miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AF427791.1/1754-1590 4513:Hordeum vulgare
          Length = 165

 Score =  133 bits (67), Expect = 1e-30
 Identities = 136/158 (86%), Gaps = 1/158 (0%)
 Strand = Plus / Minus

                                                                       
Query: 98  tactccctctgttcctaaatataagtcctttaaag-attccaccagggnactacatacgg 156
           ||||||||| ||||| ||||||||| ||||| | | ||| ||| |||  |||||||||||
Sbjct: 163 tactccctccgttccaaaatataagaccttttaggtatttcactaggagactacatacgg 104

                                                                       
Query: 157 agcaaaatgagtcaatctacactctaaagtatatctttgtacatccgtatgtagtttgta 216
           |||||||||||| |||||| |||||||| ||| ||| |||||||||||||||||||| ||
Sbjct: 103 agcaaaatgagtgaatctatactctaaaatatgtctatgtacatccgtatgtagtttata 44

                                                 
Query: 217 gtgtaatgtctaaaaagacatatatttaggaacggagg 254
           ||  ||| ||||||| | | ||||||||||||||||||
Sbjct: 43  gtacaatctctaaaaggtcttatatttaggaacggagg 6



 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 98  tactccctctgttcctaaatataagtccttt 128
           ||||||||| ||||||||||||||| |||||
Sbjct: 1   tactccctccgttcctaaatataagaccttt 31



 Score = 44.1 bits (22), Expect = 0.001
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 1  ccctccgttcctaaatataagtctttttag 30
          ||||||||||||||||||||| | ||||||
Sbjct: 5  ccctccgttcctaaatataagaccttttag 34




>RF00906;MIR1122;DQ352178.1/5805-5640 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 166

 Score =  117 bits (59), Expect = 8e-26
 Identities = 134/158 (84%), Gaps = 1/158 (0%)
 Strand = Plus / Minus

                                                                       
Query: 98  tactccctctgttcctaaatataagtcctttaaag-attccaccagggnactacatacgg 156
           ||||||||| ||||| ||||||||| ||||| | | ||| ||| ||   |||||||||||
Sbjct: 166 tactccctccgttccaaaatataagaccttttaggtatttcactagaagactacatacgg 107

                                                                       
Query: 157 agcaaaatgagtcaatctacactctaaagtatatctttgtacatccgtatgtagtttgta 216
           |||||||||||  |||||| |||||||| ||| ||| |||||||||||||||||||| ||
Sbjct: 106 agcaaaatgagcgaatctatactctaaaatatgtctatgtacatccgtatgtagtttata 47

                                                 
Query: 217 gtgtaatgtctaaaaagacatatatttaggaacggagg 254
           ||  ||| ||||||| | | ||||||||||||||||||
Sbjct: 46  gtacaatctctaaaaggtcttatatttaggaacggagg 9



 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 98  tactccctctgttcctaaatataagtccttt 128
           ||||||||| ||||||||||||||| |||||
Sbjct: 4   tactccctccgttcctaaatataagaccttt 34



 Score = 44.1 bits (22), Expect = 0.001
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 1  ccctccgttcctaaatataagtctttttag 30
          ||||||||||||||||||||| | ||||||
Sbjct: 8  ccctccgttcctaaatataagaccttttag 37




>RF00906;MIR1122;AY821693.1/1381-1215 58935:Australopyrum velutinum
          Length = 167

 Score =  117 bits (59), Expect = 8e-26
 Identities = 136/159 (85%), Gaps = 2/159 (1%)
 Strand = Plus / Plus

                                                                       
Query: 97  gtactccctctgttcctaaatataagtcctttaa-agattccaccagggnactacatacg 155
           |||||||||||||||||||||||||||| ||| | |||||| |  | || ||||||||||
Sbjct: 4   gtactccctctgttcctaaatataagtctttttagagattctaatatgg-actacatacg 62

                                                                       
Query: 156 gagcaaaatgagtcaatctacactctaaagtatatctttgtacatccgtatgtagtttgt 215
           ||||||||||||| ||||||||||||||| ||  ||| | | ||||||||||||||   |
Sbjct: 63  gagcaaaatgagtgaatctacactctaaaatacgtctatattcatccgtatgtagtccat 122

                                                  
Query: 216 agtgtaatgtctaaaaagacatatatttaggaacggagg 254
           | |  ||| ||||||||||| ||||||||||||||||||
Sbjct: 123 attcaaatctctaaaaagacttatatttaggaacggagg 161



 Score = 60.0 bits (30), Expect = 2e-08
 Identities = 30/30 (100%)
 Strand = Plus / Minus

                                         
Query: 1   ccctccgttcctaaatataagtctttttag 30
           ||||||||||||||||||||||||||||||
Sbjct: 162 ccctccgttcctaaatataagtctttttag 133



 Score = 58.0 bits (29), Expect = 6e-08
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                            
Query: 51  atatagacatactttacagtgtagattcattcattttgcttcgtatgta 99
           |||||||| || |||| |||||||||||| |||||||||| ||||||||
Sbjct: 103 atatagacgtattttagagtgtagattcactcattttgctccgtatgta 55



 Score = 52.0 bits (26), Expect = 4e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 1  ccctccgttcctaaatataagtctttttag 30
          ||||| ||||||||||||||||||||||||
Sbjct: 9  ccctctgttcctaaatataagtctttttag 38



 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 98  tactccctctgttcctaaatataagtc 124
           ||||||||| |||||||||||||||||
Sbjct: 166 tactccctccgttcctaaatataagtc 140



 Score = 44.1 bits (22), Expect = 0.001
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 225 tctaaaaagacatatatttaggaacggagg 254
           ||||||||||| ||||||||||||| ||||
Sbjct: 39  tctaaaaagacttatatttaggaacagagg 10




>RF00906;MIR1122;EU545231.1/2974-3138 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 165

 Score =  111 bits (56), Expect = 5e-24
 Identities = 135/159 (84%), Gaps = 2/159 (1%)
 Strand = Plus / Plus

                                                                       
Query: 98  tactccctctgttcctaaatataagtcctttaaa-gattccaccagggnactacatacgg 156
           ||||||||| ||||||||||||||||| |||||  |||| ||| ||    ||||||||||
Sbjct: 1   tactccctccgttcctaaatataagtcttttaagcgatttcactagatgtctacatacgg 60

                                                                       
Query: 157 agcaaaatgagtcaatctacactctaaagtatatctttgtacatccgtatgtagt-ttgt 215
           |||||||||| | ||| ||||||||||||||| ||| | ||||||||||||||||    |
Sbjct: 61  agcaaaatgattgaatgtacactctaaagtatgtctatatacatccgtatgtagtccatt 120

                                                  
Query: 216 agtgtaatgtctaaaaagacatatatttaggaacggagg 254
           |||| ||| |||| |||||| ||||||||||||||||||
Sbjct: 121 agtgaaatctctacaaagacttatatttaggaacggagg 159



 Score = 67.9 bits (34), Expect = 7e-11
 Identities = 46/50 (92%)
 Strand = Plus / Minus

                                                             
Query: 50  tatatagacatactttacagtgtagattcattcattttgcttcgtatgta 99
           ||||||||||||||||| |||||| ||||| |||||||||| ||||||||
Sbjct: 101 tatatagacatactttagagtgtacattcaatcattttgctccgtatgta 52



 Score = 54.0 bits (27), Expect = 1e-06
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 1  ccctccgttcctaaatataagtctttt 27
          |||||||||||||||||||||||||||
Sbjct: 5  ccctccgttcctaaatataagtctttt 31



 Score = 52.0 bits (26), Expect = 4e-06
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 1   ccctccgttcctaaatataagtcttt 26
           ||||||||||||||||||||||||||
Sbjct: 160 ccctccgttcctaaatataagtcttt 135



 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 98  tactccctctgttcctaaatataagtc 124
           ||||||||| |||||||||||||||||
Sbjct: 164 tactccctccgttcctaaatataagtc 138



 Score = 44.1 bits (22), Expect = 0.001
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 229 aaaagacatatatttaggaacggagg 254
           ||||||| ||||||||||||||||||
Sbjct: 31  aaaagacttatatttaggaacggagg 6




>RF00906;MIR1122;AF521177.1/76812-76977 4513:Hordeum vulgare
          Length = 166

 Score =  103 bits (52), Expect = 1e-21
 Identities = 134/159 (84%), Gaps = 2/159 (1%)
 Strand = Plus / Minus

                                                                       
Query: 98  tactccctctgttcctaaatataagtcctttaa-agattccaccagggnactacatacgg 156
           ||||||||| ||||||||||||||||| ||| | ||||| | | ||   |||||||||||
Sbjct: 164 tactccctccgttcctaaatataagtctttttagagatttcgctagacgactacatacgg 105

                                                                       
Query: 157 agcaaaatgagtcaatctacactctaaagtatatctttgtacatccgtatgtagt-ttgt 215
           |||||||||||| |||||| | |||||| ||| ||| | |||||||| ||||||| |  |
Sbjct: 104 agcaaaatgagtgaatctatattctaaaatatgtctatatacatccgaatgtagtctact 45

                                                  
Query: 216 agtgtaatgtctaaaaagacatatatttaggaacggagg 254
           |||| ||  ||||||||||| ||||||||||||||||||
Sbjct: 44  agtgaaacctctaaaaagacttatatttaggaacggagg 6



 Score = 61.9 bits (31), Expect = 4e-09
 Identities = 41/43 (95%), Gaps = 1/43 (2%)
 Strand = Plus / Plus

                                                     
Query: 1  ccctccgttcctaaatataagtctttttaggaggttccactag 43
          ||||||||||||||||||||||||||||| |||||| ||||||
Sbjct: 5  ccctccgttcctaaatataagtcttttta-gaggtttcactag 46



 Score = 60.0 bits (30), Expect = 2e-08
 Identities = 30/30 (100%)
 Strand = Plus / Minus

                                         
Query: 1   ccctccgttcctaaatataagtctttttag 30
           ||||||||||||||||||||||||||||||
Sbjct: 160 ccctccgttcctaaatataagtctttttag 131



 Score = 52.0 bits (26), Expect = 4e-06
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                             
Query: 50  tatatagacatactttacagtgtagattcattcattttgcttcgtatgta 99
           |||||||||||| |||| | | |||||||| |||||||||| ||||||||
Sbjct: 64  tatatagacatattttagaatatagattcactcattttgctccgtatgta 113



 Score = 52.0 bits (26), Expect = 4e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 225 tctaaaaagacatatatttaggaacggagg 254
           ||||||||||| ||||||||||||||||||
Sbjct: 130 tctaaaaagacttatatttaggaacggagg 159



 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 98  tactccctctgttcctaaatataagtc 124
           ||||||||| |||||||||||||||||
Sbjct: 1   tactccctccgttcctaaatataagtc 27




>RF00906;MIR1122;AF338431.1/8563-8727 37682:Aegilops tauschii
          Length = 165

 Score = 87.7 bits (44), Expect = 7e-17
 Identities = 82/92 (89%), Gaps = 2/92 (2%)
 Strand = Plus / Minus

                                                                       
Query: 94  tatgtactccctctgttcctaaatataagtc-ctttaaagattccaccagggnactacat 152
           ||||||||||||| ||||||||||||||||| || || ||||| ||| | || |||||||
Sbjct: 165 tatgtactccctccgttcctaaatataagtctctgtagagatttcactatgg-actacat 107

                                           
Query: 153 acggagcaaaatgagtcaatctacactctaaa 184
           ||| |||||||||||| |||||||||||||||
Sbjct: 106 acgaagcaaaatgagtgaatctacactctaaa 75



 Score = 58.0 bits (29), Expect = 6e-08
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                
Query: 63  tttacagtgtagattcattcattttgcttcgtatgta 99
           |||| |||||||||||| |||||||||||||||||||
Sbjct: 75  tttagagtgtagattcactcattttgcttcgtatgta 111



 Score = 48.1 bits (24), Expect = 6e-05
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 1   ccctccgttcctaaatataagtct 24
           ||||||||||||||||||||||||
Sbjct: 157 ccctccgttcctaaatataagtct 134



 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 98  tactccctctgttcctaaatataagtc 124
           ||||||||| |||||||||||||||||
Sbjct: 5   tactccctccgttcctaaatataagtc 31




>RF00906;MIR1122;FJ548567.1/3141-3305 4513:Hordeum vulgare
          Length = 165

 Score = 79.8 bits (40), Expect = 2e-14
 Identities = 132/159 (83%), Gaps = 3/159 (1%)
 Strand = Plus / Plus

                                                                       
Query: 98  tactccctctgttcctaaatataagtcctttaa-agattccaccagggnactacatacgg 156
           ||||||||| |||||||||| |||||| ||| | ||||| | | | ||  ||||||| ||
Sbjct: 3   tactccctccgttcctaaatgtaagtctttttagagatttctctaaggggctacatatgg 62

                                                                       
Query: 157 agcaaaatgagtcaatctacactctaaagtatatctttgtacatccgtatgtagt-ttgt 215
           |||||||||||| |||||  ||||| |||||| ||| | ||||||||||||||||    |
Sbjct: 63  agcaaaatgagtgaatctgtactct-aagtatgtctatatacatccgtatgtagtcccct 121

                                                  
Query: 216 agtgtaatgtctaaaaagacatatatttaggaacggagg 254
           |||| ||  ||||||||||| ||||||||||||||||||
Sbjct: 122 agtgaaacttctaaaaagacttatatttaggaacggagg 160



 Score = 60.0 bits (30), Expect = 2e-08
 Identities = 30/30 (100%)
 Strand = Plus / Minus

                                         
Query: 1   ccctccgttcctaaatataagtctttttag 30
           ||||||||||||||||||||||||||||||
Sbjct: 161 ccctccgttcctaaatataagtctttttag 132



 Score = 52.0 bits (26), Expect = 4e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 1  ccctccgttcctaaatataagtctttttag 30
          |||||||||||||||| |||||||||||||
Sbjct: 7  ccctccgttcctaaatgtaagtctttttag 36



 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 98  tactccctctgttcctaaatataagtc 124
           ||||||||| |||||||||||||||||
Sbjct: 165 tactccctccgttcctaaatataagtc 139



 Score = 44.1 bits (22), Expect = 0.001
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 225 tctaaaaagacatatatttaggaacggagg 254
           ||||||||||| || |||||||||||||||
Sbjct: 37  tctaaaaagacttacatttaggaacggagg 8




>RF00906;MIR1122;AY853252.1/232318-232152 4513:Hordeum vulgare
          Length = 167

 Score = 75.8 bits (38), Expect = 3e-13
 Identities = 130/158 (82%), Gaps = 2/158 (1%)
 Strand = Plus / Plus

                                                                       
Query: 98  tactccctctgttcctaaatataagtcctttaa-agattccaccagggnactacatacgg 156
           ||||||||| ||||||||||||||| ||||| | | |||| || | || |||||||||||
Sbjct: 5   tactccctccgttcctaaatataagaccttttagaaattctactatgg-actacatacgg 63

                                                                       
Query: 157 agcaaaatgagtcaatctacactctaaagtatatctttgtacatccgtatgtagtttgta 216
           | |||||  | | || ||| || ||||| ||| ||| | |||||||||||||||||  ||
Sbjct: 64  aacaaaacaaataaacctataccctaaaatatgtctatatacatccgtatgtagttcata 123

                                                 
Query: 217 gtgtaatgtctaaaaagacatatatttaggaacggagg 254
           |||||||  |||||| | | ||||||||||||||||||
Sbjct: 124 gtgtaatacctaaaaggtcttatatttaggaacggagg 161



 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 1   ccctccgttcctaaatataagtctttttagg 31
           ||||||||||||||||||||| | |||||||
Sbjct: 162 ccctccgttcctaaatataagaccttttagg 132



 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 98  tactccctctgttcctaaatataagtccttt 128
           ||||||||| ||||||||||||||| |||||
Sbjct: 166 tactccctccgttcctaaatataagaccttt 136



 Score = 44.1 bits (22), Expect = 0.001
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 1  ccctccgttcctaaatataagtctttttag 30
          ||||||||||||||||||||| | ||||||
Sbjct: 9  ccctccgttcctaaatataagaccttttag 38




>RF00906;MIR1122;AY013246.1/66605-66771 112509:Hordeum vulgare
           subsp. vulgare (domesticated barley)
          Length = 167

 Score = 75.8 bits (38), Expect = 3e-13
 Identities = 130/158 (82%), Gaps = 2/158 (1%)
 Strand = Plus / Minus

                                                                       
Query: 98  tactccctctgttcctaaatataagtcctttaa-agattccaccagggnactacatacgg 156
           ||||||||| ||||||||||||||| ||||| | | ||| ||| |  | |||||||||||
Sbjct: 163 tactccctccgttcctaaatataagaccttttacaaatttcactatag-actacatacgg 105

                                                                       
Query: 157 agcaaaatgagtcaatctacactctaaagtatatctttgtacatccgtatgtagtttgta 216
           |||||||||||| ||| ||||  | ||| |||  ||   |||||||||||||||||| ||
Sbjct: 104 agcaaaatgagtgaatttacatcccaaaatatgactacatacatccgtatgtagtttata 45

                                                 
Query: 217 gtgtaatgtctaaaaagacatatatttaggaacggagg 254
           |||  || ||||||| | | ||||||||||||||||||
Sbjct: 44  gtgagatctctaaaaggtcttatatttaggaacggagg 7



 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 98  tactccctctgttcctaaatataagtccttt 128
           ||||||||| ||||||||||||||| |||||
Sbjct: 2   tactccctccgttcctaaatataagaccttt 32



 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 47/55 (85%)
 Strand = Plus / Plus

                                                                  
Query: 200 tccgtatgtagtttgtagtgtaatgtctaaaaagacatatatttaggaacggagg 254
           |||||||||||| | ||||| ||| | ||||| | | ||||||||||||||||||
Sbjct: 104 tccgtatgtagtctatagtgaaatttgtaaaaggtcttatatttaggaacggagg 158



 Score = 44.1 bits (22), Expect = 0.001
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 1  ccctccgttcctaaatataagtctttttag 30
          ||||||||||||||||||||| | ||||||
Sbjct: 6  ccctccgttcctaaatataagaccttttag 35




>RF00906;MIR1122;AK252971.1/1469-1351 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 119

 Score = 69.9 bits (35), Expect = 2e-11
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                  
Query: 200 tccgtatgtagtttgtagtgtaatgtctaaaaagacatatatttaggaacggagg 254
           ||||||||||||   ||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 64  tccgtatgtagtccatagtgtaatctctaaaaagacttatatttaggaacggagg 10



 Score = 67.9 bits (34), Expect = 7e-11
 Identities = 69/78 (88%), Gaps = 2/78 (2%)
 Strand = Plus / Plus

                                                                       
Query: 98  tactccctctgttcctaaatataagtcctttaa-agattccaccagggnactacatacgg 156
           ||||||||| ||||||||||||||||| ||| | ||||| ||| | || |||||||||||
Sbjct: 5   tactccctccgttcctaaatataagtctttttagagattacactatgg-actacatacgg 63

                             
Query: 157 agcaaaatgagtcaatct 174
           |||||||||||| |||||
Sbjct: 64  agcaaaatgagtgaatct 81



 Score = 60.0 bits (30), Expect = 2e-08
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 1  ccctccgttcctaaatataagtctttttag 30
          ||||||||||||||||||||||||||||||
Sbjct: 9  ccctccgttcctaaatataagtctttttag 38



 Score = 52.0 bits (26), Expect = 4e-06
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                         
Query: 1   ccctccgttcctaaatataagtctttttag 30
           ||||||||||||||||||||||| ||||||
Sbjct: 111 ccctccgttcctaaatataagtccttttag 82



 Score = 52.0 bits (26), Expect = 4e-06
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                             
Query: 95  atgtactccctctgttcctaaatataagtccttt 128
           |||||| ||||| |||||||||||||||||||||
Sbjct: 118 atgtaccccctccgttcctaaatataagtccttt 85



 Score = 44.1 bits (22), Expect = 0.001
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 225 tctaaaaagacatatatttaggaacggagg 254
           ||||||| ||| ||||||||||||||||||
Sbjct: 81  tctaaaaggacttatatttaggaacggagg 110




>RF00906;MIR1122;AJ400714.1/2947-2781 4565:Triticum aestivum (bread
           wheat)
          Length = 167

 Score = 60.0 bits (30), Expect = 2e-08
 Identities = 87/106 (82%)
 Strand = Plus / Plus

                                                                       
Query: 149 acatacggagcaaaatgagtcaatctacactctaaagtatatctttgtacatccgtatgt 208
           |||||||||| ||||||||| || ||| |||||||| |  ||||   |||||||||||||
Sbjct: 53  acatacggagtaaaatgagtgaacctatactctaaaatgcatctacatacatccgtatgt 112

                                                         
Query: 209 agtttgtagtgtaatgtctaaaaagacatatatttaggaacggagg 254
            ||   ||||| ||| |||| |||||| |||||||||||| |||||
Sbjct: 113 ggtccatagtgaaatctctacaaagacttatatttaggaatggagg 158



 Score = 52.0 bits (26), Expect = 4e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 1  ccctccgttcctaaatataagtcttt 26
          ||||||||||||||||||||||||||
Sbjct: 6  ccctccgttcctaaatataagtcttt 31



 Score = 44.1 bits (22), Expect = 0.001
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 1   ccctccgttcctaaatataagtcttt 26
           |||||| |||||||||||||||||||
Sbjct: 159 ccctccattcctaaatataagtcttt 134




>RF00906;MIR1122;EU812563.1/51726-51572 112509:Hordeum vulgare
           subsp. vulgare (domesticated barley)
          Length = 155

 Score = 58.0 bits (29), Expect = 6e-08
 Identities = 62/72 (86%), Gaps = 1/72 (1%)
 Strand = Plus / Minus

                                                                       
Query: 98  tactccctctgttcctaaatataagtcctttaa-agattccaccagggnactacatacgg 156
           ||||||||| ||||||||||||||||| ||||| | ||| ||| ||    ||||||||||
Sbjct: 151 tactccctccgttcctaaatataagtcttttaagatatttcactagtagtctacatacgg 92

                       
Query: 157 agcaaaatgagt 168
           ||||||||||||
Sbjct: 91  agcaaaatgagt 80



 Score = 54.0 bits (27), Expect = 1e-06
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                      
Query: 1   ccctccgttcctaaatataagtctttt 27
           |||||||||||||||||||||||||||
Sbjct: 147 ccctccgttcctaaatataagtctttt 121



 Score = 52.0 bits (26), Expect = 4e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 1  ccctccgttcctaaatataagtcttt 26
          ||||||||||||||||||||||||||
Sbjct: 9  ccctccgttcctaaatataagtcttt 34



 Score = 48.1 bits (24), Expect = 6e-05
 Identities = 34/36 (94%), Gaps = 1/36 (2%)
 Strand = Plus / Plus

                                               
Query: 98  tactccctctgttcctaaatataagtcctttaaaga 133
           ||||||||| |||||||||||||||| |||||||||
Sbjct: 5   tactccctccgttcctaaatataagt-ctttaaaga 39



 Score = 48.1 bits (24), Expect = 6e-05
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                   
Query: 215 tagtgtaatgtctaaaaagacatatatttaggaacggagg 254
           ||||| ||| ||| ||||||| ||||||||||||||||||
Sbjct: 107 tagtgaaatatcttaaaagacttatatttaggaacggagg 146




>RF00906;MIR1122;DQ871219.1/152084-152250 85692:Triticum turgidum
          subsp. dicoccoides
          Length = 167

 Score = 52.0 bits (26), Expect = 4e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 1  ccctccgttcctaaatataagtcttt 26
          ||||||||||||||||||||||||||
Sbjct: 9  ccctccgttcctaaatataagtcttt 34



 Score = 52.0 bits (26), Expect = 4e-06
 Identities = 87/106 (82%), Gaps = 1/106 (0%)
 Strand = Plus / Plus

                                                                       
Query: 149 acatacggagcaaaatgagtcaatctacactctaaagtatatctttgtacatccgtatgt 208
           |||||||||| ||||||||| |||||||||  |||| |  |||| | |||||||||||||
Sbjct: 56  acatacggagaaaaatgagtgaatctacaca-taaaatgcatctatatacatccgtatgt 114

                                                         
Query: 209 agtttgtagtgtaatgtctaaaaagacatatatttaggaacggagg 254
            ||    |||| ||| ||||  ||||| ||||||||||||||||||
Sbjct: 115 ggtccacagtgaaatatctacgaagacttatatttaggaacggagg 160



 Score = 50.1 bits (25), Expect = 2e-05
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 1   ccctccgttcctaaatataagtctt 25
           |||||||||||||||||||||||||
Sbjct: 161 ccctccgttcctaaatataagtctt 137



 Score = 48.1 bits (24), Expect = 6e-05
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 97  gtactccctctgttcctaaatataagtc 124
           |||||||||| |||||||||||||||||
Sbjct: 166 gtactccctccgttcctaaatataagtc 139



 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 47/55 (85%)
 Strand = Plus / Minus

                                                                  
Query: 200 tccgtatgtagtttgtagtgtaatgtctaaaaagacatatatttaggaacggagg 254
           ||||||||| || | ||||| ||| |||  |||||| ||||||||||||||||||
Sbjct: 64  tccgtatgtggtctatagtgaaatctctccaaagacttatatttaggaacggagg 10




>RF00906;MIR1122;AK248896.1/138-279 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 142

 Score = 52.0 bits (26), Expect = 4e-06
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 1   ccctccgttcctaaatataagtcttt 26
           ||||||||||||||||||||||||||
Sbjct: 134 ccctccgttcctaaatataagtcttt 109



 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 98  tactccctctgttcctaaatataagtc 124
           ||||||||| |||||||||||||||||
Sbjct: 138 tactccctccgttcctaaatataagtc 112




>RF00906;MIR1122;AP008214.1/20360044-20360123 39947:Oryza sativa
           Japonica Group
          Length = 80

 Score = 50.1 bits (25), Expect = 2e-05
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 98  tactccctctgttcctaaatataag 122
           |||||||||||||||||||||||||
Sbjct: 5   tactccctctgttcctaaatataag 29



 Score = 44.1 bits (22), Expect = 0.001
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 97  gtactccctctgttcctaaatataag 122
           |||||||||| |||||||||||||||
Sbjct: 77  gtactccctccgttcctaaatataag 52




>RF00906;MIR1122;AAAA02032049.1/7937-7781 39946:Oryza sativa Indica
           Group
          Length = 157

 Score = 48.1 bits (24), Expect = 6e-05
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 95  atgtactccctctgttcctaaatataag 122
           ||||||||||||||| ||||||||||||
Sbjct: 156 atgtactccctctgtccctaaatataag 129




>RF00906;MIR1122;AP008217.1/6469174-6469304 39947:Oryza sativa
           Japonica Group
          Length = 131

 Score = 48.1 bits (24), Expect = 6e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 98  tactccctctgttcctaaatataa 121
           ||||||||||||||||||||||||
Sbjct: 5   tactccctctgttcctaaatataa 28




>RF01058;MIR806;AAAA02029566.1/13003-12764 39946:Oryza sativa Indica
           Group
          Length = 240

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 97  gtactccctctgttcctaaatat 119
           |||||||||||||||||||||||
Sbjct: 240 gtactccctctgttcctaaatat 218




>RF01058;MIR806;AP008207.1/40026717-40026952 39947:Oryza sativa
           Japonica Group
          Length = 236

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 97  gtactccctctgttcctaaatat 119
           |||||||||||||||||||||||
Sbjct: 1   gtactccctctgttcctaaatat 23




>RF00906;MIR1122;AC174311.25/90843-90999 3880:Medicago truncatula
           (barrel medic)
          Length = 157

 Score = 44.1 bits (22), Expect = 0.001
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 97  gtactccctctgttcctaaatataag 122
           |||||||||||| |||||||||||||
Sbjct: 4   gtactccctctggtcctaaatataag 29




>RF00906;MIR1122;AK248235.1/1048-956 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 93

 Score = 44.1 bits (22), Expect = 0.001
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 98  tactccctctgttcctaaatat 119
           ||||||||||||||||||||||
Sbjct: 5   tactccctctgttcctaaatat 26




>RF00906;MIR1122;FM164415.1/16902-16796 4513:Hordeum vulgare
          Length = 107

 Score = 44.1 bits (22), Expect = 0.001
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 1  ccctccgttcctaaatataagtcttt 26
          |||||| |||||||||||||||||||
Sbjct: 9  ccctcctttcctaaatataagtcttt 34




>RF00906;MIR1122;AP008212.1/4114034-4113904 39947:Oryza sativa
           Japonica Group
          Length = 131

 Score = 44.1 bits (22), Expect = 0.001
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 97  gtactccctctgttcctaaatataag 122
           ||||||||||||| ||||||||||||
Sbjct: 128 gtactccctctgtccctaaatataag 103