miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
Length = 105
Score = 115 bits (58), Expect = 1e-25
Identities = 85/94 (90%)
Strand = Plus / Plus
Query: 15 tccctcagtcccaaaataagtgtcttaactctagtacaattttgtactaaagttagtaca 74
|||||| ||| |||||||||||||| || ||||||||| ||||||||||||||||||||
Sbjct: 8 tccctccgtctcaaaataagtgtctcaagcctagtacaactttgtactaaagttagtaca 67
Query: 75 aacttgagacacttattttgggacagagggagta 108
|| || |||||||||||||||||| |||||||||
Sbjct: 68 aagttaagacacttattttgggacggagggagta 101
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 15 tccctcagtcccaaaataagtgtcttaact 44
|||||| |||||||||||||||||||||||
Sbjct: 98 tccctccgtcccaaaataagtgtcttaact 69
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 77 cttgagacacttattttgggacagagggagta 108
|||||||||||||||||| ||| |||||||||
Sbjct: 36 cttgagacacttattttgagacggagggagta 5
>RF00906;MIR1122;DQ901436.1/1229-1333 4565:Triticum aestivum (bread
wheat)
Length = 105
Score = 113 bits (57), Expect = 5e-25
Identities = 75/81 (92%)
Strand = Plus / Minus
Query: 26 caaaataagtgtcttaactctagtacaattttgtactaaagttagtacaaacttgagaca 85
|||||||||||||| ||||||||||||| |||||| ||||| ||||||||| ||||||||
Sbjct: 87 caaaataagtgtctcaactctagtacaactttgtattaaagctagtacaaagttgagaca 28
Query: 86 cttattttgggacagagggag 106
||||||||||||| |||||||
Sbjct: 27 cttattttgggacggagggag 7
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 15 tccctcagtcccaaaataagtgtcttaact 44
|||||| |||||||||||||||||| ||||
Sbjct: 8 tccctccgtcccaaaataagtgtctcaact 37
>RF00906;MIR1122;FJ184990.1/3303-3406 4565:Triticum aestivum (bread
wheat)
Length = 104
Score = 109 bits (55), Expect = 8e-24
Identities = 86/95 (90%), Gaps = 1/95 (1%)
Strand = Plus / Plus
Query: 15 tccctcagtcccaaaataagtgtcttaactctagtacaattttgtactaaagttagtaca 74
|||||| |||||||||||||||||| ||| |||||||||||| ||||| ||||||||||
Sbjct: 8 tccctccgtcccaaaataagtgtctcaaccttagtacaattttatactagagttagtaca 67
Query: 75 aacttgagacacttattttgggacagagggagtat 109
|| |||||||||||||||||||| ||||||||||
Sbjct: 68 aa-gtgagacacttattttgggacggagggagtat 101
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 78 ttgagacacttattttgggacagagggagtat 109
||||||||||||||||||||| ||||||||||
Sbjct: 35 ttgagacacttattttgggacggagggagtat 4
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 107 bits (54), Expect = 3e-23
Identities = 84/94 (89%)
Strand = Plus / Plus
Query: 15 tccctcagtcccaaaataagtgtcttaactctagtacaattttgtactaaagttagtaca 74
|||||| |||||||||||||||||| || |||||||| ||||||||||||||| ||||
Sbjct: 8 tccctccgtcccaaaataagtgtctcaagcttagtacaactttgtactaaagttaataca 67
Query: 75 aacttgagacacttattttgggacagagggagta 108
|| |||||||| |||||||||||| |||||||||
Sbjct: 68 aagttgagacatttattttgggacggagggagta 101
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 77 cttgagacacttattttgggacagagggagtat 109
|||||||||||||||||||||| ||||||||||
Sbjct: 36 cttgagacacttattttgggacggagggagtat 4
>RF00906;MIR1122;AF488415.1/78603-78755 4568:Triticum monococcum
Length = 153
Score = 103 bits (52), Expect = 5e-22
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 46 tagtacaattttgtactaaagttagtacaaacttgagacacttattttgggacagaggga 105
|||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 87 tagtacaactttgtactaaagttagtacaaacttgagacagttattttgggacggaggga 146
Query: 106 gtat 109
||||
Sbjct: 147 gtat 150
Score = 69.9 bits (35), Expect = 7e-12
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 22 gtcccaaaataagtgtcttaactctagtacaattttgtactaaagttagtacaaacttga 81
|||||||||||||||||| ||| |||||||| |||| |||||| |||||||||| ||||
Sbjct: 15 gtcccaaaataagtgtctcaaccttagtacaactttgcactaaatttagtacaaagttga 74
Query: 82 gac 84
|||
Sbjct: 75 gac 77
>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 101 bits (51), Expect = 2e-21
Identities = 84/95 (88%)
Strand = Plus / Plus
Query: 15 tccctcagtcccaaaataagtgtcttaactctagtacaattttgtactaaagttagtaca 74
|||||| |||||||||||||||||| || |||| |||||||||||| || |||||||
Sbjct: 8 tccctccgtcccaaaataagtgtctcaagcttagtgtaattttgtactacagctagtaca 67
Query: 75 aacttgagacacttattttgggacagagggagtat 109
|| ||||||||||||||||||||| ||||||||||
Sbjct: 68 aagttgagacacttattttgggacggagggagtat 102
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 77 cttgagacacttattttgggacagagggagta 108
|||||||||||||||||||||| |||||||||
Sbjct: 36 cttgagacacttattttgggacggagggagta 5
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 15 tccctcagtcccaaaataagtgtcttaact 44
|||||| |||||||||||||||||| ||||
Sbjct: 98 tccctccgtcccaaaataagtgtctcaact 69
>RF00906;MIR1122;AJ400714.1/3663-3767 4565:Triticum aestivum (bread
wheat)
Length = 105
Score = 99.6 bits (50), Expect = 8e-21
Identities = 83/94 (88%)
Strand = Plus / Minus
Query: 15 tccctcagtcccaaaataagtgtcttaactctagtacaattttgtactaaagttagtaca 74
|||||| |||||||||||||||||| ||| |||||||| ||||||||| ||||||| |
Sbjct: 98 tccctccgtcccaaaataagtgtctcaaccttagtacaactttgtactagagttagtgta 39
Query: 75 aacttgagacacttattttgggacagagggagta 108
|| ||||||||||||||||||||| || ||||||
Sbjct: 38 aaattgagacacttattttgggacggaaggagta 5
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 78 ttgagacacttattttgggacagagggagtat 109
||||||||||||||||||||| ||||||||||
Sbjct: 71 ttgagacacttattttgggacggagggagtat 102
>RF00906;MIR1122;AY133251.1/901-1005 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 99.6 bits (50), Expect = 8e-21
Identities = 83/94 (88%)
Strand = Plus / Plus
Query: 15 tccctcagtcccaaaataagtgtcttaactctagtacaattttgtactaaagttagtaca 74
|||||| || |||||||||||||||| | |||||||||||||||||| || |||||||
Sbjct: 8 tccctccgttccaaaataagtgtcttgagcgtagtacaattttgtactagagctagtaca 67
Query: 75 aacttgagacacttattttgggacagagggagta 108
|| |||||||| |||||||||||| |||||||||
Sbjct: 68 aagttgagacagttattttgggacggagggagta 101
>RF00906;MIR1122;AJ234485.1/114-218 4513:Hordeum vulgare
Length = 105
Score = 99.6 bits (50), Expect = 8e-21
Identities = 83/94 (88%)
Strand = Plus / Plus
Query: 15 tccctcagtcccaaaataagtgtcttaactctagtacaattttgtactaaagttagtaca 74
|||||| ||| ||||||||||||||||| |||||||||||||||||| || |||||||
Sbjct: 8 tccctccgtctcaaaataagtgtcttaatcttagtacaattttgtactagagctagtaca 67
Query: 75 aacttgagacacttattttgggacagagggagta 108
| |||||||| |||||||| |||||||||||||
Sbjct: 68 atgttgagacagttattttgagacagagggagta 101
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 99.6 bits (50), Expect = 8e-21
Identities = 83/94 (88%)
Strand = Plus / Plus
Query: 15 tccctcagtcccaaaataagtgtcttaactctagtacaattttgtactaaagttagtaca 74
|||||| |||||||||||||||||| || |||||||| |||||||||||||| ||||
Sbjct: 8 tccctccgtcccaaaataagtgtctcaagcttagtacaaccttgtactaaagttaataca 67
Query: 75 aacttgagacacttattttgggacagagggagta 108
|| |||||||| |||||||||||| |||||||||
Sbjct: 68 aagttgagacatttattttgggacggagggagta 101
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 77 cttgagacacttattttgggacagagggagtat 109
|||||||||||||||||||||| ||||||||||
Sbjct: 36 cttgagacacttattttgggacggagggagtat 4
>RF00906;MIR1122;AY821694.1/1308-1197 37674:Crithopsis delileana
Length = 112
Score = 99.6 bits (50), Expect = 8e-21
Identities = 62/66 (93%)
Strand = Plus / Plus
Query: 46 tagtacaattttgtactaaagttagtacaaacttgagacacttattttgggacagaggga 105
|||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 46 tagtacaactttgtactaaagttagtacaaagttgagacacttattttgggatggaggga 105
Query: 106 gtatga 111
||||||
Sbjct: 106 gtatga 111
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 81 agacacttattttgggacagagggagta 108
|||||||||||||||||| |||||||||
Sbjct: 32 agacacttattttgggacggagggagta 5
>RF00906;MIR1122;DQ871219.1/106890-106994 85692:Triticum turgidum
subsp. dicoccoides
Length = 105
Score = 91.7 bits (46), Expect = 2e-18
Identities = 82/94 (87%)
Strand = Plus / Plus
Query: 15 tccctcagtcccaaaataagtgtcttaactctagtacaattttgtactaaagttagtaca 74
|||||| ||||||||||||||||||| | ||||| || ||||||||| || |||||||
Sbjct: 8 tccctccgtcccaaaataagtgtcttgagcttagtaaaaatttgtactagagatagtaca 67
Query: 75 aacttgagacacttattttgggacagagggagta 108
|| |||||||||||||||||||| |||||||||
Sbjct: 68 aagttgagacacttattttgggatggagggagta 101
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 81 agacacttattttgggacagagggagtat 109
|||||||||||||||||| ||||||||||
Sbjct: 32 agacacttattttgggacggagggagtat 4
>RF00906;MIR1122;AJ249141.1/1014-910 4513:Hordeum vulgare
Length = 105
Score = 85.7 bits (43), Expect = 1e-16
Identities = 82/95 (86%)
Strand = Plus / Plus
Query: 15 tccctcagtcccaaaataagtgtcttaactctagtacaattttgtactaaagttagtaca 74
|||||| |||| |||||||||||||||| |||||||| ||||||||| || || ||||
Sbjct: 8 tccctcggtcctaaaataagtgtcttaagcttagtacaactttgtactagagctaataca 67
Query: 75 aacttgagacacttattttgggacagagggagtat 109
|| |||||||| |||||||| ||| ||||||||||
Sbjct: 68 aagttgagacagttattttgagacggagggagtat 102
>RF00906;MIR1122;AY943294.1/62260-62364 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 83.8 bits (42), Expect = 5e-16
Identities = 81/94 (86%)
Strand = Plus / Plus
Query: 15 tccctcagtcccaaaataagtgtcttaactctagtacaattttgtactaaagttagtaca 74
|||||| || |||||||||||||||||| || ||||||||||||||||| || ||||
Sbjct: 8 tccctccgttccaaaataagtgtcttaagcttaatacaattttgtactaaatctaataca 67
Query: 75 aacttgagacacttattttgggacagagggagta 108
|| |||||||| |||||||||||| |||| ||||
Sbjct: 68 aagttgagacagttattttgggacggaggaagta 101
>RF00906;MIR1122;AF474373.1/50497-50394 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 104
Score = 79.8 bits (40), Expect = 7e-15
Identities = 67/76 (88%)
Strand = Plus / Plus
Query: 22 gtcccaaaataagtgtcttaactctagtacaattttgtactaaagttagtacaaacttga 81
|||||||||||| ||||| || ||||||||| ||||||||| | ||||||||| ||||
Sbjct: 15 gtcccaaaataactgtctcaagcctagtacaactttgtactagaactagtacaaagttga 74
Query: 82 gacacttattttggga 97
||||||||||||||||
Sbjct: 75 gacacttattttggga 90
>RF00906;MIR1122;DQ445236.1/13423-13319 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 79.8 bits (40), Expect = 7e-15
Identities = 58/64 (90%)
Strand = Plus / Minus
Query: 46 tagtacaattttgtactaaagttagtacaaacttgagacacttattttgggacagaggga 105
|||||||| ||||||||| || ||||||||| |||||||||||||||||| || ||||||
Sbjct: 67 tagtacaactttgtactagagctagtacaaatttgagacacttattttggaacggaggga 8
Query: 106 gtat 109
||||
Sbjct: 7 gtat 4
>RF00906;MIR1122;AK249560.1/988-1092 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 77.8 bits (39), Expect = 3e-14
Identities = 81/95 (85%)
Strand = Plus / Minus
Query: 15 tccctcagtcccaaaataagtgtcttaactctagtacaattttgtactaaagttagtaca 74
|||||| |||||||||||| ||||| || || ||||| ||||||||| || ||||| |
Sbjct: 98 tccctccgtcccaaaataactgtctcaaacttaatacaagtttgtactatagctagtata 39
Query: 75 aacttgagacacttattttgggacagagggagtat 109
|| ||||||||||||||||||||| || |||||||
Sbjct: 38 aagttgagacacttattttgggacggatggagtat 4
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 78 ttgagacacttattttgggacagagggagta 108
|||||||| |||||||||||| |||||||||
Sbjct: 71 ttgagacagttattttgggacggagggagta 101
>RF00906;MIR1122;DQ995510.1/1615-1718 4513:Hordeum vulgare
Length = 104
Score = 75.8 bits (38), Expect = 1e-13
Identities = 81/94 (86%), Gaps = 1/94 (1%)
Strand = Plus / Plus
Query: 15 tccctcagtcccaaaataagtgtcttaactctagtacaattttgtactaaagttagtaca 74
|||||| ||| |||||||| ||||| |||| | |||||| ||||||||| || |||||||
Sbjct: 8 tccctccgtctcaaaataactgtctcaacttt-gtacaactttgtactagagctagtaca 66
Query: 75 aacttgagacacttattttgggacagagggagta 108
|| |||||||| ||||||||||| |||||||||
Sbjct: 67 aagttgagacagttattttgggatggagggagta 100
>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
Length = 132
Score = 75.8 bits (38), Expect = 1e-13
Identities = 47/50 (94%)
Strand = Plus / Minus
Query: 63 aaagttagtacaaacttgagacacttattttgggacagagggagtatgaa 112
|||||||||||||| ||||| ||||||||||||||| |||||||||||||
Sbjct: 50 aaagttagtacaaagttgagtcacttattttgggacggagggagtatgaa 1
Score = 58.0 bits (29), Expect = 3e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 61 ctaaagttagtacaaacttgagacacttattttggga 97
|||||||||||||||| ||||| ||||||||||||||
Sbjct: 81 ctaaagttagtacaaagttgagtcacttattttggga 117
>RF00906;MIR1122;AK252392.1/1279-1175 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 73.8 bits (37), Expect = 5e-13
Identities = 79/93 (84%)
Strand = Plus / Plus
Query: 16 ccctcagtcccaaaataagtgtcttaactctagtacaattttgtactaaagttagtacaa 75
||||| ||||||||||||||||||||| |||||||||||| ||| || ||||||||
Sbjct: 9 ccctccgtcccaaaataagtgtcttaagcttagtacaattttatacatgagctagtacaa 68
Query: 76 acttgagacacttattttgggacagagggagta 108
| || ||||| ||||||||||| |||||||||
Sbjct: 69 agttaagacagatattttgggacggagggagta 101
>RF00906;MIR1122;X83518.1/7301-7197 4513:Hordeum vulgare
Length = 105
Score = 71.9 bits (36), Expect = 2e-12
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 46 tagtacaattttgtactaaagttagtacaaacttgagacacttattttgggacagaggga 105
|||||||| |||||| || || ||||||||| |||||||||||||||||| | |||||||
Sbjct: 39 tagtacaactttgtagtagagctagtacaaagttgagacacttattttggaagagaggga 98
Query: 106 gtat 109
||||
Sbjct: 99 gtat 102
>RF00906;MIR1122;FJ477093.1/40908-41001 4513:Hordeum vulgare
Length = 94
Score = 69.9 bits (35), Expect = 7e-12
Identities = 41/43 (95%)
Strand = Plus / Minus
Query: 67 ttagtacaaacttgagacacttattttgggacagagggagtat 109
|||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 46 ttagtacaaagttgagtcacttattttgggacagagggagtat 4
Score = 67.9 bits (34), Expect = 3e-11
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 55 tttgtactaaagttagtacaaacttgagacacttattttgggacagagggagta 108
|||||||||||||||||| ||| ||||| |||||| |||||||| |||||||||
Sbjct: 37 tttgtactaaagttagtataaagttgagtcacttaatttgggacggagggagta 90
>RF00906;MIR1122;EU593539.1/914-1018 4513:Hordeum vulgare
Length = 105
Score = 69.9 bits (35), Expect = 7e-12
Identities = 80/95 (84%)
Strand = Plus / Plus
Query: 15 tccctcagtcccaaaataagtgtcttaactctagtacaattttgtactaaagttagtaca 74
|||||| |||||||||||| |||||||| ||||| || ||| ||||| | ||||| |
Sbjct: 8 tccctccgtcccaaaataactgtcttaagcttagtataaatttatactagatctagtata 67
Query: 75 aacttgagacacttattttgggacagagggagtat 109
|| |||||||| |||||||||||| ||||||||||
Sbjct: 68 aagttgagacagttattttgggacggagggagtat 102
>RF00906;MIR1122;AK249748.1/2677-2573 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 67.9 bits (34), Expect = 3e-11
Identities = 79/94 (84%)
Strand = Plus / Minus
Query: 15 tccctcagtcccaaaataagtgtcttaactctagtacaattttgtactaaagttagtaca 74
|||||| ||| |||||||| |||||||| ||||| || ||| || ||||| |||||||
Sbjct: 98 tccctccgtcgcaaaataaatgtcttaaacttagtataaatttatagtaaagctagtaca 39
Query: 75 aacttgagacacttattttgggacagagggagta 108
|| || ||||| ||||||||| ||||||||||||
Sbjct: 38 aagttaagacagttattttggaacagagggagta 5
>RF00906;MIR1122;DQ175992.1/50-154 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 67.9 bits (34), Expect = 3e-11
Identities = 70/82 (85%)
Strand = Plus / Plus
Query: 27 aaaataagtgtcttaactctagtacaattttgtactaaagttagtacaaacttgagacac 86
|||||||||||||||| ||||| |||||| ||||| || ||| ||||| || |||||
Sbjct: 20 aaaataagtgtcttaagcttagtataattttatactagagctagaacaaagttaagacaa 79
Query: 87 ttattttgggacagagggagta 108
|||||||||||| |||||||||
Sbjct: 80 ttattttgggacggagggagta 101
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 15 tccctcagtcccaaaataagtgtcttaact 44
|||||| |||||||||||| ||||||||||
Sbjct: 98 tccctccgtcccaaaataattgtcttaact 69
>RF00906;MIR1122;FJ374624.1/2920-2820 4572:Triticum urartu
Length = 101
Score = 65.9 bits (33), Expect = 1e-10
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 64 aagttagtacaaacttgagacacttattttgggacagagggagta 108
||||||||||||| ||||| ||||||||||||||||||| |||||
Sbjct: 53 aagttagtacaaagttgagtcacttattttgggacagagcgagta 97
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 61 ctaaagttagtacaaacttgagacacttattttgggac 98
|||||||||||||||| ||||| |||||| ||||||||
Sbjct: 52 ctaaagttagtacaaagttgagtcacttactttgggac 15
>RF00906;MIR1122;U29095.1/333-439 4565:Triticum aestivum (bread
wheat)
Length = 107
Score = 61.9 bits (31), Expect = 2e-09
Identities = 84/98 (85%), Gaps = 4/98 (4%)
Strand = Plus / Minus
Query: 15 tccctcagtcccaaaataagtgtcttaactctagtac-aattttgtactaaagttagtac 73
|||||| ||||| ||||||||| || |||| | |||| |||||||||||||| |||||
Sbjct: 100 tccctccgtcccgaaataagtgactcaacttt-gtactaattttgtactaaaaatagtat 42
Query: 74 aaacttgaga--cacttattttgggacagagggagtat 109
||| |||||| ||||||||||||||| ||||||||||
Sbjct: 41 aaagttgagatccacttattttgggacggagggagtat 4
>RF00906;MIR1122;AF521177.1/81577-81474 4513:Hordeum vulgare
Length = 104
Score = 61.9 bits (31), Expect = 2e-09
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 67 ttagtacaaacttgagacacttattttgggacagagggagtat 109
|||||||||| ||||| ||||||||||||||| ||||||||||
Sbjct: 59 ttagtacaaagttgagtcacttattttgggacggagggagtat 101
>RF00906;MIR1122;DQ445238.1/5626-5730 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 61.9 bits (31), Expect = 2e-09
Identities = 79/95 (83%)
Strand = Plus / Plus
Query: 15 tccctcagtcccaaaataagtgtcttaactctagtacaattttgtactaaagttagtaca 74
|||||| |||||||||||| |||||||| ||||| || ||| || || | ||||| |
Sbjct: 8 tccctccgtcccaaaataactgtcttaagcttagtataaatttatattagatctagtata 67
Query: 75 aacttgagacacttattttgggacagagggagtat 109
|| |||||||| |||||||||||| ||||||||||
Sbjct: 68 aagttgagacagttattttgggacggagggagtat 102
>RF00906;MIR1122;AB183299.1/312-404 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 60.0 bits (30), Expect = 7e-09
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 15 tccctcagtcccaaaataagtgtcttaactctagtacaattttgtactaa 64
|||||| |||||||||||||||||| |||| ||||| || ||||||||||
Sbjct: 8 tccctccgtcccaaaataagtgtctcaactttagtataactttgtactaa 57
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 78 ttgagacacttattttgggacagagggag 106
||||||||||||||||||||| |||||||
Sbjct: 35 ttgagacacttattttgggacggagggag 7
Score = 48.1 bits (24), Expect = 3e-05
Identities = 46/52 (88%), Gaps = 1/52 (1%)
Strand = Plus / Minus
Query: 17 cctcagtcccaaaataagtgtcttaactctagtacaattttgtactaaagtt 68
|||| |||||||||||||||||| |||| |||||||| || ||||||||||
Sbjct: 84 cctccgtcccaaaataagtgtctcaact-tagtacaaagttatactaaagtt 34
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 78 ttgagacacttattttgggacagagggagtat 109
||||||||||||||||||||| |||| |||||
Sbjct: 59 ttgagacacttattttgggacggaggaagtat 90
>RF00906;MIR1122;AK252095.1/1820-1925 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 106
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 82 gacacttattttgggacagagggagtatg 110
|||||||||||||||||||||||||||||
Sbjct: 76 gacacttattttgggacagagggagtatg 104
>RF00906;MIR1122;AY663392.1/117099-117203 4565:Triticum aestivum
(bread wheat)
Length = 105
Score = 56.0 bits (28), Expect = 1e-07
Identities = 70/84 (83%)
Strand = Plus / Plus
Query: 27 aaaataagtgtcttaactctagtacaattttgtactaaagttagtacaaacttgagacac 86
||||||||||||| || ||||| || ||| |||||||| || |||||| || | ||||
Sbjct: 20 aaaataagtgtctcaatcttagtataactttatactaaagctaatacaaaattaacacac 79
Query: 87 ttattttgggacagagggagtatg 110
||||||||||| |||||||||||
Sbjct: 80 ttattttgggatggagggagtatg 103
>RF00906;MIR1122;FJ491378.1/4581-4466 4550:Secale cereale (rye)
Length = 116
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 78 ttgagacacttattttgggacagagggagtat 109
||||| ||||||||||||||||||||||||||
Sbjct: 35 ttgagtcacttattttgggacagagggagtat 4
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 78 ttgagacacttattttgggacagagggagtat 109
||||| ||||||||||||||| ||||||||||
Sbjct: 82 ttgagtcacttattttgggacggagggagtat 113
>RF00906;MIR1122;EU282251.1/1314-1209 52152:Elymus repens
Length = 106
Score = 56.0 bits (28), Expect = 1e-07
Identities = 82/96 (85%), Gaps = 3/96 (3%)
Strand = Plus / Minus
Query: 15 tccctcagtcccaaaataagtgtcttaactctagtacaat-tttgtactaaagttagtac 73
|||||| ||||||||||||||||| |||||||| || |||||||||| |||||||
Sbjct: 99 tccctccgtcccaaaataagtgtcgctgctctagtattatatttgtactaac-ttagtac 41
Query: 74 -aaacttgagacacttattttgggacagagggagta 108
||| ||| ||||||||||||||||| |||||||||
Sbjct: 40 taaatttgcgacacttattttgggacggagggagta 5
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 82 gacacttattttgggacagagggagtat 109
||||||||||||||||| ||||||||||
Sbjct: 76 gacacttattttgggacggagggagtat 103
>RF00906;MIR1122;AF488415.1/128685-128592 4568:Triticum monococcum
Length = 94
Score = 54.0 bits (27), Expect = 4e-07
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 55 tttgtactaaagttagtacaaacttgagacacttattttgggacagagggagtat 109
|||||||||||||||||||||| ||||| || |||||||| | ||||||||||
Sbjct: 37 tttgtactaaagttagtacaaagttgagtcatctattttggaatggagggagtat 91
>RF00906;MIR1122;DQ537335.1/8332-8425 4565:Triticum aestivum (bread
wheat)
Length = 94
Score = 54.0 bits (27), Expect = 4e-07
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 60 actaaagttagtacaaacttgagacacttattttgggacagagggagtatg 110
||||||||||||||||| ||||| || |||||||| || |||||||||||
Sbjct: 53 actaaagttagtacaaagttgagtcatctattttggaacggagggagtatg 3
>RF00906;MIR1122;AK250735.1/291-376 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 86
Score = 52.0 bits (26), Expect = 2e-06
Identities = 39/42 (92%), Gaps = 1/42 (2%)
Strand = Plus / Minus
Query: 68 tagtacaaacttg-agacacttattttgggacagagggagta 108
||||||||| ||| |||||||||||||||||| |||||||||
Sbjct: 46 tagtacaaagttggagacacttattttgggacggagggagta 5
>RF00906;MIR1122;EU282771.1/632-528 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 52.0 bits (26), Expect = 2e-06
Identities = 77/94 (81%)
Strand = Plus / Plus
Query: 15 tccctcagtcccaaaataagtgtcttaactctagtacaattttgtactaaagttagtaca 74
|||||| |||||||||||| | ||| || |||||||| ||| ||||| || |||| |
Sbjct: 8 tccctccgtcccaaaataactttctcaaacttagtacaactttatactagagctagtgta 67
Query: 75 aacttgagacacttattttgggacagagggagta 108
|| |||||| |||||||||| ||| |||||||||
Sbjct: 68 aagttgagatacttattttgagacggagggagta 101
>RF00906;MIR1122;AF525764.1/1593-1489 200361:Aegilops tauschii
subsp. strangulata
Length = 105
Score = 52.0 bits (26), Expect = 2e-06
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 23 tcccaaaataagtgtcttaactctagtacaattttgtactaaagtt 68
|||||||||||||||||| || |||||||| |||||||| |||||
Sbjct: 90 tcccaaaataagtgtctttgctttagtacaactttgtactgaagtt 45
>RF00906;MIR1122;DQ267106.1/62901-62968 4572:Triticum urartu
Length = 68
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 84 cacttattttgggacagagggagta 108
|||||||||||||||||||||||||
Sbjct: 40 cacttattttgggacagagggagta 64
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 84 cacttattttgggacagagggagtat 109
||||||||||||||| ||||||||||
Sbjct: 29 cacttattttgggacggagggagtat 4
>RF00906;MIR1122;AF091802.1/1995-2099 37682:Aegilops tauschii
Length = 105
Score = 50.1 bits (25), Expect = 7e-06
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 52 aattttgtactaaagttagtacaaacttgagacacttattttgggacagagggagta 108
|||||||||||| |||||||||||| ||||| || |||||| | || |||||||||
Sbjct: 45 aattttgtactatagttagtacaaagttgagtcatctattttagaacggagggagta 101
>RF00906;MIR1122;AF325197.1/3732-3639 4565:Triticum aestivum
(bread wheat)
Length = 94
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 55 tttgtactaaagttagtacaaacttgag 82
|||||||||||||||||||||| |||||
Sbjct: 37 tttgtactaaagttagtacaaagttgag 64
>RF00906;MIR1122;AJ507395.1/7785-7899 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 115
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 78 ttgagacacttattttgggacagaggga 105
||||| ||||||||||||||||||||||
Sbjct: 35 ttgagtcacttattttgggacagaggga 8
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 78 ttgagacacttattttgggacagagggagta 108
||||| ||||||||||||||| |||||||||
Sbjct: 81 ttgagtcacttattttgggacggagggagta 111
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 ataatccctcagtcccaaaataagtg 36
|||||||||| |||||||||||||||
Sbjct: 4 ataatccctctgtcccaaaataagtg 29
>RF00906;MIR1122;AAAA02021906.1/16695-16573 39946:Oryza sativa
Indica Group
Length = 123
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 ttattttgggacagagggagtatg 110
||||||||||||||||||||||||
Sbjct: 98 ttattttgggacagagggagtatg 121
>RF00906;MIR1122;ABXC01004408.1/208298-208202 4558:Sorghum bicolor
(sorghum)
Length = 97
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 82 gacacttattttgggacagagggagta 108
|||||| ||||||||||||||||||||
Sbjct: 31 gacactcattttgggacagagggagta 5
>RF00906;MIR1122;AB182945.1/6773-6906 4565:Triticum aestivum (bread
wheat)
Length = 134
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 79 tgagacacttattttgggacagagggagtat 109
||||||||||||||||| || ||||||||||
Sbjct: 101 tgagacacttattttggaacggagggagtat 131
>RF00906;MIR1122;EU282656.1/645-750 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 106
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 82 gacacttattttgggacagagggagta 108
||||||||||||||||| |||||||||
Sbjct: 76 gacacttattttgggaccgagggagta 102
>RF00906;MIR1122;AP008214.1/14410723-14410632 39947:Oryza sativa
Japonica Group
Length = 92
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 84 cacttattttgggacagagggagtatg 110
||||||||||||||| |||||||||||
Sbjct: 29 cacttattttgggacggagggagtatg 3
>RF00906;MIR1122;AACV01015822.1/5399-5292 39947:Oryza sativa
Japonica Group
Length = 108
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 88 tattttgggacagagggagtatg 110
|||||||||||||||||||||||
Sbjct: 25 tattttgggacagagggagtatg 3
>RF01058;MIR806;AP008208.1/6823788-6823544 39947:Oryza sativa
Japonica Group
Length = 245
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 84 cacttattttgggacagagggagtat 109
||||||||||||||| ||||||||||
Sbjct: 220 cacttattttgggacggagggagtat 245
>RF01058;MIR806;AL731615.4/103346-103100 39947:Oryza sativa Japonica
Group
Length = 247
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 83 acacttattttgggacagagggagta 108
|||||||||||||||| |||||||||
Sbjct: 27 acacttattttgggacggagggagta 2
>RF01058;MIR806;AACV01008707.1/8338-8098 39947:Oryza sativa Japonica
Group
Length = 241
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 88 tattttgggacagagggagtat 109
||||||||||||||||||||||
Sbjct: 22 tattttgggacagagggagtat 1
>RF01058;MIR806;AACV01025022.1/35011-35254 39947:Oryza sativa
Japonica Group
Length = 244
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 84 cacttattttgggacagagggagtat 109
||||||||||||||| ||||||||||
Sbjct: 26 cacttattttgggacggagggagtat 1
>RF01058;MIR806;AC136971.3/14967-14725 39947:Oryza sativa Japonica
Group
Length = 243
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 88 tattttgggacagagggagtat 109
||||||||||||||||||||||
Sbjct: 222 tattttgggacagagggagtat 243
>RF01058;MIR806;AAAA02004537.1/25464-25706 39946:Oryza sativa Indica
Group
Length = 243
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 84 cacttattttgggacagagggagtat 109
||||||||||||||| ||||||||||
Sbjct: 26 cacttattttgggacggagggagtat 1
>RF01058;MIR806;AAAA02009876.1/3121-2881 39946:Oryza sativa Indica
Group
Length = 241
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 84 cacttattttgggacagagggagtat 109
||||||||||||||| ||||||||||
Sbjct: 216 cacttattttgggacggagggagtat 241
>RF00906;MIR1122;EU282768.1/632-528 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 76/94 (80%)
Strand = Plus / Plus
Query: 15 tccctcagtcccaaaataagtgtcttaactctagtacaattttgtactaaagttagtaca 74
|||||| |||||||||||| | ||| || |||||||| ||| ||||| || |||| |
Sbjct: 8 tccctccgtcccaaaataactttctcaaacttagtacaactttatactagagctagtgta 67
Query: 75 aacttgagacacttattttgggacagagggagta 108
|| ||||| |||||||||| ||| |||||||||
Sbjct: 68 aagctgagatacttattttgagacggagggagta 101
>RF00906;MIR1122;DQ106595.1/374-276 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 99
Score = 44.1 bits (22), Expect = 4e-04
Identities = 49/57 (85%), Gaps = 2/57 (3%)
Strand = Plus / Minus
Query: 55 tttgtactaa--agttagtacaaacttgagacacttattttgggacagagggagtat 109
|||||||||| |||||||||||| |||| ||||||||||| |||| | |||||||
Sbjct: 60 tttgtactaactagttagtacaaagttgaatcacttattttgagacacatggagtat 4
>RF00906;MIR1122;AACV01004030.1/351-512 39947:Oryza sativa Japonica
Group
Length = 162
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 88 tattttgggacagagggagtat 109
||||||||||||||||||||||
Sbjct: 25 tattttgggacagagggagtat 4
>RF00906;MIR1122;AP004621.3/94317-94428 39947:Oryza sativa Japonica
Group
Length = 112
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 89 attttgggacagagggagtatg 110
||||||||||||||||||||||
Sbjct: 24 attttgggacagagggagtatg 3
>RF00906;MIR1122;AP008212.1/3593579-3593709 39947:Oryza sativa
Japonica Group
Length = 131
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 88 tattttgggacagagggagtat 109
||||||||||||||||||||||
Sbjct: 107 tattttgggacagagggagtat 128
>RF00906;MIR1122;AACV01009606.1/13757-13637 39947:Oryza sativa
Japonica Group
Length = 121
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 87 ttattttgggacagagggagta 108
||||||||||||||||||||||
Sbjct: 96 ttattttgggacagagggagta 117
>RF00906;MIR1122;AAAA02008325.1/22579-22685 39946:Oryza sativa
Indica Group
Length = 107
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 84 cacttattttgggacagagggagtat 109
||||||| ||||||||||||||||||
Sbjct: 29 cacttatattgggacagagggagtat 4
