miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00690;MIR408;AARH01001232.1/22611-22493 3694:Populus trichocarpa
Length = 119
Score = 54.0 bits (27), Expect = 5e-07
Identities = 70/82 (85%), Gaps = 3/82 (3%)
Strand = Plus / Plus
Query: 34 gggaacagacagagcatggatagagcttacttacagaaacccttttgttttgacccttcc 93
|||||||| |||||||||||| ||||| ||| |||||| ||| |||||| | || ||
Sbjct: 22 gggaacaggcagagcatggatggagct-actaacagaagtactt--gttttggctctacc 78
Query: 94 catgcactgcctcttccctggc 115
||||||||||||||||||||||
Sbjct: 79 catgcactgcctcttccctggc 100
>RF00690;MIR408;AF419552.1/68-193 3702:Arabidopsis thaliana (thale
cress)
Length = 126
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 92 cccatgcactgcctcttccctggc 115
||||||||||||||||||||||||
Sbjct: 84 cccatgcactgcctcttccctggc 107
>RF00690;MIR408;AM434998.2/53932-53808 29760:Vitis vinifera
Length = 125
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 92 cccatgcactgcctcttccctggc 115
||||||||||||||||||||||||
Sbjct: 84 cccatgcactgcctcttccctggc 107
>RF00690;MIR408;BABK01104206.1/188-52 34305:Lotus japonicus
Length = 137
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 94 catgcactgcctcttccctggcc 116
|||||||||||||||||||||||
Sbjct: 97 catgcactgcctcttccctggcc 119
>RF00690;MIR408;AC136840.24/84429-84307 3880:Medicago truncatula
(barrel medic)
Length = 123
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 94 catgcactgcctcttccctggc 115
||||||||||||||||||||||
Sbjct: 83 catgcactgcctcttccctggc 104
>RF00690;MIR408;AC235367.1/71602-71757 3847:Glycine max (soybean)
Length = 156
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 94 catgcactgcctcttccctggc 115
||||||||||||||||||||||
Sbjct: 117 catgcactgcctcttccctggc 138
