miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;DQ901436.1/1229-1333 4565:Triticum aestivum
          (bread wheat)
          Length = 105

 Score = 79.8 bits (40), Expect = 7e-15
 Identities = 70/80 (87%)
 Strand = Plus / Plus

                                                                      
Query: 19 ctccgtcctaaaataagtgtcttaattttttatcagctttaatacaaagttatattatgg 78
          |||||||| ||||||||||||| || ||| ||  ||||||||||||||||| || ||  |
Sbjct: 11 ctccgtcccaaaataagtgtctcaactttgtactagctttaatacaaagttgtactagag 70

                              
Query: 79 ttgagacacttattttgaga 98
          ||||||||||||||||||||
Sbjct: 71 ttgagacacttattttgaga 90




>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
          Length = 105

 Score = 79.8 bits (40), Expect = 7e-15
 Identities = 79/92 (85%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactctctccgtcctaaaataagtgtcttaattttttatcagctttaatacaaagttata 72
           ||||| |||||||| |||||||||||||||| ||| ||  | ||||| ||||||||| ||
Sbjct: 101 tactccctccgtcccaaaataagtgtcttaactttgtactaactttagtacaaagttgta 42

                                           
Query: 73  ttatggttgagacacttattttgagaccgagg 104
            || | ||||||||||||||||||||| ||||
Sbjct: 41  ctaggcttgagacacttattttgagacggagg 10




>RF00906;MIR1122;AY663392.1/117099-117203 4565:Triticum aestivum
           (bread wheat)
          Length = 105

 Score = 77.8 bits (39), Expect = 3e-14
 Identities = 72/83 (86%)
 Strand = Plus / Minus

                                                                       
Query: 12  atactctctccgtcctaaaataagtgtcttaattttttatcagctttaatacaaagttat 71
           |||||| |||| ||| ||||||||||| |||||||| ||| ||||||| || ||||||||
Sbjct: 102 atactccctccatcccaaaataagtgtgttaattttgtattagctttagtataaagttat 43

                                  
Query: 72  attatggttgagacacttatttt 94
           | || | ||||||||||||||||
Sbjct: 42  actaagattgagacacttatttt 20




>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
          Length = 105

 Score = 63.9 bits (32), Expect = 4e-10
 Identities = 77/92 (83%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactctctccgtcctaaaataagtgtcttaattttttatcagctttaatacaaagttata 72
           ||||| |||||||| ||||||| ||||| || ||| ||| | ||||| ||||||||| ||
Sbjct: 101 tactccctccgtcccaaaataaatgtctcaactttgtattaactttagtacaaagttgta 42

                                           
Query: 73  ttatggttgagacacttattttgagaccgagg 104
            || | ||||||||||||||||| ||| ||||
Sbjct: 41  ctaagcttgagacacttattttgggacggagg 10



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 11 tatactctctccgtcctaaaataagtgtct 40
          ||||||| |||||||| |||||||||||||
Sbjct: 3  tatactccctccgtcccaaaataagtgtct 32




>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 105

 Score = 61.9 bits (31), Expect = 2e-09
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                       
Query: 10  atatactctctccgtcctaaaataagtgtcttaattttttatcagctttaatacaaagtt 69
           |||||||| |||||||| ||||||||||||| || ||| ||  |||| || |||||| ||
Sbjct: 104 atatactccctccgtcccaaaataagtgtctcaactttgtactagctgtagtacaaaatt 45

                                              
Query: 70  atattatggttgagacacttattttgagaccgagg 104
           | | || | ||||||||||||||||| ||| ||||
Sbjct: 44  acactaagcttgagacacttattttgggacggagg 10




>RF00906;MIR1122;AJ400714.1/3663-3767 4565:Triticum aestivum (bread
           wheat)
          Length = 105

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 71/85 (83%)
 Strand = Plus / Plus

                                                                       
Query: 20  tccgtcctaaaataagtgtcttaattttttatcagctttaatacaaagttatattatggt 79
           ||||||| ||||||||||||| ||||||  |  | || || ||||||||| || || |||
Sbjct: 12  tccgtcccaaaataagtgtctcaattttacactaactctagtacaaagttgtactaaggt 71

                                    
Query: 80  tgagacacttattttgagaccgagg 104
           |||||||||||||||| ||| ||||
Sbjct: 72  tgagacacttattttgggacggagg 96



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 11  tatactctctccgtcctaaaataagtgtct 40
           ||||||| |||||||| |||||||||||||
Sbjct: 103 tatactccctccgtcccaaaataagtgtct 74




>RF00906;MIR1122;AJ234583.1/157-260 4513:Hordeum vulgare
          Length = 104

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 78/93 (83%), Gaps = 1/93 (1%)
 Strand = Plus / Plus

                                                                       
Query: 12  atactctctccgtcctaaaataagtgtcttaattttttatcagctttaatacaaagttat 71
           |||||| |||||||  ||||||||| |||||||||| ||  ||||| | | |||||||||
Sbjct: 4   atactccctccgtctcaaaataagtttcttaattttatactagctt-agtgcaaagttat 62

                                            
Query: 72  attatggttgagacacttattttgagaccgagg 104
           | || | |||||||| |||||||||||| ||||
Sbjct: 63  actaagcttgagacaattattttgagacggagg 95




>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
          Length = 105

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 76/92 (82%)
 Strand = Plus / Minus

                                                                       
Query: 13  tactctctccgtcctaaaataagtgtcttaattttttatcagctttaatacaaagttata 72
           ||||| |||||||| ||||||| ||||| || ||| ||| | ||||| ||||| ||| ||
Sbjct: 101 tactccctccgtcccaaaataaatgtctcaactttgtattaactttagtacaaggttgta 42

                                           
Query: 73  ttatggttgagacacttattttgagaccgagg 104
            || | ||||||||||||||||| ||| ||||
Sbjct: 41  ctaagcttgagacacttattttgggacggagg 10



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 11 tatactctctccgtcctaaaataagtgtct 40
          ||||||| |||||||| |||||||||||||
Sbjct: 3  tatactccctccgtcccaaaataagtgtct 32




>RF00906;MIR1122;AJ249141.1/1014-910 4513:Hordeum vulgare
          Length = 105

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 77/94 (81%)
 Strand = Plus / Minus

                                                                       
Query: 11  tatactctctccgtcctaaaataagtgtcttaattttttatcagctttaatacaaagtta 70
           ||||||| |||||||  ||||||| ||||| || ||| ||| |||| || ||||||||| 
Sbjct: 103 tatactccctccgtctcaaaataactgtctcaactttgtattagctctagtacaaagttg 44

                                             
Query: 71  tattatggttgagacacttattttgagaccgagg 104
           || || | || |||||||||||||  ||||||||
Sbjct: 43  tactaagcttaagacacttattttaggaccgagg 10



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                            
Query: 10 atatactctctccgtcctaaaataagtgtcttaa 43
          ||||| || ||| |||||||||||||||||||||
Sbjct: 2  atatattccctcggtcctaaaataagtgtcttaa 35




>RF00906;MIR1122;AY943294.1/62260-62364 112509:Hordeum vulgare
          subsp. vulgare (domesticated barley)
          Length = 105

 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 64/77 (83%)
 Strand = Plus / Minus

                                                                      
Query: 19 ctccgtcctaaaataagtgtcttaattttttatcagctttaatacaaagttatattatgg 78
          |||||||| ||||||| ||||| || ||| ||| || |||| |||||| || ||||| | 
Sbjct: 95 ctccgtcccaaaataactgtctcaactttgtattagatttagtacaaaattgtattaagc 36

                           
Query: 79 ttgagacacttattttg 95
          || ||||||||||||||
Sbjct: 35 ttaagacacttattttg 19




>RF00906;MIR1122;AK249560.1/988-1092 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 105

 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 70/85 (82%)
 Strand = Plus / Plus

                                                                       
Query: 20  tccgtcctaaaataagtgtcttaattttttatcagctttaatacaaagttatattatggt 79
           ||||||| ||||||||||||| || ||| ||  |||| || |||||| || ||||| | |
Sbjct: 12  tccgtcccaaaataagtgtctcaactttatactagctatagtacaaacttgtattaagtt 71

                                    
Query: 80  tgagacacttattttgagaccgagg 104
           ||||||| |||||||| ||| ||||
Sbjct: 72  tgagacagttattttgggacggagg 96




>RF00906;MIR1122;DQ175992.1/50-154 112509:Hordeum vulgare subsp.
          vulgare (domesticated barley)
          Length = 105

 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                           
Query: 11 tatactctctccgtcctaaaataagtgtcttaa 43
          ||||||||||||||  |||||||||||||||||
Sbjct: 3  tatactctctccgttttaaaataagtgtcttaa 35




>RF00906;MIR1122;AAAA02012804.1/5494-5367 39946:Oryza sativa
          Indica Group
          Length = 128

 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 9  catatactctctccgtcctaaaata 33
          |||||||||||||||||||||||||
Sbjct: 1  catatactctctccgtcctaaaata 25




>RF00906;MIR1122;AB183299.1/312-404 4565:Triticum aestivum (bread
           wheat)
          Length = 93

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                       
Query: 61  tacaaagttatattatggttgagacacttattttgagaccgagg 104
           |||||||||||| ||  |||||||||||||||||| ||| ||||
Sbjct: 53  tacaaagttatactaaagttgagacacttattttgggacggagg 10




>RF00906;MIR1122;DQ900687.1/24296-24401 112509:Hordeum vulgare
           subsp. vulgare (domesticated barley)
          Length = 106

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 12  atactctctccgtcctaaaataagtgtc 39
           |||||| |||||||||||||||||||||
Sbjct: 103 atactccctccgtcctaaaataagtgtc 76




>RF00906;MIR1122;AK249769.1/2180-2285 112509:Hordeum vulgare
          subsp. vulgare (domesticated barley)
          Length = 106

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                         
Query: 9  catatactctctccgtcctaaaataagtgtc 39
          ||||||||| ||||||| |||||||||||||
Sbjct: 1  catatactccctccgtcttaaaataagtgtc 31




>RF00906;MIR1122;X83518.1/7301-7197 4513:Hordeum vulgare
          Length = 105

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 59/71 (83%)
 Strand = Plus / Minus

                                                                      
Query: 28 aaaataagtgtcttaattttttatcagctttaatacaaagttatattatggttgagacac 87
          ||||||||||||| || ||| ||  |||| || ||||||||| || || | |||||||| 
Sbjct: 86 aaaataagtgtctcaactttgtactagctctactacaaagttgtactaagcttgagacag 27

                     
Query: 88 ttattttgaga 98
          |||||||||||
Sbjct: 26 ttattttgaga 16




>RF00906;MIR1122;FJ184990.1/3303-3406 4565:Triticum aestivum
          (bread wheat)
          Length = 104

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 11 tatactctctccgtcctaaaataagtgtct 40
          ||||||| |||||||| |||||||||||||
Sbjct: 3  tatactccctccgtcccaaaataagtgtct 32




>RF00906;MIR1122;DQ871219.1/106890-106994 85692:Triticum turgidum
          subsp. dicoccoides
          Length = 105

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 12 atactctctccgtcctaaaataagtgtctt 41
          |||||| |||||||| ||||||||||||||
Sbjct: 4  atactccctccgtcccaaaataagtgtctt 33




>RF00906;MIR1122;AAAA02021653.1/16520-16652 39946:Oryza sativa
          Indica Group
          Length = 133

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 12 atactctctccgtcctaaaata 33
          ||||||||||||||||||||||
Sbjct: 4  atactctctccgtcctaaaata 25




>RF00906;MIR1122;CR855136.1/20944-20809 4530:Oryza sativa (rice)
          Length = 136

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 12 atactctctccgtcctaaaata 33
          ||||||||||||||||||||||
Sbjct: 4  atactctctccgtcctaaaata 25