaataagtgtcttacggttagtacaattntatactagagctagt 66
           |||||||||||||| ||||||| ||||||| | |||||| || | ||||||||| |||||
Sbjct: 5   tactccctccgtcccaaaataactgtcttaagcttagtataaatttatactagatctagt 64

                                                
Query: 67  ataaagttgagacagttattttgggagggagggagta 103
           |||||||||||||||||||||||||| ||||||||||
Sbjct: 65  ataaagttgagacagttattttgggacggagggagta 101



 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 76  agacagttattttgggagggagggagta 103
           ||||||||||||||||| ||||||||||
Sbjct: 32  agacagttattttgggacggagggagta 5




>RF00906;MIR1122;AY133251.1/901-1005 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 105

 Score =  117 bits (59), Expect = 3e-26
 Identities = 88/98 (89%)
 Strand = Plus / Plus

                                                                       
Query: 7   tactccctccgtcctaaaataagtgtcttacggttagtacaattntatactagagctagt 66
           |||||||||||| | ||||||||||||||  |  |||||||||| | |||||||||||||
Sbjct: 5   tactccctccgttccaaaataagtgtcttgagcgtagtacaattttgtactagagctagt 64

                                                 
Query: 67  ataaagttgagacagttattttgggagggagggagtac 104
           | |||||||||||||||||||||||| |||||||||||
Sbjct: 65  acaaagttgagacagttattttgggacggagggagtac 102




>RF00906;MIR1122;DQ445238.1/5626-5730 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 105

 Score =  115 bits (58), Expect = 1e-25
 Identities = 87/97 (89%)
 Strand = Plus / Plus

                                                                       
Query: 7   tactccctccgtcctaaaataagtgtcttacggttagtacaattntatactagagctagt 66
           |||||||||||||| ||||||| ||||||| | |||||| || | |||| |||| |||||
Sbjct: 5   tactccctccgtcccaaaataactgtcttaagcttagtataaatttatattagatctagt 64

                                                
Query: 67  ataaagttgagacagttattttgggagggagggagta 103
           |||||||||||||||||||||||||| ||||||||||
Sbjct: 65  ataaagttgagacagttattttgggacggagggagta 101



 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 76  agacagttattttgggagggagggagta 103
           ||||||||||||||||| ||||||||||
Sbjct: 32  agacagttattttgggacggagggagta 5




>RF00906;MIR1122;AJ249141.1/1014-910 4513:Hordeum vulgare
          Length = 105

 Score =  109 bits (55), Expect = 7e-24
 Identities = 84/94 (89%)
 Strand = Plus / Plus

                                                                       
Query: 10  tccctccgtcctaaaataagtgtcttacggttagtacaattntatactagagctagtata 69
           |||||| |||||||||||||||||||| | ||||||||| | | ||||||||||| || |
Sbjct: 8   tccctcggtcctaaaataagtgtcttaagcttagtacaactttgtactagagctaataca 67

                                             
Query: 70  aagttgagacagttattttgggagggagggagta 103
           |||||||||||||||||||| || ||||||||||
Sbjct: 68  aagttgagacagttattttgagacggagggagta 101




>RF00906;MIR1122;AK252392.1/1279-1175 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 105

 Score =  107 bits (54), Expect = 3e-23
 Identities = 83/93 (89%)
 Strand = Plus / Plus

                                                                       
Query: 11  ccctccgtcctaaaataagtgtcttacggttagtacaattntatactagagctagtataa 70
           |||||||||| ||||||||||||||| | ||||||||||| |||||  ||||||||| ||
Sbjct: 9   ccctccgtcccaaaataagtgtcttaagcttagtacaattttatacatgagctagtacaa 68

                                            
Query: 71  agttgagacagttattttgggagggagggagta 103
           |||| |||||| |||||||||| ||||||||||
Sbjct: 69  agttaagacagatattttgggacggagggagta 101




>RF00906;MIR1122;DQ871219.1/106890-106994 85692:Triticum turgidum
           subsp. dicoccoides
          Length = 105

 Score =  101 bits (51), Expect = 2e-21
 Identities = 86/98 (87%)
 Strand = Plus / Plus

                                                                       
Query: 7   tactccctccgtcctaaaataagtgtcttacggttagtacaattntatactagagctagt 66
           |||||||||||||| ||||||||||||||  | |||||| || | | |||||||| ||||
Sbjct: 5   tactccctccgtcccaaaataagtgtcttgagcttagtaaaaatttgtactagagatagt 64

                                                 
Query: 67  ataaagttgagacagttattttgggagggagggagtac 104
           | |||||||||||| ||||||||||| |||||||||||
Sbjct: 65  acaaagttgagacacttattttgggatggagggagtac 102




>RF00906;MIR1122;AJ234485.1/114-218 4513:Hordeum vulgare
          Length = 105

 Score =  101 bits (51), Expect = 2e-21
 Identities = 86/98 (87%)
 Strand = Plus / Plus

                                                                       
Query: 6   gtactccctccgtcctaaaataagtgtcttacggttagtacaattntatactagagctag 65
           ||||||||||||||  |||||||||||||||   ||||||||||| | ||||||||||||
Sbjct: 4   gtactccctccgtctcaaaataagtgtcttaatcttagtacaattttgtactagagctag 63

                                                 
Query: 66  tataaagttgagacagttattttgggagggagggagta 103
           || || |||||||||||||||||| ||  |||||||||
Sbjct: 64  tacaatgttgagacagttattttgagacagagggagta 101




>RF00906;MIR1122;FJ184990.1/3303-3406 4565:Triticum aestivum (bread
           wheat)
          Length = 104

 Score = 99.6 bits (50), Expect = 7e-21
 Identities = 86/97 (88%), Gaps = 1/97 (1%)
 Strand = Plus / Plus

                                                                       
Query: 7   tactccctccgtcctaaaataagtgtcttacggttagtacaattntatactagagctagt 66
           |||||||||||||| ||||||||||||| |   ||||||||||| |||||||||| ||||
Sbjct: 5   tactccctccgtcccaaaataagtgtctcaaccttagtacaattttatactagagttagt 64

                                                
Query: 67  ataaagttgagacagttattttgggagggagggagta 103
           | |||| ||||||| ||||||||||| ||||||||||
Sbjct: 65  acaaag-tgagacacttattttgggacggagggagta 100



 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 72  gttgagacagttattttgggagggagggagta 103
           ||||||||| ||||||||||| ||||||||||
Sbjct: 36  gttgagacacttattttgggacggagggagta 5



 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 7   tactccctccgtcctaaaataagtgtct 34
           |||||||||||||| |||||||||||||
Sbjct: 100 tactccctccgtcccaaaataagtgtct 73




>RF00906;MIR1122;DQ175992.1/50-154 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 105

 Score = 99.6 bits (50), Expect = 7e-21
 Identities = 85/97 (87%)
 Strand = Plus / Plus

                                                                       
Query: 7   tactccctccgtcctaaaataagtgtcttacggttagtacaattntatactagagctagt 66
           ||||| ||||||  |||||||||||||||| | |||||| |||| |||||||||||||| 
Sbjct: 5   tactctctccgttttaaaataagtgtcttaagcttagtataattttatactagagctaga 64

                                                
Query: 67  ataaagttgagacagttattttgggagggagggagta 103
           | |||||| ||||| ||||||||||| ||||||||||
Sbjct: 65  acaaagttaagacaattattttgggacggagggagta 101



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 7   tactccctccgtcctaaaataagtgtctta 36
           |||||||||||||| ||||||| |||||||
Sbjct: 101 tactccctccgtcccaaaataattgtctta 72




>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 105

 Score = 99.6 bits (50), Expect = 7e-21
 Identities = 85/97 (87%)
 Strand = Plus / Plus

                                                                       
Query: 7   tactccctccgtcctaaaataagtgtcttacggttagtacaattntatactagagctagt 66
           |||||||||||||| ||||||||||||| | | |||||  |||| | ||||| |||||||
Sbjct: 5   tactccctccgtcccaaaataagtgtctcaagcttagtgtaattttgtactacagctagt 64

                                                
Query: 67  ataaagttgagacagttattttgggagggagggagta 103
           | |||||||||||| ||||||||||| ||||||||||
Sbjct: 65  acaaagttgagacacttattttgggacggagggagta 101



 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 7   tactccctccgtcctaaaataagtgtct 34
           |||||||||||||| |||||||||||||
Sbjct: 101 tactccctccgtcccaaaataagtgtct 74



 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 73  ttgagacagttattttgggagggagggagta 103
           |||||||| ||||||||||| ||||||||||
Sbjct: 35  ttgagacacttattttgggacggagggagta 5




>RF00906;MIR1122;AY943294.1/62260-62364 112509:Hordeum vulgare
           subsp. vulgare (domesticated barley)
          Length = 105

 Score = 93.7 bits (47), Expect = 4e-19
 Identities = 85/98 (86%)
 Strand = Plus / Plus

                                                                       
Query: 7   tactccctccgtcctaaaataagtgtcttacggttagtacaattntatactagagctagt 66
           |||||||||||| | ||||||||||||||| | ||| ||||||| | ||||| | ||| |
Sbjct: 5   tactccctccgttccaaaataagtgtcttaagcttaatacaattttgtactaaatctaat 64

                                                 
Query: 67  ataaagttgagacagttattttgggagggagggagtac 104
           | |||||||||||||||||||||||| ||||| |||||
Sbjct: 65  acaaagttgagacagttattttgggacggaggaagtac 102




>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
          Length = 105

 Score = 91.7 bits (46), Expect = 2e-18
 Identities = 84/97 (86%)
 Strand = Plus / Plus

                                                                       
Query: 7   tactccctccgtcctaaaataagtgtcttacggttagtacaattntatactagagctagt 66
           |||||||||||||| ||||||||||||| | | ||||||||| | | ||||| || || |
Sbjct: 5   tactccctccgtcccaaaataagtgtctcaagcttagtacaactttgtactaaagttaat 64

                                                
Query: 67  ataaagttgagacagttattttgggagggagggagta 103
           | |||||||||||| ||||||||||| ||||||||||
Sbjct: 65  acaaagttgagacatttattttgggacggagggagta 101



 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 73  ttgagacagttattttgggagggagggagta 103
           |||||||| ||||||||||| ||||||||||
Sbjct: 35  ttgagacacttattttgggacggagggagta 5




>RF00906;MIR1122;AJ400714.1/3663-3767 4565:Triticum aestivum (bread
           wheat)
          Length = 105

 Score = 87.7 bits (44), Expect = 3e-17
 Identities = 85/99 (85%)
 Strand = Plus / Minus

                                                                       
Query: 7   tactccctccgtcctaaaataagtgtcttacggttagtacaattntatactagagctagt 66
           |||||||||||||| ||||||||||||| |   ||||||||| | | |||||||| ||||
Sbjct: 101 tactccctccgtcccaaaataagtgtctcaaccttagtacaactttgtactagagttagt 42

                                                  
Query: 67  ataaagttgagacagttattttgggagggagggagtact 105
            |||| |||||||| ||||||||||| ||| ||||||||
Sbjct: 41  gtaaaattgagacacttattttgggacggaaggagtact 3



 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 72  gttgagacagttattttgggagggagggagta 103
           ||||||||| ||||||||||| ||||||||||
Sbjct: 70  gttgagacacttattttgggacggagggagta 101




>RF00906;MIR1122;DQ995510.1/1615-1718 4513:Hordeum vulgare
          Length = 104

 Score = 87.7 bits (44), Expect = 3e-17
 Identities = 50/52 (96%)
 Strand = Plus / Plus

                                                               
Query: 54  tactagagctagtataaagttgagacagttattttgggagggagggagtact 105
           |||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 51  tactagagctagtacaaagttgagacagttattttgggatggagggagtact 102



 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                              
Query: 69  aaagttgagacagttattttgggagggagggagta 103
           ||||||||||||||||||||| || ||||||||||
Sbjct: 39  aaagttgagacagttattttgagacggagggagta 5




>RF00906;MIR1122;AK249560.1/988-1092 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 105

 Score = 85.7 bits (43), Expect = 1e-16
 Identities = 84/98 (85%)
 Strand = Plus / Minus

                                                                       
Query: 6   gtactccctccgtcctaaaataagtgtcttacggttagtacaattntatactagagctag 65
           ||||||||||||||| ||||||| ||||| |   ||| ||||| | | ||||| ||||||
Sbjct: 102 gtactccctccgtcccaaaataactgtctcaaacttaatacaagtttgtactatagctag 43

                                                 
Query: 66  tataaagttgagacagttattttgggagggagggagta 103
           ||||||||||||||| ||||||||||| ||| ||||||
Sbjct: 42  tataaagttgagacacttattttgggacggatggagta 5



 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 73  ttgagacagttattttgggagggagggagtac 104
           |||||||||||||||||||| |||||||||||
Sbjct: 71  ttgagacagttattttgggacggagggagtac 102




>RF00906;MIR1122;EU282771.1/632-528 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 105

 Score = 85.7 bits (43), Expect = 1e-16
 Identities = 84/98 (85%)
 Strand = Plus / Plus

                                                                       
Query: 6   gtactccctccgtcctaaaataagtgtcttacggttagtacaattntatactagagctag 65
           ||||||||||||||| ||||||| | ||| |   ||||||||| | ||||||||||||||
Sbjct: 4   gtactccctccgtcccaaaataactttctcaaacttagtacaactttatactagagctag 63

                                                 
Query: 66  tataaagttgagacagttattttgggagggagggagta 103
           | ||||||||||| | |||||||| || ||||||||||
Sbjct: 64  tgtaaagttgagatacttattttgagacggagggagta 101



 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 73  ttgagacagttattttgggagggagggagtact 105
           |||||| ||||||||||||| ||||||||||||
Sbjct: 35  ttgagaaagttattttgggacggagggagtact 3




>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
          Length = 105

 Score = 83.8 bits (42), Expect = 4e-16
 Identities = 83/97 (85%)
 Strand = Plus / Plus

                                                                       
Query: 7   tactccctccgtcctaaaataagtgtcttacggttagtacaattntatactagagctagt 66
           |||||||||||||| ||||||||||||| | | |||||||||   | ||||| || || |
Sbjct: 5   tactccctccgtcccaaaataagtgtctcaagcttagtacaaccttgtactaaagttaat 64

                                                
Query: 67  ataaagttgagacagttattttgggagggagggagta 103
           | |||||||||||| ||||||||||| ||||||||||
Sbjct: 65  acaaagttgagacatttattttgggacggagggagta 101



 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 73  ttgagacagttattttgggagggagggagta 103
           |||||||| ||||||||||| ||||||||||
Sbjct: 35  ttgagacacttattttgggacggagggagta 5




>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
          Length = 105

 Score = 79.8 bits (40), Expect = 7e-15
 Identities = 84/99 (84%)
 Strand = Plus / Plus

                                                                       
Query: 6   gtactccctccgtcctaaaataagtgtcttacggttagtacaattntatactagagctag 65
           ||||||||||||||  ||||||||||||| | |  |||||||| | | ||||| || |||
Sbjct: 4   gtactccctccgtctcaaaataagtgtctcaagcctagtacaactttgtactaaagttag 63

                                                  
Query: 66  tataaagttgagacagttattttgggagggagggagtac 104
           || |||||| ||||| ||||||||||| |||||||||||
Sbjct: 64  tacaaagttaagacacttattttgggacggagggagtac 102



 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                           
Query: 5   ggtactccctccgtcctaaaataagtgtctta 36
           |||||||||||||||| |||||||||||||||
Sbjct: 103 ggtactccctccgtcccaaaataagtgtctta 72




>RF00906;MIR1122;EU282768.1/632-528 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 105

 Score = 77.8 bits (39), Expect = 3e-14
 Identities = 83/98 (84%)
 Strand = Plus / Plus

                                                                       
Query: 6   gtactccctccgtcctaaaataagtgtcttacggttagtacaattntatactagagctag 65
           ||||||||||||||| ||||||| | ||| |   ||||||||| | ||||||||||||||
Sbjct: 4   gtactccctccgtcccaaaataactttctcaaacttagtacaactttatactagagctag 63

                                                 
Query: 66  tataaagttgagacagttattttgggagggagggagta 103
           | ||||| ||||| | |||||||| || ||||||||||
Sbjct: 64  tgtaaagctgagatacttattttgagacggagggagta 101



 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 73  ttgagacagttattttgggagggagggagtact 105
           |||||| ||||||||||||| ||||||||||||
Sbjct: 35  ttgagaaagttattttgggacggagggagtact 3




>RF00906;MIR1122;AF474373.1/50497-50394 112509:Hordeum vulgare
           subsp. vulgare (domesticated barley)
          Length = 104

 Score = 75.8 bits (38), Expect = 1e-13
 Identities = 83/97 (85%), Gaps = 1/97 (1%)
 Strand = Plus / Plus

                                                                       
Query: 7   tactccctccgtcctaaaataagtgtcttacggttagtacaattntatactagagctagt 66
           ||||| |||||||| ||||||| ||||| | |  |||||||| | | ||||||| |||||
Sbjct: 5   tactcactccgtcccaaaataactgtctcaagcctagtacaactttgtactagaactagt 64

                                                
Query: 67  ataaagttgagacagttattttgggagggagggagta 103
           | |||||||||||| ||||||||||| ||||||||||
Sbjct: 65  acaaagttgagacacttattttggga-ggagggagta 100



 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 73  ttgagacagttattttgggagggagggagta 103
           |||||||||||||||||||| |||| |||||
Sbjct: 35  ttgagacagttattttgggacggagtgagta 5




>RF00906;MIR1122;DQ445236.1/13423-13319 112509:Hordeum vulgare
           subsp. vulgare (domesticated barley)
          Length = 105

 Score = 75.8 bits (38), Expect = 1e-13
 Identities = 82/97 (84%)
 Strand = Plus / Minus

                                                                       
Query: 7   tactccctccgtcctaaaataagtgtcttacggttagtacaattntatactagagctagt 66
           |||||||||||| | ||||||| | ||| | | ||||||||| | | |||||||||||||
Sbjct: 101 tactccctccgttccaaaataactatctcaagcttagtacaactttgtactagagctagt 42

                                                
Query: 67  ataaagttgagacagttattttgggagggagggagta 103
           | ||| |||||||| ||||||||| | ||||||||||
Sbjct: 41  acaaatttgagacacttattttggaacggagggagta 5




>RF00906;MIR1122;X83518.1/7301-7197 4513:Hordeum vulgare
          Length = 105

 Score = 75.8 bits (38), Expect = 1e-13
 Identities = 82/97 (84%)
 Strand = Plus / Plus

                                                                       
Query: 7   tactccctccgtcctaaaataagtgtcttacggttagtacaattntatactagagctagt 66
           |||||||||| ||  ||||||| ||||| | | ||||||||| | | || ||||||||||
Sbjct: 5   tactccctccatctcaaaataactgtctcaagcttagtacaactttgtagtagagctagt 64

                                                
Query: 67  ataaagttgagacagttattttgggagggagggagta 103
           | |||||||||||| ||||||||| || |||||||||
Sbjct: 65  acaaagttgagacacttattttggaagagagggagta 101



 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 73  ttgagacagttattttgggagggagggagta 103
           ||||||||||||||||| || ||||||||||
Sbjct: 35  ttgagacagttattttgagatggagggagta 5




>RF00906;MIR1122;AK249748.1/2677-2573 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 105

 Score = 73.8 bits (37), Expect = 4e-13
 Identities = 84/100 (84%)
 Strand = Plus / Minus

                                                                       
Query: 6   gtactccctccgtcctaaaataagtgtcttacggttagtacaattntatactagagctag 65
           ||||||||||||||  ||||||| |||||||   |||||| || | |||| || ||||||
Sbjct: 102 gtactccctccgtcgcaaaataaatgtcttaaacttagtataaatttatagtaaagctag 43

                                                   
Query: 66  tataaagttgagacagttattttgggagggagggagtact 105
           || |||||| ||||||||||||||| |  |||||||||||
Sbjct: 42  tacaaagttaagacagttattttggaacagagggagtact 3




>RF00906;MIR1122;AF488415.1/78603-78755 4568:Triticum monococcum
          Length = 153

 Score = 65.9 bits (33), Expect = 1e-10
 Identities = 56/64 (87%)
 Strand = Plus / Plus

                                                                       
Query: 40  ttagtacaattntatactagagctagtataaagttgagacagttattttgggagggaggg 99
           ||||||||| | | ||||| || ||||| ||| |||||||||||||||||||| ||||||
Sbjct: 86  ttagtacaactttgtactaaagttagtacaaacttgagacagttattttgggacggaggg 145

               
Query: 100 agta 103
           ||||
Sbjct: 146 agta 149




>RF00906;MIR1122;EU282770.1/593-711 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 119

 Score = 65.9 bits (33), Expect = 1e-10
 Identities = 56/64 (87%)
 Strand = Plus / Minus

                                                                       
Query: 40  ttagtacaattntatactagagctagtataaagttgagacagttattttgggagggaggg 99
           ||||||||| | ||||||||||||||  |||||||||||||  ||||||| || ||||||
Sbjct: 68  ttagtacaactttatactagagctagggtaaagttgagacacctattttgagacggaggg 9

               
Query: 100 agta 103
           ||||
Sbjct: 8   agta 5



 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 77  gacagttattttgggagggagggagtact 105
           |||||||||||||||| ||||||||||||
Sbjct: 89  gacagttattttgggacggagggagtact 117




>RF00906;MIR1122;AF521177.1/206122-206018 4513:Hordeum vulgare
          Length = 105

 Score = 65.9 bits (33), Expect = 1e-10
 Identities = 56/64 (87%)
 Strand = Plus / Plus

                                                                       
Query: 40  ttagtacaattntatactagagctagtataaagttgagacagttattttgggagggaggg 99
           ||||||||| | | |||||||||||||| |||||||||||| ||||||||  | ||||||
Sbjct: 38  ttagtacaactttgtactagagctagtacaaagttgagacatttattttgaaacggaggg 97

               
Query: 100 agta 103
           ||||
Sbjct: 98  agta 101




>RF00906;MIR1122;AY821694.1/1308-1197 37674:Crithopsis delileana
          Length = 112

 Score = 65.9 bits (33), Expect = 1e-10
 Identities = 56/64 (87%)
 Strand = Plus / Plus

                                                                       
Query: 40  ttagtacaattntatactagagctagtataaagttgagacagttattttgggagggaggg 99
           ||||||||| | | ||||| || ||||| |||||||||||| ||||||||||| ||||||
Sbjct: 45  ttagtacaactttgtactaaagttagtacaaagttgagacacttattttgggatggaggg 104

               
Query: 100 agta 103
           ||||
Sbjct: 105 agta 108




>RF00906;MIR1122;DQ901436.1/1229-1333 4565:Triticum aestivum (bread
           wheat)
          Length = 105

 Score = 63.9 bits (32), Expect = 4e-10
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                           
Query: 60  agctagtataaagttgagacagttattttgggagggagggagtacttt 107
           |||||||| |||||||||||| ||||||||||| |||||||| |||||
Sbjct: 48  agctagtacaaagttgagacacttattttgggacggagggagcacttt 1



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 9  ctccctccgtcctaaaataagtgtct 34
          |||||||||||| |||||||||||||
Sbjct: 7  ctccctccgtcccaaaataagtgtct 32




>RF00906;MIR1122;AY663392.1/117099-117203 4565:Triticum aestivum
           (bread wheat)
          Length = 105

 Score = 60.0 bits (30), Expect = 6e-09
 Identities = 80/97 (82%)
 Strand = Plus / Plus

                                                                       
Query: 7   tactccctccgtcctaaaataagtgtcttacggttagtacaattntatactagagctagt 66
           |||||| ||||| ||||||||||||||| |   |||||| || | ||||||| ||||| |
Sbjct: 5   tactccttccgttctaaaataagtgtctcaatcttagtataactttatactaaagctaat 64

                                                
Query: 67  ataaagttgagacagttattttgggagggagggagta 103
           | ||| || | ||| ||||||||||| ||||||||||
Sbjct: 65  acaaaattaacacacttattttgggatggagggagta 101




>RF00906;MIR1122;FJ477093.1/40908-41001 4513:Hordeum vulgare
          Length = 94

 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                
Query: 54  tactagagctagtataaagttgagacagttattttgggagggagggagtactt 106
           ||||| || ||||||||||||||| || ||| ||||||| |||||||||||||
Sbjct: 41  tactaaagttagtataaagttgagtcacttaatttgggacggagggagtactt 93




>RF00906;MIR1122;DQ900687.1/24296-24401 112509:Hordeum vulgare
           subsp. vulgare (domesticated barley)
          Length = 106

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                      
Query: 7   tactccctccgtcctaaaataagtgtc 33
           |||||||||||||||||||||||||||
Sbjct: 102 tactccctccgtcctaaaataagtgtc 76




>RF01058;MIR806;AACV01007528.1/40785-40545 39947:Oryza sativa
           Japonica Group
          Length = 241

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 6   gtactccctccgtcctaaaataagtg 31
           ||||||||||||||||||||||||||
Sbjct: 241 gtactccctccgtcctaaaataagtg 216




>RF00906;MIR1122;AB183299.1/312-404 4565:Triticum aestivum (bread
           wheat)
          Length = 93

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                             
Query: 68  taaagttgagacagttattttgggagggagggag 101
           ||||||||||||| ||||||||||| ||||||||
Sbjct: 40  taaagttgagacacttattttgggacggagggag 7



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 9  ctccctccgtcctaaaataagtgtct 34
          |||||||||||| |||||||||||||
Sbjct: 7  ctccctccgtcccaaaataagtgtct 32



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 70  aagttgagacagttattttgggagggagggagta 103
           ||||||||||| ||||||||||| ||||| ||||
Sbjct: 56  aagttgagacacttattttgggacggaggaagta 89




>RF00906;MIR1122;AF521177.1/81577-81474 4513:Hordeum vulgare
          Length = 104

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                    
Query: 63  tagtataaagttgagacagttattttgggagggagggagta 103
           ||||| ||||||||| || ||||||||||| ||||||||||
Sbjct: 60  tagtacaaagttgagtcacttattttgggacggagggagta 100




>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
          Length = 132

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 63  tagtataaagttgagacagttattttgggagggagggagta 103
           ||||| ||||||||| || ||||||||||| ||||||||||
Sbjct: 45  tagtacaaagttgagtcacttattttgggacggagggagta 5



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                     
Query: 63  tagtataaagttgagacagttattttgggagggagggagtac 104
           ||||| ||||||||| || ||||||||||| |||| ||||||
Sbjct: 88  tagtacaaagttgagtcacttattttgggatggagcgagtac 129




>RF00906;MIR1122;AACV01001520.1/25871-25960 39947:Oryza sativa
           Japonica Group
          Length = 90

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 79  cagttattttgggagggagggagtacttt 107
           |||||||||||||| ||||||||||||||
Sbjct: 29  cagttattttgggacggagggagtacttt 1




>RF00906;MIR1122;U29095.1/333-439 4565:Triticum aestivum (bread
           wheat)
          Length = 107

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 39/43 (90%), Gaps = 2/43 (4%)
 Strand = Plus / Minus

                                                      
Query: 63  tagtataaagttgaga--cagttattttgggagggagggagta 103
           ||||||||||||||||  || ||||||||||| ||||||||||
Sbjct: 47  tagtataaagttgagatccacttattttgggacggagggagta 5




>RF00906;MIR1122;EU626553.1/80133-80237 4572:Triticum urartu
          Length = 105

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                       
Query: 63  tagtataaagttgagacagttattttgggagggagggagtactt 106
           ||||||||||||||| ||  |||||||| | |||||||||||||
Sbjct: 45  tagtataaagttgagtcatctattttggaacggagggagtactt 2




>RF00906;MIR1122;AK250735.1/291-376 112509:Hordeum vulgare subsp.
          vulgare (domesticated barley)
          Length = 86

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 7  tactccctccgtcctaaaataagtgtct 34
          |||||||||||||| |||||||||||||
Sbjct: 5  tactccctccgtcccaaaataagtgtct 32



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 38/42 (90%), Gaps = 1/42 (2%)
 Strand = Plus / Minus

                                                     
Query: 63  tagtataaagttg-agacagttattttgggagggagggagta 103
           ||||| ||||||| ||||| ||||||||||| ||||||||||
Sbjct: 46  tagtacaaagttggagacacttattttgggacggagggagta 5




>RF00906;MIR1122;AJ507395.1/7785-7899 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 115

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 5   ggtactccctccgtcctaaaataagtg 31
           |||||||||||||||| ||||||||||
Sbjct: 113 ggtactccctccgtcccaaaataagtg 87




>RF00906;MIR1122;AJ234583.1/157-260 4513:Hordeum vulgare
          Length = 104

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 80/98 (81%), Gaps = 1/98 (1%)
 Strand = Plus / Minus

                                                                       
Query: 6   gtactccctccgtcctaaaataagtgtcttacggttagtacaattntatactagagctag 65
           ||||||||||||||  ||||||| ||||| | | |||||| || | |  |||| ||||||
Sbjct: 101 gtactccctccgtctcaaaataattgtctcaagcttagtataactttgcacta-agctag 43

                                                 
Query: 66  tataaagttgagacagttattttgggagggagggagta 103
           |||||| || ||| | |||||||| || ||||||||||
Sbjct: 42  tataaaattaagaaacttattttgagacggagggagta 5




>RF00906;MIR1122;AK249769.1/2180-2285 112509:Hordeum vulgare
          subsp. vulgare (domesticated barley)
          Length = 106

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 7  tactccctccgtcctaaaataagtgtc 33
          ||||||||||||| |||||||||||||
Sbjct: 5  tactccctccgtcttaaaataagtgtc 31




>RF00906;MIR1122;EU282251.1/1314-1209 52152:Elymus repens
          Length = 106

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 7  tactccctccgtcctaaaataagtgtc 33
          |||||||||||||| ||||||||||||
Sbjct: 5  tactccctccgtcccaaaataagtgtc 31



 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 7   tactccctccgtcctaaaataagtgtc 33
           |||||||||||||| ||||||||||||
Sbjct: 102 tactccctccgtcccaaaataagtgtc 76




>RF00906;MIR1122;AP006526.2/71284-71151 39947:Oryza sativa Japonica
           Group
          Length = 134

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 80  agttattttgggagggagggagtactt 106
           ||||||||||||| |||||||||||||
Sbjct: 107 agttattttgggatggagggagtactt 133




>RF00906;MIR1122;AP003303.4/77673-77577 39947:Oryza sativa
          Japonica Group
          Length = 97

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                     
Query: 3  ttggtactccctccgtcctaaaataag 29
          |||||||||||||||||| ||||||||
Sbjct: 97 ttggtactccctccgtcccaaaataag 71




>RF01058;MIR806;AACV01004692.1/2655-2900 39947:Oryza sativa
          Japonica Group
          Length = 246

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 6  gtactccctccgtcctaaaataagtg 31
          ||||||||||||||| ||||||||||
Sbjct: 1  gtactccctccgtcccaaaataagtg 26




>RF01058;MIR806;AL731615.4/103346-103100 39947:Oryza sativa
          Japonica Group
          Length = 247

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 7  tactccctccgtcctaaaataagtgt 32
          |||||||||||||| |||||||||||
Sbjct: 2  tactccctccgtcccaaaataagtgt 27




>RF00906;MIR1122;AY268139.1/69673-69778 4513:Hordeum vulgare
          Length = 106

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 66  tataaagttgagacagttattttgggagggagggagta 103
           ||||||||| |||||||||||||| || ||||| ||||
Sbjct: 65  tataaagttaagacagttattttgagacggaggaagta 102




>RF00906;MIR1122;AF181455.1/3108-2994 4513:Hordeum vulgare
          Length = 115

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 6   gtactccctccgtcctaaaataagtg 31
           ||||||||||||||| ||||||||||
Sbjct: 112 gtactccctccgtcccaaaataagtg 87




>RF00906;MIR1122;AAAA02018804.1/15100-15261 39946:Oryza sativa
           Indica Group
          Length = 162

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 6   gtactccctccgtcctaaaata 27
           ||||||||||||||||||||||
Sbjct: 159 gtactccctccgtcctaaaata 138




>RF00906;MIR1122;AAAA02021832.1/90208-90105 39946:Oryza sativa
           Indica Group
          Length = 104

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 6   gtactccctccgtcctaaaata 27
           ||||||||||||||||||||||
Sbjct: 101 gtactccctccgtcctaaaata 80




>RF00906;MIR1122;FJ581044.1/175385-175266 4538:Oryza glaberrima
           (African rice)
          Length = 120

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 80  agttattttgggagggagggagtact 105
           ||||||||||||| ||||||||||||
Sbjct: 28  agttattttgggacggagggagtact 3




>RF00906;MIR1122;ABRL01001046.1/3877-3720 65489:Oryza barthii
          Length = 158

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 7  tactccctccgtcctaaaataa 28
          ||||||||||||||||||||||
Sbjct: 5  tactccctccgtcctaaaataa 26




>RF00906;MIR1122;AAAA02035863.1/20568-20679 39946:Oryza sativa
          Indica Group
          Length = 112

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 6  gtactccctccgtcctaaaata 27
          ||||||||||||||||||||||
Sbjct: 4  gtactccctccgtcctaaaata 25




>RF00906;MIR1122;AP002901.2/60176-60097 39947:Oryza sativa
          Japonica Group
          Length = 80

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 6  gtactccctccgtcctaaaata 27
          ||||||||||||||||||||||
Sbjct: 4  gtactccctccgtcctaaaata 25




>RF00906;MIR1122;AACV01006869.1/7572-7699 39947:Oryza sativa
          Japonica Group
          Length = 128

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 6  gtactccctccgtcctaaaata 27
          ||||||||||||||||||||||
Sbjct: 4  gtactccctccgtcctaaaata 25




>RF00906;MIR1122;AAAA02010499.1/21534-21382 39946:Oryza sativa
           Indica Group
          Length = 153

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 7   tactccctccgtcctaaaataa 28
           ||||||||||||||||||||||
Sbjct: 149 tactccctccgtcctaaaataa 128




>RF00906;MIR1122;AP008218.1/18423778-18423640 39947:Oryza sativa
           Japonica Group
          Length = 139

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 6   gtactccctccgtcctaaaata 27
           ||||||||||||||||||||||
Sbjct: 136 gtactccctccgtcctaaaata 115




>RF00906;MIR1122;AP003508.3/31246-31125 39947:Oryza sativa
          Japonica Group
          Length = 122

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 7  tactccctccgtcctaaaataa 28
          ||||||||||||||||||||||
Sbjct: 5  tactccctccgtcctaaaataa 26