miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;DQ995513.1/14600-14508 4513:Hordeum vulgare
Length = 93
Score = 103 bits (52), Expect = 4e-22
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 12 ctctgtaaacaaatataagagcatttagatcactaaagtagtgatttaaacgctcttata 71
||||||||| |||||||||||| ||||||||||| |||||||||| ||||||||||||||
Sbjct: 11 ctctgtaaagaaatataagagcgtttagatcactgaagtagtgatctaaacgctcttata 70
Query: 72 tttcttta 79
||||||||
Sbjct: 71 tttcttta 78
Score = 79.8 bits (40), Expect = 6e-15
Identities = 61/68 (89%)
Strand = Plus / Minus
Query: 12 ctctgtaaacaaatataagagcatttagatcactaaagtagtgatttaaacgctcttata 71
||||||||| |||||||||||| |||||||||||| |||||| ||||||||||||||
Sbjct: 83 ctctgtaaagaaatataagagcgtttagatcactacttcagtgatctaaacgctcttata 24
Query: 72 tttcttta 79
||||||||
Sbjct: 23 tttcttta 16
>RF00906;MIR1122;X83518.1/7623-7532 4513:Hordeum vulgare
Length = 92
Score = 103 bits (52), Expect = 4e-22
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 6 tactctctctgtaaacaaatataagagcatttagatcactaaagtagtgatttaaacgct 65
||||| |||||||||| ||||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttagatcactaaagtagtgatctaaacgct 64
Query: 66 cttatatt 73
||||||||
Sbjct: 65 cttatatt 72
Score = 61.9 bits (31), Expect = 1e-09
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 23 aatataagagcatttagatcactaaagtagtgatttaaacgctcttatatt 73
||||||||||| |||||||||||| ||||||| ||||||||||||||||
Sbjct: 72 aatataagagcgtttagatcactactttagtgatctaaacgctcttatatt 22
>RF00906;MIR1122;EU200767.1/3655-3563 37682:Aegilops tauschii
Length = 93
Score = 99.6 bits (50), Expect = 6e-21
Identities = 68/74 (91%)
Strand = Plus / Plus
Query: 6 tactctctctgtaaacaaatataagagcatttagatcactaaagtagtgatttaaacgct 65
||||| ||||||||||||||||||| || |||||||| ||||| ||||||| ||||||||
Sbjct: 5 tactccctctgtaaacaaatataagggcgtttagatctctaaaatagtgatctaaacgct 64
Query: 66 cttatatttcttta 79
||||||||||||||
Sbjct: 65 cttatatttcttta 78
Score = 56.0 bits (28), Expect = 8e-08
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 16 gtaaacaaatataagagcatttagatcactaaagtagtgatttaaacgctcttatatttc 75
||||| |||||||||||| |||||||||||| ||| ||| ||||||| |||||||||
Sbjct: 79 gtaaagaaatataagagcgtttagatcactattttagagatctaaacgcccttatatttg 20
Query: 76 ttta 79
||||
Sbjct: 19 ttta 16
>RF00906;MIR1122;AJ400713.1/2799-2707 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 95.6 bits (48), Expect = 1e-19
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 6 tactctctctgtaaacaaatataagagcatttagatcactaaagtagtgatttaaacgct 65
||||| |||||||||| |||||||||||||||||||||||||| |||| || ||||||||
Sbjct: 5 tactccctctgtaaactaatataagagcatttagatcactaaaatagtaatctaaacgct 64
Query: 66 cttatatt 73
||||||||
Sbjct: 65 cttatatt 72
Score = 56.0 bits (28), Expect = 8e-08
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 6 tactctctctgtaaacaaatataagagcatttagatcactaaagtagtgatttaaacgct 65
||||| ||| |||||| ||||||||||| ||||||| |||| ||||||| |||| |||
Sbjct: 89 tactccctccgtaaactaatataagagcgtttagattactattttagtgatctaaatgct 30
Query: 66 cttatatt 73
||||||||
Sbjct: 29 cttatatt 22
>RF00906;MIR1122;AM932685.1/163196-163288 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 91.7 bits (46), Expect = 2e-18
Identities = 64/70 (91%)
Strand = Plus / Minus
Query: 4 tctactctctctgtaaacaaatataagagcatttagatcactaaagtagtgatttaaacg 63
||||||| |||||||||| ||||||||||| ||||||||||||||||||||| ||| ||
Sbjct: 91 tctactccctctgtaaactaatataagagcgcttagatcactaaagtagtgatctaagcg 32
Query: 64 ctcttatatt 73
||||||||||
Sbjct: 31 ctcttatatt 22
Score = 63.9 bits (32), Expect = 3e-10
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 6 tactctctctgtaaacaaatataagagcatttagatcactaaagtagtgatttaaacgct 65
||||| |||||||||| ||||||||||| ||||||||||| ||||||| ||| ||||
Sbjct: 5 tactccctctgtaaactaatataagagcgcttagatcactactttagtgatctaagcgct 64
Query: 66 cttatatt 73
||||||||
Sbjct: 65 cttatatt 72
>RF00906;MIR1122;AY747601.1/4943-5034 4565:Triticum aestivum
(bread wheat)
Length = 92
Score = 91.7 bits (46), Expect = 2e-18
Identities = 64/70 (91%)
Strand = Plus / Minus
Query: 16 gtaaacaaatataagagcatttagatcactaaagtagtgatttaaacgctcttatatttc 75
|||||||||||||||||| || |||||||| ||||||||| ||||||||||||||||||
Sbjct: 79 gtaaacaaatataagagcgttcagatcactcaagtagtgacctaaacgctcttatatttc 20
Query: 76 tttaaggagg 85
|||| |||||
Sbjct: 19 tttacggagg 10
Score = 52.0 bits (26), Expect = 1e-06
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 6 tactctctctgtaaacaaatataagagcatttagatcactaaagtagtgatttaaacgct 65
||||| ||| ||||| |||||||||||| ||||| |||||| |||||| | ||||||
Sbjct: 5 tactccctccgtaaagaaatataagagcgtttaggtcactacttgagtgatctgaacgct 64
Query: 66 cttatatttcttta 79
||||||||| ||||
Sbjct: 65 cttatatttgttta 78
>RF00906;MIR1122;FM164415.1/12272-12364 4513:Hordeum vulgare
Length = 93
Score = 89.7 bits (45), Expect = 6e-18
Identities = 66/73 (90%)
Strand = Plus / Plus
Query: 13 tctgtaaacaaatataagagcatttagatcactaaagtagtgatttaaacgctcttatat 72
|||||||| |||||||||||| | ||||||||||||||||| || ||||| |||||||||
Sbjct: 12 tctgtaaagaaatataagagcgtctagatcactaaagtagttatctaaacactcttatat 71
Query: 73 ttctttaaggagg 85
||||||| |||||
Sbjct: 72 ttctttacggagg 84
Score = 61.9 bits (31), Expect = 1e-09
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 5 ctactctctctgtaaacaaatataagagcatttagatcactaaagtagtgatttaaacgc 64
|||||| ||| ||||| ||||||||||| ||||||| |||| ||||||| || ||||
Sbjct: 90 ctactccctccgtaaagaaatataagagtgtttagataactactttagtgatctagacgc 31
Query: 65 tcttatatttcttta 79
|||||||||||||||
Sbjct: 30 tcttatatttcttta 16
>RF00906;MIR1122;DQ885765.1/4441-4533 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 87.7 bits (44), Expect = 2e-17
Identities = 71/80 (88%)
Strand = Plus / Plus
Query: 6 tactctctctgtaaacaaatataagagcatttagatcactaaagtagtgatttaaacgct 65
||||| |||||||||| |||||||||||||| ||||||||| ||||||| |||| |||
Sbjct: 5 tactccctctgtaaactaatataagagcattcagatcactactttagtgatctaaatgct 64
Query: 66 cttatatttctttaaggagg 85
|||||||||||||| |||||
Sbjct: 65 cttatatttctttacggagg 84
Score = 87.7 bits (44), Expect = 2e-17
Identities = 62/68 (91%)
Strand = Plus / Minus
Query: 6 tactctctctgtaaacaaatataagagcatttagatcactaaagtagtgatttaaacgct 65
||||| ||| ||||| ||||||||||||||||||||||||||||||||||| | || |||
Sbjct: 89 tactccctccgtaaagaaatataagagcatttagatcactaaagtagtgatctgaatgct 30
Query: 66 cttatatt 73
||||||||
Sbjct: 29 cttatatt 22
>RF00906;MIR1122;EU282676.1/869-732 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 138
Score = 87.7 bits (44), Expect = 2e-17
Identities = 62/68 (91%)
Strand = Plus / Minus
Query: 6 tactctctctgtaaacaaatataagagcatttagatcactaaagtagtgatttaaacgct 65
||||| ||| |||||| ||||||||||||||||||||| |||| ||||||| ||||||||
Sbjct: 134 tactccctccgtaaactaatataagagcatttagatcattaaaatagtgatctaaacgct 75
Query: 66 cttatatt 73
||||||||
Sbjct: 74 cttatatt 67
Score = 46.1 bits (23), Expect = 8e-05
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 23 aatataagagcatttagatcactaaagtagtgatttaaacgctcttatatt 73
||||||||||| |||||||||||| || |||| |||| |||||||||||
Sbjct: 67 aatataagagcgtttagatcactattttaatgatctaaatgctcttatatt 117
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 6 tactctctctgtaaacaaatataagagcatttag 39
||||| |||||||||| ||||||||||| |||||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttag 38
>RF00906;MIR1122;FJ711024.1/1206-1298 37717:Agropyron mongolicum
Length = 93
Score = 87.7 bits (44), Expect = 2e-17
Identities = 65/72 (90%)
Strand = Plus / Plus
Query: 2 tttctactctctctgtaaacaaatataagagcatttagatcactaaagtagtgatttaaa 61
||||||||| ||||||||| ||||||||||| ||| |||||||||| ||||||| ||||
Sbjct: 1 tttctactccctctgtaaattaatataagagcgtttggatcactaaaatagtgatctaaa 60
Query: 62 cgctcttatatt 73
||||||||||||
Sbjct: 61 cgctcttatatt 72
Score = 60.0 bits (30), Expect = 5e-09
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 16 gtaaacaaatataagagcatttagatcactaaagtagtgatttaaacgctcttatatt 73
|||||| ||||||||||| |||||||||||| ||||||| |||||||||||||||
Sbjct: 79 gtaaactaatataagagcgtttagatcactattttagtgatccaaacgctcttatatt 22
>RF00906;MIR1122;EU660903.1/5594-5502 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 83.8 bits (42), Expect = 4e-16
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 6 tactctctctgtaaacaaatataagagcatttagatcactaaagtagtgatttaaacgct 65
||||| ||| ||||| |||||||||||| |||||| |||||||||||| || |||| |||
Sbjct: 5 tactccctcggtaaagaaatataagagcgtttagagcactaaagtagttatctaaatgct 64
Query: 66 cttatatttcttta 79
||||||||||||||
Sbjct: 65 cttatatttcttta 78
Score = 75.8 bits (38), Expect = 9e-14
Identities = 65/74 (87%)
Strand = Plus / Minus
Query: 6 tactctctctgtaaacaaatataagagcatttagatcactaaagtagtgatttaaacgct 65
||||| |||| |||| |||||||||||||||||||| |||| ||||| | ||||||||
Sbjct: 89 tactccctctataaagaaatataagagcatttagataactactttagtgctctaaacgct 30
Query: 66 cttatatttcttta 79
||||||||||||||
Sbjct: 29 cttatatttcttta 16
>RF00906;MIR1122;AY133248.1/2807-2899 37682:Aegilops tauschii
Length = 93
Score = 83.8 bits (42), Expect = 4e-16
Identities = 63/70 (90%)
Strand = Plus / Minus
Query: 4 tctactctctctgtaaacaaatataagagcatttagatcactaaagtagtgatttaaacg 63
||||||| ||||||||| | ||||||||| ||||||||||||||||||| || ||||||
Sbjct: 91 tctactccgtctgtaaactactataagagcgtttagatcactaaagtagtaatctaaacg 32
Query: 64 ctcttatatt 73
||||||||||
Sbjct: 31 ctcttatatt 22
Score = 52.0 bits (26), Expect = 1e-06
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 6 tactctctctgtaaacaaatataagagcatttagatcactaaagtagtgatttaaacgct 65
||||| ||| ||||| ||||||||||| ||||||| |||| ||||||| ||||||||
Sbjct: 5 tactccctccgtaaattaatataagagcgtttagattactactttagtgatctaaacgct 64
Query: 66 cttata 71
||||||
Sbjct: 65 cttata 70
>RF00906;MIR1122;EF540321.1/152068-151976 4571:Triticum turgidum
Length = 93
Score = 79.8 bits (40), Expect = 6e-15
Identities = 61/68 (89%)
Strand = Plus / Minus
Query: 6 tactctctctgtaaacaaatataagagcatttagatcactaaagtagtgatttaaacgct 65
||||| |||||||||| ||||||| | ||||||||||||||||||||| || ||||| ||
Sbjct: 89 tactccctctgtaaactaatataaaaacatttagatcactaaagtagtaatctaaacact 30
Query: 66 cttatatt 73
||||||||
Sbjct: 29 cttatatt 22
>RF00906;MIR1122;DQ295068.1/1030-931 4550:Secale cereale (rye)
Length = 100
Score = 79.8 bits (40), Expect = 6e-15
Identities = 52/56 (92%)
Strand = Plus / Plus
Query: 6 tactctctctgtaaacaaatataagagcatttagatcactaaagtagtgatttaaa 61
||||| |||||||||| ||||||||||| |||||||||||||||||||||| ||||
Sbjct: 5 tactccctctgtaaactaatataagagcttttagatcactaaagtagtgatctaaa 60
>RF00906;MIR1122;AJ507214.1/4285-4377 4513:Hordeum vulgare
Length = 93
Score = 77.8 bits (39), Expect = 2e-14
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 12 ctctgtaaacaaatataagagcatttagatcactaaagtagtgatttaaacgctcttata 71
|||||||||||||||||||||| |||||||||||| ||||||| || || ||||||||
Sbjct: 11 ctctgtaaacaaatataagagcgtttagatcactactttagtgatctagacactcttata 70
Query: 72 tttcttt 78
|||||||
Sbjct: 71 tttcttt 77
Score = 75.8 bits (38), Expect = 9e-14
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 22 aaatataagagcatttagatcactaaagtagtgatttaaacgctcttatatttcttta 79
||||||||||| | |||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 73 aaatataagagtgtctagatcactaaagtagtgatctaaacgctcttatatttgttta 16
>RF00906;MIR1122;AF458279.1/188-280 4568:Triticum monococcum
Length = 93
Score = 75.8 bits (38), Expect = 9e-14
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 12 ctctgtaaacaaatataagagcatttagatcactaaagtagtgatttaaacgctcttata 71
|||||||||| ||||||||| | |||||||||||||||||||||| |||| | |||||||
Sbjct: 11 ctctgtaaactaatataagaccttttagatcactaaagtagtgatctaaaaggtcttata 70
Query: 72 tt 73
||
Sbjct: 71 tt 72
Score = 56.0 bits (28), Expect = 8e-08
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 6 tactctctctgtaaacaaatataagagcatttagatcactaaagtagtgatttaaacgct 65
||||| |||||||||| ||||||||| | |||||||||||| ||||||| |||| | |
Sbjct: 89 tactccctctgtaaactaatataagaccttttagatcactactttagtgatctaaaaggt 30
Query: 66 cttatatt 73
||||||||
Sbjct: 29 cttatatt 22
>RF00906;MIR1122;AM932680.1/146155-146063 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 75.8 bits (38), Expect = 9e-14
Identities = 56/62 (90%)
Strand = Plus / Minus
Query: 12 ctctgtaaacaaatataagagcatttagatcactaaagtagtgatttaaacgctcttata 71
|||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 83 ctctgtaaactaatataagagcatttagatcactattttagtgacctaaacgctcttata 24
Query: 72 tt 73
||
Sbjct: 23 tt 22
Score = 71.9 bits (36), Expect = 1e-12
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 6 tactctctctgtaaacaaatataagagcatttagatcactaaagtagtgatttaaacgct 65
||||| ||| |||||| ||||||||||| ||||| |||||||| ||||||| |||| |||
Sbjct: 5 tactccctccgtaaactaatataagagcgtttaggtcactaaaatagtgatctaaatgct 64
Query: 66 cttatatt 73
||||||||
Sbjct: 65 cttatatt 72
>RF00906;MIR1122;EU282299.1/528-618 97361:Hordeum murinum
Length = 91
Score = 75.8 bits (38), Expect = 9e-14
Identities = 57/62 (91%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 12 ctctgtaaacaaatataagagcatttagatcactaaagtagtgatttaaacgctcttata 71
|||||||||| ||||||| ||||||||||||||| |||||||||| |||| |||||||||
Sbjct: 10 ctctgtaaactaatataaaagcatttagatcact-aagtagtgatctaaatgctcttata 68
Query: 72 tt 73
||
Sbjct: 69 tt 70
Score = 60.0 bits (30), Expect = 5e-09
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 5 ctactctctctgtaaacaaatataagagcatttagatcacta 46
|||||| ||| |||||| ||||||||||||||||||||||||
Sbjct: 88 ctactccctccgtaaactaatataagagcatttagatcacta 47
>RF00906;MIR1122;AB178167.1/826-734 4565:Triticum aestivum (bread
wheat)
Length = 93
Score = 73.8 bits (37), Expect = 4e-13
Identities = 61/69 (88%)
Strand = Plus / Minus
Query: 5 ctactctctctgtaaacaaatataagagcatttagatcactaaagtagtgatttaaacgc 64
|||||| ||| |||||| |||||||||||||||| |||| |||| ||||||| ||||| |
Sbjct: 90 ctactccctcggtaaactaatataagagcatttaaatcattaaaatagtgatctaaacac 31
Query: 65 tcttatatt 73
|||||||||
Sbjct: 30 tcttatatt 22
Score = 58.0 bits (29), Expect = 2e-08
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 5 ctactctctctgtaaacaaatataagagcatttagatcactaaagtagtgatttaaacgc 64
|||||| ||| |||||| |||||||||| |||||||||||| || ||||||||| ||
Sbjct: 4 ctactccctccgtaaactaatataagagtgtttagatcactattttaatgatttaaatgc 63
Query: 65 tcttatatt 73
|||||||||
Sbjct: 64 tcttatatt 72
>RF00906;MIR1122;AM000057.1/1342-1250 4513:Hordeum vulgare
Length = 93
Score = 73.8 bits (37), Expect = 4e-13
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 5 ctactctctctgtaaacaaatataagagcatttagatcactaaagtagtgatttaaacgc 64
|||||| |||||||||| ||||||||||| ||||||| |||||||||||| | |||| ||
Sbjct: 4 ctactccctctgtaaactaatataagagcgtttagattactaaagtagtgttctaaatgc 63
Query: 65 tcttatatt 73
| |||||||
Sbjct: 64 ttttatatt 72
Score = 56.0 bits (28), Expect = 8e-08
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 14 ctgtaaacaaatataagagcatttagatcactaaagtagtgatttaaacgctcttatatt 73
|||||||| ||||||| |||||||||| ||||| |||| || ||||||||||||||||
Sbjct: 81 ctgtaaactaatataaaagcatttagaacactactttagtaatctaaacgctcttatatt 22
>RF00906;MIR1122;EU183492.1/3479-3389 37682:Aegilops tauschii
Length = 91
Score = 73.8 bits (37), Expect = 4e-13
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 35 tttagatcactaaagtagtgatttaaacgctcttatatttcttta 79
|||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 32 tttagatcactaaagtagtgatctaaacactcttatatttcttta 76
Score = 50.1 bits (25), Expect = 5e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 6 tactctctctgtaaacaaatataagagcatttagatcacta 46
||||| ||||||||| ||||||||||| ||||||||||||
Sbjct: 87 tactccctctgtaaagaaatataagagtgtttagatcacta 47
>RF00906;MIR1122;AJ302096.1/1385-1477 4573:Aegilops speltoides
Length = 93
Score = 73.8 bits (37), Expect = 4e-13
Identities = 61/69 (88%)
Strand = Plus / Minus
Query: 5 ctactctctctgtaaacaaatataagagcatttagatcactaaagtagtgatttaaacgc 64
|||||| ||| |||||| ||||||||||| |||||| |||||| ||||||| |||||||
Sbjct: 90 ctactccctccgtaaactaatataagagcgtttagaatactaaaatagtgatctaaacgc 31
Query: 65 tcttatatt 73
|||||||||
Sbjct: 30 tcttatatt 22
Score = 63.9 bits (32), Expect = 3e-10
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 6 tactctctctgtaaacaaatataagagcatttagatcactaaagtagtgatttaaacgct 65
||||| |||||||||| ||||||||||| |||||||||||| |||| | ||||||||
Sbjct: 5 tactccctctgtaaactaatataagagcgtttagatcactattttagtattctaaacgct 64
Query: 66 cttatatt 73
||||||||
Sbjct: 65 cttatatt 72
>RF00906;MIR1122;EU626553.1/72905-73004 4572:Triticum urartu
Length = 100
Score = 71.9 bits (36), Expect = 1e-12
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 12 ctctgtaaacaaatataagagcatttagatcactaaagtagtga 55
|||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 11 ctctgtaaactaatataagagcatttagatcactaaaatagtga 54
>RF00906;MIR1122;EU660896.1/71755-71663 4572:Triticum urartu
Length = 93
Score = 71.9 bits (36), Expect = 1e-12
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 6 tactctctctgtaaacaaatataagagcatttagatcactaaagtagtgatttaaacgct 65
||||| |||| ||||| |||||||||| |||||||||||||| ||||| | ||||||||
Sbjct: 5 tactccctctataaaccaatataagagtgtttagatcactaaaatagtgttctaaacgct 64
Query: 66 cttatatt 73
||||||||
Sbjct: 65 cttatatt 72
Score = 58.0 bits (29), Expect = 2e-08
Identities = 59/69 (85%)
Strand = Plus / Minus
Query: 5 ctactctctctgtaaacaaatataagagcatttagatcactaaagtagtgatttaaacgc 64
|||||| ||| |||||| ||||||||||| |||||| ||||| ||||||| ||||| |
Sbjct: 90 ctactccctccgtaaactaatataagagcgtttagaacactattttagtgatctaaacac 31
Query: 65 tcttatatt 73
|||||||||
Sbjct: 30 tcttatatt 22
>RF00906;MIR1122;EF067844.1/459123-459031 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 93
Score = 71.9 bits (36), Expect = 1e-12
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 6 tactctctctgtaaacaaatataagagcatttagatcactaaagtagtgatttaaacgct 65
||||| |||||||||| |||||||||| |||||||| |||||| ||||| | |||| |||
Sbjct: 5 tactccctctgtaaactaatataagagtatttagattactaaaatagtgttctaaatgct 64
Query: 66 cttatatt 73
||||||||
Sbjct: 65 cttatatt 72
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 16 gtaaacaaatataagagcatttagatcacta 46
|||||| |||||||||||||||||| |||||
Sbjct: 79 gtaaactaatataagagcatttagaacacta 49
>RF00906;MIR1122;AY368673.1/832-740 4571:Triticum turgidum
Length = 93
Score = 69.9 bits (35), Expect = 6e-12
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 7 actctctctgtaaacaaatataagagcatttagatcactaaagtagtgatttaaacgctc 66
|||| ||| |||||| ||||||||||| |||||||||||||| ||||||| |||| |||
Sbjct: 88 actccctcagtaaactaatataagagcgtttagatcactaaaatagtgatcaaaacactc 29
Query: 67 ttatatt 73
|||||||
Sbjct: 28 ttatatt 22
Score = 48.1 bits (24), Expect = 2e-05
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 6 tactctctctgtaaacaaatataagagcatttagatcactaaagtagtgatttaaacgct 65
||||| ||| ||||| |||||||||| ||| |||||||| ||||||| ||||||||
Sbjct: 5 tactccctccgtaaattaatataagagtgttttgatcactattttagtgatctaaacgct 64
Query: 66 cttatatt 73
||||||||
Sbjct: 65 cttatatt 72
>RF00906;MIR1122;AF277253.1/801-887 58935:Australopyrum velutinum
Length = 87
Score = 69.9 bits (35), Expect = 6e-12
Identities = 64/74 (86%), Gaps = 6/74 (8%)
Strand = Plus / Plus
Query: 6 tactctctctgtaaacaaatataagagcatttagatcactaaagtagtgatttaaacgct 65
||||| ||||||||| |||||||||||| ||||||||| ||||||| ||||||||
Sbjct: 5 tactccctctgtaaagaaatataagagcgtttagatca------tagtgatctaaacgct 58
Query: 66 cttatatttcttta 79
||||||||||||||
Sbjct: 59 cttatatttcttta 72
Score = 69.9 bits (35), Expect = 6e-12
Identities = 64/74 (86%), Gaps = 6/74 (8%)
Strand = Plus / Minus
Query: 6 tactctctctgtaaacaaatataagagcatttagatcactaaagtagtgatttaaacgct 65
||||| ||||||||| |||||||||||| |||||||||||| |||| ||||||||
Sbjct: 83 tactccctctgtaaagaaatataagagcgtttagatcacta------tgatctaaacgct 30
Query: 66 cttatatttcttta 79
||||||||||||||
Sbjct: 29 cttatatttcttta 16
>RF00906;MIR1122;EU282300.1/610-519 97361:Hordeum murinum
Length = 92
Score = 65.9 bits (33), Expect = 9e-11
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 6 tactctctctgtaaacaaatataagagcatttagatcacta 46
||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 88 tactccctctgtaaactaatataagagcatttagatcacta 48
Score = 50.1 bits (25), Expect = 5e-06
Identities = 50/57 (87%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 17 taaacaaatataagagcatttagatcactaaagtagtgatttaaacgctcttatatt 73
||||| ||||||| ||| ||||||||| ||| |||||||| |||| |||||||||||
Sbjct: 16 taaactaatataaaagcgtttagatcattaa-gtagtgatctaaatgctcttatatt 71
>RF00906;MIR1122;AK251798.1/892-984 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 93
Score = 63.9 bits (32), Expect = 3e-10
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 6 tactctctctgtaaacaaatataagagcatttagatcactaaagtagtgatttaaacgct 65
||||| ||| |||||| ||||||||| ||||||||| ||| |||||||| | |||| |||
Sbjct: 5 tactccctccgtaaactaatataagaacatttagattactgaagtagtgttctaaatgct 64
Query: 66 cttatatt 73
||||||||
Sbjct: 65 cttatatt 72
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 17 taaacaaatataagagcatttagatcacta 46
||||| |||||||||||||||||| |||||
Sbjct: 78 taaactaatataagagcatttagaacacta 49
>RF00906;MIR1122;X65606.1/2347-2255 4513:Hordeum vulgare
Length = 93
Score = 63.9 bits (32), Expect = 3e-10
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 6 tactctctctgtaaacaaatataagagcatttagatcactaaagtagtgatttaaacgct 65
||||| ||||||||| |||||||||| ||||||||| |||| ||||||| ||||| |
Sbjct: 89 tactccctctgtaaagaaatataagatcatttagataactactttagtgatctaaacatt 30
Query: 66 cttatatttctttaaggagg 85
||||||||||| || |||||
Sbjct: 29 cttatatttctgtacggagg 10
Score = 60.0 bits (30), Expect = 5e-09
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 22 aaatataagagcatttagatcactaaagtagtgatttaaacgctcttatatttcttta 79
|||||||||| ||||||||||||||||||| || |||| | |||||||||||||||
Sbjct: 21 aaatataagaatgtttagatcactaaagtagttatctaaatgatcttatatttcttta 78
>RF00906;MIR1122;EU835198.1/64297-64202 85692:Triticum turgidum
subsp. dicoccoides
Length = 96
Score = 58.0 bits (29), Expect = 2e-08
Identities = 58/67 (86%), Gaps = 3/67 (4%)
Strand = Plus / Minus
Query: 16 gtaaacaaatataagagcatttagatcactaaa---gtagtgatttaaacgctcttatat 72
||||| ||||| |||||| | |||||||||||| |||||||| |||||| ||||||||
Sbjct: 82 gtaaagaaatacaagagcgtctagatcactaaaatagtagtgatctaaacgttcttatat 23
Query: 73 ttcttta 79
|||||||
Sbjct: 22 ttcttta 16
>RF00906;MIR1122;AF458277.1/188-282 85692:Triticum turgidum subsp.
dicoccoides
Length = 95
Score = 58.0 bits (29), Expect = 2e-08
Identities = 56/64 (87%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 12 ctctgtaaacaaatataagagcatttagatcactaa--agtagtgatttaaacgctctta 69
|||||||||| ||||||||| | ||||||||||||| ||||||||| |||| | |||||
Sbjct: 11 ctctgtaaactaatataagaccttttagatcactaagtagtagtgatctaaaaggtctta 70
Query: 70 tatt 73
||||
Sbjct: 71 tatt 74
Score = 50.1 bits (25), Expect = 5e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 6 tactctctctgtaaacaaatataagagcatttagatcacta 46
||||| |||||||||| ||||||||| | ||||||||||||
Sbjct: 91 tactccctctgtaaactaatataagaccttttagatcacta 51
>RF00906;MIR1122;AY853252.1/53493-53585 4513:Hordeum vulgare
Length = 93
Score = 58.0 bits (29), Expect = 2e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 6 tactctctctgtaaacaaatataagagcatttagatcacta 46
||||| |||||||||| ||||||| ||||||||||||||||
Sbjct: 5 tactccctctgtaaactaatataaaagcatttagatcacta 45
Score = 58.0 bits (29), Expect = 2e-08
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 17 taaacaaatataagagcatttagatcactaaagtagtgatttaaacgctcttatatt 73
||||| ||||||||||||||||||| | |||| ||||||| |||| ||| |||||||
Sbjct: 78 taaactaatataagagcatttagattattaaaatagtgatctaaatgcttttatatt 22
>RF00906;MIR1122;DQ537336.1/26726-26824 4565:Triticum aestivum
(bread wheat)
Length = 99
Score = 56.0 bits (28), Expect = 8e-08
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 6 tactctctctgtaaacaaatataagagcatttagatcactaaagtagt 53
||||| ||||||||| |||||||||| | |||||||||||||| ||||
Sbjct: 5 tactccctctgtaaagaaatataagatcgtttagatcactaaaatagt 52
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 50 tagtgatttaaacgctcttatatttcttta 79
||||||| |||||| |||||||||||||||
Sbjct: 45 tagtgatctaaacgatcttatatttcttta 16
>RF00906;MIR1122;AY485644.1/177748-177656 4568:Triticum monococcum
Length = 93
Score = 54.0 bits (27), Expect = 3e-07
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 15 tgtaaacaaatataagagcatttagatcactaaagtagtgatttaaacgctcttatatt 73
||||||| ||||||||||| || |||||| |||| | ||||| ||||| ||||||||||
Sbjct: 14 tgtaaactaatataagagcgttgagatcattaaaattgtgatctaaactctcttatatt 72
>RF00906;MIR1122;AK248998.1/1925-1844 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 82
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 12 ctctgtaaacaaatataagagcatttagatcacta 46
||||||||| |||||||||| ||||||||||||||
Sbjct: 72 ctctgtaaagaaatataagatcatttagatcacta 38
>RF00906;MIR1122;AF488415.1/103662-103754 4568:Triticum monococcum
Length = 93
Score = 52.0 bits (26), Expect = 1e-06
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 16 gtaaacaaatataagagcatttagatcactaaagtagtgatttaaacgctcttatatt 73
|||||| ||||||||||| |||||| ||||||||| |||| |||| ||| |||||||
Sbjct: 15 gtaaactaatataagagcgtttagaatactaaagtaatgatctaaatgcttttatatt 72
Score = 48.1 bits (24), Expect = 2e-05
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 6 tactctctctgtaaacaaatataagagcatttagatcactaaagtagtgatttaaacgct 65
||||| || ||||||| ||||||| ||||||||||||| || |||| | ||||||||
Sbjct: 89 tactccctttgtaaactaatataaaagcatttagatcattactttagtattctaaacgct 30
Query: 66 cttatatt 73
||||||||
Sbjct: 29 cttatatt 22
>RF00906;MIR1122;CR626934.1/48037-47942 4565:Triticum aestivum
(bread wheat)
Length = 96
Score = 52.0 bits (26), Expect = 1e-06
Identities = 61/72 (84%), Gaps = 3/72 (4%)
Strand = Plus / Minus
Query: 6 tactctctctgtaaacaaatataagagcatttagatcacta---aagtagtgatttaaac 62
||||| || |||||| ||||||||||| |||||||||||| ||||||||| |||||
Sbjct: 92 tactccctatgtaaaataatataagagcgtttagatcactagagtagtagtgatctaaac 33
Query: 63 gctcttatattt 74
||||| ||||||
Sbjct: 32 gctctcatattt 21
>RF00906;MIR1122;AB298185.1/20826-20734 4565:Triticum aestivum
(bread wheat)
Length = 93
Score = 50.1 bits (25), Expect = 5e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 6 tactctctctgtaaacaaatataagagcatttagatcacta 46
||||| |||||||||| ||||||||| | ||||||||||||
Sbjct: 89 tactccctctgtaaactaatataagaacgtttagatcacta 49
>RF00906;MIR1122;EU835198.1/56667-56575 85692:Triticum turgidum
subsp. dicoccoides
Length = 93
Score = 50.1 bits (25), Expect = 5e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 6 tactctctctgtaaacaaatataagagcatttagatcacta 46
||||| |||||||||| |||||||||| ||||||||||||
Sbjct: 5 tactccctctgtaaactaatataagagtgtttagatcacta 45
>RF00906;MIR1122;FJ436986.1/53497-53587 37682:Aegilops tauschii
Length = 91
Score = 50.1 bits (25), Expect = 5e-06
Identities = 58/68 (85%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 6 tactctctctgtaaacaaatataagagcatttagatcactaaagtagtgatttaaacgct 65
||||| |||||||||| ||||||| || ||||||| |||||| |||| | ||||||||
Sbjct: 5 tactccctctgtaaactaatataaaagtgtttagataactaaaatagt--tctaaacgct 62
Query: 66 cttatatt 73
||||||||
Sbjct: 63 cttatatt 70