miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;FJ477093.1/40908-41001 4513:Hordeum vulgare
Length = 94
Score = 69.9 bits (35), Expect = 6e-12
Identities = 72/83 (86%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 11 tactccctccgtctcaaaataaatgatttaattttatattaagtttagtataaagttgag 70
||||||||| ||| |||||||| ||| | || ||| || ||| ||||||||||||||||
Sbjct: 5 tactccctctgtcccaaaataagtgactcaactttgtactaaagttagtataaagttgag 64
Query: 71 tcactt-atttgggacggaggga 92
|||||| ||||||||||||||||
Sbjct: 65 tcacttaatttgggacggaggga 87
Score = 69.9 bits (35), Expect = 6e-12
Identities = 72/83 (86%), Gaps = 1/83 (1%)
Strand = Plus / Minus
Query: 11 tactccctccgtctcaaaataaatgatttaattttatattaagtttagtataaagttgag 70
||||||||||||| |||| ||| ||| | || |||||| ||| ||||||| |||||||||
Sbjct: 90 tactccctccgtcccaaattaagtgactcaactttatactaactttagtacaaagttgag 31
Query: 71 tcactta-tttgggacggaggga 92
||||||| |||||||| ||||||
Sbjct: 30 tcacttattttgggacagaggga 8
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 60.0 bits (30), Expect = 6e-09
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 7 ctactactccctccgtctcaaaataaatgatttaattttatattaagtttagtataaagt 66
||||||||||||||||| ||||||||||| | || ||| |||||| ||||||| |||||
Sbjct: 105 ctactactccctccgtcccaaaataaatgtctcaactttgtattaactttagtacaaagt 46
Query: 67 tg 68
||
Sbjct: 45 tg 44
>RF00906;MIR1122;AF521177.1/81577-81474 4513:Hordeum vulgare
Length = 104
Score = 56.0 bits (28), Expect = 9e-08
Identities = 38/40 (95%), Gaps = 1/40 (2%)
Strand = Plus / Plus
Query: 54 tttagtataaagttgagtcactta-tttgggacggaggga 92
||||||| |||||||||||||||| |||||||||||||||
Sbjct: 58 tttagtacaaagttgagtcacttattttgggacggaggga 97
>RF00906;MIR1122;U29095.1/333-439 4565:Triticum aestivum (bread
wheat)
Length = 107
Score = 54.0 bits (27), Expect = 4e-07
Identities = 37/39 (94%), Gaps = 1/39 (2%)
Strand = Plus / Plus
Query: 55 ttagtataaagttgagtcacttattt-gggacggaggga 92
|||||| ||||||||||||||||||| ||||||||||||
Sbjct: 62 ttagtacaaagttgagtcacttatttcgggacggaggga 100
>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
Length = 132
Score = 54.0 bits (27), Expect = 4e-07
Identities = 37/39 (94%), Gaps = 1/39 (2%)
Strand = Plus / Minus
Query: 55 ttagtataaagttgagtcactta-tttgggacggaggga 92
|||||| |||||||||||||||| |||||||||||||||
Sbjct: 46 ttagtacaaagttgagtcacttattttgggacggaggga 8
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 55 ttagtataaagttgagtcacttattt 80
|||||| |||||||||||||||||||
Sbjct: 87 ttagtacaaagttgagtcacttattt 112
>RF00906;MIR1122;AY268139.1/69673-69778 4513:Hordeum vulgare
Length = 106
Score = 52.0 bits (26), Expect = 1e-06
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 11 tactccctccgtctcaaaataaatgatttaattttatattaagtttagtataaa 64
|||| ||||||||||||||||| || |||| |||||||||| || ||||||||
Sbjct: 102 tacttcctccgtctcaaaataactgtcttaactttatattaatttcagtataaa 49
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 52.0 bits (26), Expect = 1e-06
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 7 ctactactccctccgtctcaaaataaatgatttaattttatattaagtttagta 60
||||||||||||||||| ||||||||||| | || ||| |||||| |||||||
Sbjct: 105 ctactactccctccgtcccaaaataaatgtctcaactttgtattaactttagta 52
>RF00906;MIR1122;AY663392.1/117099-117203 4565:Triticum aestivum
(bread wheat)
Length = 105
Score = 50.1 bits (25), Expect = 6e-06
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 11 tactccctccgtctcaaaataaatgatttaattttatattaagtttagtataaagtt 67
|||||||||| || |||||||| || |||||||| ||||| ||||||||||||||
Sbjct: 101 tactccctccatcccaaaataagtgtgttaattttgtattagctttagtataaagtt 45
>RF00906;MIR1122;EU282768.1/632-528 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 8 tactactccctccgtctcaaaataa 32
|||||||||||||||||||||||||
Sbjct: 104 tactactccctccgtctcaaaataa 80
>RF00906;MIR1122;EU282771.1/632-528 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 8 tactactccctccgtctcaaaataa 32
|||||||||||||||||||||||||
Sbjct: 104 tactactccctccgtctcaaaataa 80
>RF00906;MIR1122;AC192352.2/55884-55804 3880:Medicago truncatula
(barrel medic)
Length = 81
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 8 tactactccctccgtctcaaaata 31
||||||||||||||||||||||||
Sbjct: 80 tactactccctccgtctcaaaata 57
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 ctactccctccgtctcaaaata 31
||||||||||||||||||||||
Sbjct: 4 ctactccctccgtctcaaaata 25
>RF00906;MIR1122;FJ374624.1/2920-2820 4572:Triticum urartu
Length = 101
Score = 48.1 bits (24), Expect = 2e-05
Identities = 34/36 (94%), Gaps = 1/36 (2%)
Strand = Plus / Minus
Query: 55 ttagtataaagttgagtcactta-tttgggacggag 89
|||||| |||||||||||||||| ||||||||||||
Sbjct: 46 ttagtacaaagttgagtcacttactttgggacggag 11
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 55 ttagtataaagttgagtcacttattt 80
|||||| |||||||||||||||||||
Sbjct: 56 ttagtacaaagttgagtcacttattt 81
>RF00906;MIR1122;AB239678.1/2131-2247 52163:Triticum monococcum
subsp. aegilopoides
Length = 117
Score = 48.1 bits (24), Expect = 2e-05
Identities = 31/32 (96%), Gaps = 1/32 (3%)
Strand = Plus / Minus
Query: 62 aaagttgagtcactta-tttgggacggaggga 92
|||||||||||||||| |||||||||||||||
Sbjct: 39 aaagttgagtcacttaatttgggacggaggga 8
>RF00906;MIR1122;EU282770.1/593-711 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 119
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 tactactccctccgtctcaaaata 31
||||||||||||||||||||||||
Sbjct: 2 tactactccctccgtctcaaaata 25
>RF00906;MIR1122;AAAA02022195.1/27114-27226 39946:Oryza sativa
Indica Group
Length = 113
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 tactccctccgtctcaaaataaat 34
||||||||||||||||||||||||
Sbjct: 5 tactccctccgtctcaaaataaat 28
>RF00906;MIR1122;EU626553.1/80133-80237 4572:Triticum urartu
Length = 105
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 43 tttatattaagtttagtataaagttgagtca 73
|||||||||| |||||||||||||||||||
Sbjct: 58 tttatattaaagttagtataaagttgagtca 28
>RF00906;MIR1122;AF181455.1/3108-2994 4513:Hordeum vulgare
Length = 115
Score = 46.1 bits (23), Expect = 9e-05
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 31 aaatgatttaattttatattaagtttagtataaagttga 69
|||||||||||||||||| ||| ||||| |||||||||
Sbjct: 35 aaatgatttaattttatagtaaagttagtgtaaagttga 73
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 66 ttgagtcacttatttgggacggagggaatacatg 99
|||||||| || ||||||||||||||| ||||||
Sbjct: 34 ttgagtcatttttttgggacggagggagtacatg 1
>RF00906;MIR1122;DQ445238.1/5626-5730 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 46.1 bits (23), Expect = 9e-05
Identities = 45/51 (88%), Gaps = 1/51 (1%)
Strand = Plus / Plus
Query: 43 tttatattaagtttagtataaagttgagtcactta-tttgggacggaggga 92
||||||||| | ||||||||||||||| || ||| |||||||||||||||
Sbjct: 48 tttatattagatctagtataaagttgagacagttattttgggacggaggga 98
>RF00906;MIR1122;AAAA02004858.1/41238-41369 39946:Oryza sativa
Indica Group
Length = 132
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 7 ctactactccctccgtctcaaaa 29
|||||||||||||||||||||||
Sbjct: 1 ctactactccctccgtctcaaaa 23
>RF00906;MIR1122;AACV01002208.1/17153-17286 39947:Oryza sativa
Japonica Group
Length = 134
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 9 actactccctccgtctcaaaata 31
|||||||||||||||||||||||
Sbjct: 132 actactccctccgtctcaaaata 110
>RF00906;MIR1122;CR855136.1/20944-20809 4530:Oryza sativa (rice)
Length = 136
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 9 actactccctccgtctcaaaata 31
|||||||||||||||||||||||
Sbjct: 134 actactccctccgtctcaaaata 112
>RF00906;MIR1122;AAAA02026943.1/18413-18317 39946:Oryza sativa
Indica Group
Length = 97
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 11 tactccctccgtctcaaaataaa 33
|||||||||||||||||||||||
Sbjct: 93 tactccctccgtctcaaaataaa 71
>RF01058;MIR806;AAAA02021561.1/35714-35484 39946:Oryza sativa
Indica Group
Length = 231
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tactccctccgtctcaaaataa 32
||||||||||||||||||||||
Sbjct: 2 tactccctccgtctcaaaataa 23
>RF00906;MIR1122;DQ901436.1/1229-1333 4565:Triticum aestivum
(bread wheat)
Length = 105
Score = 44.1 bits (22), Expect = 3e-04
Identities = 35/38 (92%), Gaps = 1/38 (2%)
Strand = Plus / Minus
Query: 56 tagtataaagttgagtcacttattt-gggacggaggga 92
||||| ||||||||| ||||||||| ||||||||||||
Sbjct: 45 tagtacaaagttgagacacttattttgggacggaggga 8
>RF00906;MIR1122;AJ249141.1/1014-910 4513:Hordeum vulgare
Length = 105
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 11 tactccctccgtctcaaaataa 32
||||||||||||||||||||||
Sbjct: 101 tactccctccgtctcaaaataa 80
>RF00906;MIR1122;AJ234583.1/157-260 4513:Hordeum vulgare
Length = 104
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tactccctccgtctcaaaataa 32
||||||||||||||||||||||
Sbjct: 5 tactccctccgtctcaaaataa 26
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 11 tactccctccgtctcaaaataa 32
||||||||||||||||||||||
Sbjct: 100 tactccctccgtctcaaaataa 79
>RF00906;MIR1122;AK249560.1/988-1092 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 44.1 bits (22), Expect = 3e-04
Identities = 32/34 (94%), Gaps = 1/34 (2%)
Strand = Plus / Minus
Query: 56 tagtataaagttgagtcactta-tttgggacgga 88
||||||||||||||| |||||| |||||||||||
Sbjct: 45 tagtataaagttgagacacttattttgggacgga 12
>RF00906;MIR1122;AF521177.1/206122-206018 4513:Hordeum vulgare
Length = 105
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 10 ctactccctccgtctcaaaataaatg 35
||||||||||||| ||||||||||||
Sbjct: 102 ctactccctccgtttcaaaataaatg 77
>RF00906;MIR1122;DQ995510.1/1615-1718 4513:Hordeum vulgare
Length = 104
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tactccctccgtctcaaaataa 32
||||||||||||||||||||||
Sbjct: 5 tactccctccgtctcaaaataa 26
>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 44.1 bits (22), Expect = 3e-04
Identities = 35/38 (92%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 56 tagtataaagttgagtcacttattt-gggacggaggga 92
||||| ||||||||| ||||||||| ||||||||||||
Sbjct: 61 tagtacaaagttgagacacttattttgggacggaggga 98
>RF00906;MIR1122;AJ234485.1/114-218 4513:Hordeum vulgare
Length = 105
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tactccctccgtctcaaaataa 32
||||||||||||||||||||||
Sbjct: 5 tactccctccgtctcaaaataa 26
>RF00906;MIR1122;EU593539.1/914-1018 4513:Hordeum vulgare
Length = 105
Score = 44.1 bits (22), Expect = 3e-04
Identities = 35/38 (92%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 56 tagtataaagttgagtcactta-tttgggacggaggga 92
||||||||||||||| || ||| |||||||||||||||
Sbjct: 61 tagtataaagttgagacagttattttgggacggaggga 98
>RF00906;MIR1122;EU282251.1/1314-1209 52152:Elymus repens
Length = 106
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 7 ctactactccctccgtctcaaaataa 32
||||||||||||||||| ||||||||
Sbjct: 1 ctactactccctccgtcccaaaataa 26
>RF00906;MIR1122;AY821694.1/1308-1197 37674:Crithopsis delileana
Length = 112
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 7 ctactactccctccgtctcaaaataa 32
||||||||||||||||| ||||||||
Sbjct: 1 ctactactccctccgtcccaaaataa 26
>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
Length = 105
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tactccctccgtctcaaaataa 32
||||||||||||||||||||||
Sbjct: 5 tactccctccgtctcaaaataa 26
Score = 44.1 bits (22), Expect = 3e-04
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 11 tactccctccgtctcaaaataaatgatttaattttatattaagtttagtataaagttg 68
||||||||||||| |||||||| || |||| ||| || ||| ||||||| |||||||
Sbjct: 101 tactccctccgtcccaaaataagtgtcttaactttgtactaactttagtacaaagttg 44
>RF00906;MIR1122;FJ581044.1/175385-175266 4538:Oryza glaberrima
(African rice)
Length = 120
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 11 tactccctccgtctcaaaataa 32
||||||||||||||||||||||
Sbjct: 116 tactccctccgtctcaaaataa 95
>RF00906;MIR1122;AACV01008275.1/11041-11180 39947:Oryza sativa
Japonica Group
Length = 140
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 10 ctactccctccgtctcaaaata 31
||||||||||||||||||||||
Sbjct: 137 ctactccctccgtctcaaaata 116