miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;FJ477093.1/40908-41001 4513:Hordeum vulgare
          Length = 94

 Score = 69.9 bits (35), Expect = 6e-12
 Identities = 72/83 (86%), Gaps = 1/83 (1%)
 Strand = Plus / Plus

                                                                      
Query: 11 tactccctccgtctcaaaataaatgatttaattttatattaagtttagtataaagttgag 70
          ||||||||| ||| |||||||| ||| | || ||| || |||  ||||||||||||||||
Sbjct: 5  tactccctctgtcccaaaataagtgactcaactttgtactaaagttagtataaagttgag 64

                                 
Query: 71 tcactt-atttgggacggaggga 92
          |||||| ||||||||||||||||
Sbjct: 65 tcacttaatttgggacggaggga 87



 Score = 69.9 bits (35), Expect = 6e-12
 Identities = 72/83 (86%), Gaps = 1/83 (1%)
 Strand = Plus / Minus

                                                                      
Query: 11 tactccctccgtctcaaaataaatgatttaattttatattaagtttagtataaagttgag 70
          ||||||||||||| |||| ||| ||| | || |||||| ||| ||||||| |||||||||
Sbjct: 90 tactccctccgtcccaaattaagtgactcaactttatactaactttagtacaaagttgag 31

                                 
Query: 71 tcactta-tttgggacggaggga 92
          ||||||| |||||||| ||||||
Sbjct: 30 tcacttattttgggacagaggga 8




>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
          Length = 105

 Score = 60.0 bits (30), Expect = 6e-09
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                       
Query: 7   ctactactccctccgtctcaaaataaatgatttaattttatattaagtttagtataaagt 66
           ||||||||||||||||| |||||||||||  | || ||| |||||| ||||||| |||||
Sbjct: 105 ctactactccctccgtcccaaaataaatgtctcaactttgtattaactttagtacaaagt 46

             
Query: 67  tg 68
           ||
Sbjct: 45  tg 44




>RF00906;MIR1122;AF521177.1/81577-81474 4513:Hordeum vulgare
          Length = 104

 Score = 56.0 bits (28), Expect = 9e-08
 Identities = 38/40 (95%), Gaps = 1/40 (2%)
 Strand = Plus / Plus

                                                  
Query: 54 tttagtataaagttgagtcactta-tttgggacggaggga 92
          ||||||| |||||||||||||||| |||||||||||||||
Sbjct: 58 tttagtacaaagttgagtcacttattttgggacggaggga 97




>RF00906;MIR1122;U29095.1/333-439 4565:Triticum aestivum (bread
           wheat)
          Length = 107

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 37/39 (94%), Gaps = 1/39 (2%)
 Strand = Plus / Plus

                                                  
Query: 55  ttagtataaagttgagtcacttattt-gggacggaggga 92
           |||||| ||||||||||||||||||| ||||||||||||
Sbjct: 62  ttagtacaaagttgagtcacttatttcgggacggaggga 100




>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
          Length = 132

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 37/39 (94%), Gaps = 1/39 (2%)
 Strand = Plus / Minus

                                                 
Query: 55 ttagtataaagttgagtcactta-tttgggacggaggga 92
          |||||| |||||||||||||||| |||||||||||||||
Sbjct: 46 ttagtacaaagttgagtcacttattttgggacggaggga 8



 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 55  ttagtataaagttgagtcacttattt 80
           |||||| |||||||||||||||||||
Sbjct: 87  ttagtacaaagttgagtcacttattt 112




>RF00906;MIR1122;AY268139.1/69673-69778 4513:Hordeum vulgare
          Length = 106

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                 
Query: 11  tactccctccgtctcaaaataaatgatttaattttatattaagtttagtataaa 64
           |||| ||||||||||||||||| ||  |||| |||||||||| || ||||||||
Sbjct: 102 tacttcctccgtctcaaaataactgtcttaactttatattaatttcagtataaa 49




>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
          Length = 105

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                 
Query: 7   ctactactccctccgtctcaaaataaatgatttaattttatattaagtttagta 60
           ||||||||||||||||| |||||||||||  | || ||| |||||| |||||||
Sbjct: 105 ctactactccctccgtcccaaaataaatgtctcaactttgtattaactttagta 52




>RF00906;MIR1122;AY663392.1/117099-117203 4565:Triticum aestivum
           (bread wheat)
          Length = 105

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                    
Query: 11  tactccctccgtctcaaaataaatgatttaattttatattaagtttagtataaagtt 67
           |||||||||| || |||||||| ||  |||||||| |||||  ||||||||||||||
Sbjct: 101 tactccctccatcccaaaataagtgtgttaattttgtattagctttagtataaagtt 45




>RF00906;MIR1122;EU282768.1/632-528 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 105

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 8   tactactccctccgtctcaaaataa 32
           |||||||||||||||||||||||||
Sbjct: 104 tactactccctccgtctcaaaataa 80




>RF00906;MIR1122;EU282771.1/632-528 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 105

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 8   tactactccctccgtctcaaaataa 32
           |||||||||||||||||||||||||
Sbjct: 104 tactactccctccgtctcaaaataa 80




>RF00906;MIR1122;AC192352.2/55884-55804 3880:Medicago truncatula
          (barrel medic)
          Length = 81

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                  
Query: 8  tactactccctccgtctcaaaata 31
          ||||||||||||||||||||||||
Sbjct: 80 tactactccctccgtctcaaaata 57



 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 10 ctactccctccgtctcaaaata 31
          ||||||||||||||||||||||
Sbjct: 4  ctactccctccgtctcaaaata 25




>RF00906;MIR1122;FJ374624.1/2920-2820 4572:Triticum urartu
          Length = 101

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 34/36 (94%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                              
Query: 55 ttagtataaagttgagtcactta-tttgggacggag 89
          |||||| |||||||||||||||| ||||||||||||
Sbjct: 46 ttagtacaaagttgagtcacttactttgggacggag 11



 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 55 ttagtataaagttgagtcacttattt 80
          |||||| |||||||||||||||||||
Sbjct: 56 ttagtacaaagttgagtcacttattt 81




>RF00906;MIR1122;AB239678.1/2131-2247 52163:Triticum monococcum
          subsp. aegilopoides
          Length = 117

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 31/32 (96%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                          
Query: 62 aaagttgagtcactta-tttgggacggaggga 92
          |||||||||||||||| |||||||||||||||
Sbjct: 39 aaagttgagtcacttaatttgggacggaggga 8




>RF00906;MIR1122;EU282770.1/593-711 112509:Hordeum vulgare subsp.
          vulgare (domesticated barley)
          Length = 119

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 8  tactactccctccgtctcaaaata 31
          ||||||||||||||||||||||||
Sbjct: 2  tactactccctccgtctcaaaata 25




>RF00906;MIR1122;AAAA02022195.1/27114-27226 39946:Oryza sativa
          Indica Group
          Length = 113

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 11 tactccctccgtctcaaaataaat 34
          ||||||||||||||||||||||||
Sbjct: 5  tactccctccgtctcaaaataaat 28




>RF00906;MIR1122;EU626553.1/80133-80237 4572:Triticum urartu
          Length = 105

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                         
Query: 43 tttatattaagtttagtataaagttgagtca 73
          ||||||||||  |||||||||||||||||||
Sbjct: 58 tttatattaaagttagtataaagttgagtca 28




>RF00906;MIR1122;AF181455.1/3108-2994 4513:Hordeum vulgare
          Length = 115

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                 
Query: 31 aaatgatttaattttatattaagtttagtataaagttga 69
          |||||||||||||||||| |||  ||||| |||||||||
Sbjct: 35 aaatgatttaattttatagtaaagttagtgtaaagttga 73



 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                            
Query: 66 ttgagtcacttatttgggacggagggaatacatg 99
          |||||||| || ||||||||||||||| ||||||
Sbjct: 34 ttgagtcatttttttgggacggagggagtacatg 1




>RF00906;MIR1122;DQ445238.1/5626-5730 112509:Hordeum vulgare
          subsp. vulgare (domesticated barley)
          Length = 105

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 45/51 (88%), Gaps = 1/51 (1%)
 Strand = Plus / Plus

                                                             
Query: 43 tttatattaagtttagtataaagttgagtcactta-tttgggacggaggga 92
          |||||||||  | ||||||||||||||| || ||| |||||||||||||||
Sbjct: 48 tttatattagatctagtataaagttgagacagttattttgggacggaggga 98




>RF00906;MIR1122;AAAA02004858.1/41238-41369 39946:Oryza sativa
          Indica Group
          Length = 132

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 7  ctactactccctccgtctcaaaa 29
          |||||||||||||||||||||||
Sbjct: 1  ctactactccctccgtctcaaaa 23




>RF00906;MIR1122;AACV01002208.1/17153-17286 39947:Oryza sativa
           Japonica Group
          Length = 134

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 9   actactccctccgtctcaaaata 31
           |||||||||||||||||||||||
Sbjct: 132 actactccctccgtctcaaaata 110




>RF00906;MIR1122;CR855136.1/20944-20809 4530:Oryza sativa (rice)
          Length = 136

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 9   actactccctccgtctcaaaata 31
           |||||||||||||||||||||||
Sbjct: 134 actactccctccgtctcaaaata 112




>RF00906;MIR1122;AAAA02026943.1/18413-18317 39946:Oryza sativa
          Indica Group
          Length = 97

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                 
Query: 11 tactccctccgtctcaaaataaa 33
          |||||||||||||||||||||||
Sbjct: 93 tactccctccgtctcaaaataaa 71




>RF01058;MIR806;AAAA02021561.1/35714-35484 39946:Oryza sativa
          Indica Group
          Length = 231

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 tactccctccgtctcaaaataa 32
          ||||||||||||||||||||||
Sbjct: 2  tactccctccgtctcaaaataa 23




>RF00906;MIR1122;DQ901436.1/1229-1333 4565:Triticum aestivum
          (bread wheat)
          Length = 105

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 35/38 (92%), Gaps = 1/38 (2%)
 Strand = Plus / Minus

                                                
Query: 56 tagtataaagttgagtcacttattt-gggacggaggga 92
          ||||| ||||||||| ||||||||| ||||||||||||
Sbjct: 45 tagtacaaagttgagacacttattttgggacggaggga 8




>RF00906;MIR1122;AJ249141.1/1014-910 4513:Hordeum vulgare
          Length = 105

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 11  tactccctccgtctcaaaataa 32
           ||||||||||||||||||||||
Sbjct: 101 tactccctccgtctcaaaataa 80




>RF00906;MIR1122;AJ234583.1/157-260 4513:Hordeum vulgare
          Length = 104

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 tactccctccgtctcaaaataa 32
          ||||||||||||||||||||||
Sbjct: 5  tactccctccgtctcaaaataa 26



 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 11  tactccctccgtctcaaaataa 32
           ||||||||||||||||||||||
Sbjct: 100 tactccctccgtctcaaaataa 79




>RF00906;MIR1122;AK249560.1/988-1092 112509:Hordeum vulgare subsp.
          vulgare (domesticated barley)
          Length = 105

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 32/34 (94%), Gaps = 1/34 (2%)
 Strand = Plus / Minus

                                            
Query: 56 tagtataaagttgagtcactta-tttgggacgga 88
          ||||||||||||||| |||||| |||||||||||
Sbjct: 45 tagtataaagttgagacacttattttgggacgga 12




>RF00906;MIR1122;AF521177.1/206122-206018 4513:Hordeum vulgare
          Length = 105

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 10  ctactccctccgtctcaaaataaatg 35
           ||||||||||||| ||||||||||||
Sbjct: 102 ctactccctccgtttcaaaataaatg 77




>RF00906;MIR1122;DQ995510.1/1615-1718 4513:Hordeum vulgare
          Length = 104

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 tactccctccgtctcaaaataa 32
          ||||||||||||||||||||||
Sbjct: 5  tactccctccgtctcaaaataa 26




>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
          vulgare (domesticated barley)
          Length = 105

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 35/38 (92%), Gaps = 1/38 (2%)
 Strand = Plus / Plus

                                                
Query: 56 tagtataaagttgagtcacttattt-gggacggaggga 92
          ||||| ||||||||| ||||||||| ||||||||||||
Sbjct: 61 tagtacaaagttgagacacttattttgggacggaggga 98




>RF00906;MIR1122;AJ234485.1/114-218 4513:Hordeum vulgare
          Length = 105

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 tactccctccgtctcaaaataa 32
          ||||||||||||||||||||||
Sbjct: 5  tactccctccgtctcaaaataa 26




>RF00906;MIR1122;EU593539.1/914-1018 4513:Hordeum vulgare
          Length = 105

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 35/38 (92%), Gaps = 1/38 (2%)
 Strand = Plus / Plus

                                                
Query: 56 tagtataaagttgagtcactta-tttgggacggaggga 92
          ||||||||||||||| || ||| |||||||||||||||
Sbjct: 61 tagtataaagttgagacagttattttgggacggaggga 98




>RF00906;MIR1122;EU282251.1/1314-1209 52152:Elymus repens
          Length = 106

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 7  ctactactccctccgtctcaaaataa 32
          ||||||||||||||||| ||||||||
Sbjct: 1  ctactactccctccgtcccaaaataa 26




>RF00906;MIR1122;AY821694.1/1308-1197 37674:Crithopsis delileana
          Length = 112

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 7  ctactactccctccgtctcaaaataa 32
          ||||||||||||||||| ||||||||
Sbjct: 1  ctactactccctccgtcccaaaataa 26




>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
          Length = 105

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 tactccctccgtctcaaaataa 32
          ||||||||||||||||||||||
Sbjct: 5  tactccctccgtctcaaaataa 26



 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                     
Query: 11  tactccctccgtctcaaaataaatgatttaattttatattaagtttagtataaagttg 68
           ||||||||||||| |||||||| ||  |||| ||| || ||| ||||||| |||||||
Sbjct: 101 tactccctccgtcccaaaataagtgtcttaactttgtactaactttagtacaaagttg 44




>RF00906;MIR1122;FJ581044.1/175385-175266 4538:Oryza glaberrima
           (African rice)
          Length = 120

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 11  tactccctccgtctcaaaataa 32
           ||||||||||||||||||||||
Sbjct: 116 tactccctccgtctcaaaataa 95




>RF00906;MIR1122;AACV01008275.1/11041-11180 39947:Oryza sativa
           Japonica Group
          Length = 140

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 10  ctactccctccgtctcaaaata 31
           ||||||||||||||||||||||
Sbjct: 137 ctactccctccgtctcaaaata 116