miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00677;MIR168;CU302345.1/65608-65728 3880:Medicago truncatula
          (barrel medic)
          Length = 121

 Score = 77.8 bits (39), Expect = 4e-14
 Identities = 39/39 (100%)
 Strand = Plus / Plus

                                                 
Query: 9  cttcgcggtctctaattcgcttggtgcaggtcgggaacc 47
          |||||||||||||||||||||||||||||||||||||||
Sbjct: 3  cttcgcggtctctaattcgcttggtgcaggtcgggaacc 41



 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 116 ggatcccgccttgcatcaactgaatcgga 144
           |||||||||||||||||||||||||||||
Sbjct: 80  ggatcccgccttgcatcaactgaatcgga 108




>RF00677;MIR168;AARH01009157.1/137211-137057 3694:Populus
          trichocarpa
          Length = 155

 Score = 67.9 bits (34), Expect = 4e-11
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 13 gcggtctctaattcgcttggtgcaggtcgggaac 46
          ||||||||||||||||||||||||||||||||||
Sbjct: 7  gcggtctctaattcgcttggtgcaggtcgggaac 40



 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 116 ggatcccgccttgcatcaactgaatcgga 144
           |||||||||||||||||||||||||||||
Sbjct: 114 ggatcccgccttgcatcaactgaatcgga 142




>RF00677;MIR168;AASG02009178.1/8089-7934 3988:Ricinus communis
          (castor bean)
          Length = 156

 Score = 67.9 bits (34), Expect = 4e-11
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 13 gcggtctctaattcgcttggtgcaggtcgggaac 46
          ||||||||||||||||||||||||||||||||||
Sbjct: 7  gcggtctctaattcgcttggtgcaggtcgggaac 40



 Score = 54.0 bits (27), Expect = 6e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 116 ggatcccgccttgcatcaactgaatcg 142
           |||||||||||||||||||||||||||
Sbjct: 115 ggatcccgccttgcatcaactgaatcg 141




>RF00677;MIR168;CAAP02004587.1/23864-24010 29760:Vitis vinifera
          Length = 147

 Score = 67.9 bits (34), Expect = 4e-11
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 15 ggtctctaattcgcttggtgcaggtcgggaaccg 48
          ||||||||||||||||||||||||||||||||||
Sbjct: 9  ggtctctaattcgcttggtgcaggtcgggaaccg 42



 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 117 gatcccgccttgcatcaactgaatcgga 144
           ||||||||||||||||||||||||||||
Sbjct: 107 gatcccgccttgcatcaactgaatcgga 134




>RF00677;MIR168;AM900011.1/89-224 71322:Calepina irregularis
          Length = 136

 Score = 65.9 bits (33), Expect = 2e-10
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                            
Query: 112 gatcggatcccgccttgcatcaactgaatcgga 144
           |||||||||||||||||||||||||||||||||
Sbjct: 91  gatcggatcccgccttgcatcaactgaatcgga 123



 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 13 gcggtctctaattcgcttggtgcaggtcgggaac 46
          ||||||||  ||||||||||||||||||||||||
Sbjct: 7  gcggtctcggattcgcttggtgcaggtcgggaac 40




>RF00677;MIR168;AM900039.1/133-271 98038:Thellungiella halophila
          Length = 139

 Score = 60.0 bits (30), Expect = 1e-08
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                             
Query: 111 ggatcggatcccgccttgcatcaactgaatcgga 144
           |||| |||||||||||||||||||||||||||||
Sbjct: 91  ggattggatcccgccttgcatcaactgaatcgga 124



 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 23 attcgcttggtgcaggtcgggaac 46
          ||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40




>RF00677;MIR168;AM900027.1/105-243 71232:Erysimum cheiri
          Length = 139

 Score = 60.0 bits (30), Expect = 1e-08
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                             
Query: 111 ggatcggatcccgccttgcatcaactgaatcgga 144
           |||| |||||||||||||||||||||||||||||
Sbjct: 92  ggattggatcccgccttgcatcaactgaatcgga 125



 Score = 50.1 bits (25), Expect = 9e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 23 attcgcttggtgcaggtcgggaacc 47
          |||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaacc 41




>RF00677;MIR168;AM900009.1/86-211 50463:Cardamine hirsuta (hairy
          bittercress)
          Length = 126

 Score = 60.0 bits (30), Expect = 1e-08
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                            
Query: 13 gcggtctctaattcgcttggtgcaggtcgggaac 46
          ||||||||| ||||||||||||||||||||||||
Sbjct: 7  gcggtctctgattcgcttggtgcaggtcgggaac 40



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 119 tcccgccttgcatcaactgaatc 141
           |||||||||||||||||||||||
Sbjct: 88  tcccgccttgcatcaactgaatc 110




>RF00677;MIR168;AM900030.1/155-291 264402:Capsella grandiflora
          Length = 137

 Score = 60.0 bits (30), Expect = 1e-08
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                             
Query: 111 ggatcggatcccgccttgcatcaactgaatcgga 144
           |||| |||||||||||||||||||||||||||||
Sbjct: 89  ggattggatcccgccttgcatcaactgaatcgga 122



 Score = 50.1 bits (25), Expect = 9e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 23 attcgcttggtgcaggtcgggaacc 47
          |||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaacc 41




>RF00677;MIR168;DQ108858.1/128-269 3702:Arabidopsis thaliana (thale
           cress)
          Length = 142

 Score = 60.0 bits (30), Expect = 1e-08
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                             
Query: 111 ggatcggatcccgccttgcatcaactgaatcgga 144
           |||| |||||||||||||||||||||||||||||
Sbjct: 95  ggattggatcccgccttgcatcaactgaatcgga 128



 Score = 50.1 bits (25), Expect = 9e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 23 attcgcttggtgcaggtcgggaacc 47
          |||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaacc 41




>RF00677;MIR168;EF145817.1/52-230 3694:Populus trichocarpa
          Length = 179

 Score = 60.0 bits (30), Expect = 1e-08
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                            
Query: 13 gcggtctctaattcgcttggtgcaggtcgggaac 46
          ||||||||| ||||||||||||||||||||||||
Sbjct: 7  gcggtctctgattcgcttggtgcaggtcgggaac 40



 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 116 ggatcccgccttgcatcaactgaatcgga 144
           |||||||||||||||||||||||||||||
Sbjct: 138 ggatcccgccttgcatcaactgaatcgga 166




>RF00677;MIR168;ABIM01019962.1/1-76 3649:Carica papaya (papaya)
          Length = 76

 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 116 ggatcccgccttgcatcaactgaatcgga 144
           |||||||||||||||||||||||||||||
Sbjct: 35  ggatcccgccttgcatcaactgaatcgga 63




>RF00677;MIR168;AM900025.1/123-261 81982:Pseudoturritis turrita
          Length = 139

 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 116 ggatcccgccttgcatcaactgaatcgga 144
           |||||||||||||||||||||||||||||
Sbjct: 96  ggatcccgccttgcatcaactgaatcgga 124



 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 23 attcgcttggtgcaggtcgggaac 46
          ||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40




>RF00677;MIR168;AM900031.1/134-271 50463:Cardamine hirsuta (hairy
           bittercress)
          Length = 138

 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 116 ggatcccgccttgcatcaactgaatcgga 144
           |||||||||||||||||||||||||||||
Sbjct: 96  ggatcccgccttgcatcaactgaatcgga 124



 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 23 attcgcttggtgcaggtcgggaac 46
          ||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40




>RF00677;MIR168;AM900013.1/66-191 313683:Malcolmia maritima
          Length = 126

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 13 gcggtctctaattcgcttggtgcaggtcgggaac 46
          ||||||||  ||||||||||||||||||||||||
Sbjct: 7  gcggtctcagattcgcttggtgcaggtcgggaac 40




>RF00677;MIR168;AM900035.1/113-248 264416:Diplotaxis tenuifolia
          Length = 136

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 119 tcccgccttgcatcaactgaatcgga 144
           ||||||||||||||||||||||||||
Sbjct: 96  tcccgccttgcatcaactgaatcgga 121



 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 23 attcgcttggtgcaggtcggga 44
          ||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcggga 38




>RF00677;MIR168;AM900033.1/151-286 71322:Calepina irregularis
          Length = 136

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 119 tcccgccttgcatcaactgaatcgga 144
           ||||||||||||||||||||||||||
Sbjct: 98  tcccgccttgcatcaactgaatcgga 123



 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 23 attcgcttggtgcaggtcgggaac 46
          ||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40




>RF00677;MIR168;AC232514.1/122335-122471 51351:Brassica rapa subsp.
           pekinensis
          Length = 137

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                             
Query: 111 ggatcggatcccgccttgcatcaactgaatcgga 144
           |||| ||||||||||||||||||| |||||||||
Sbjct: 89  ggattggatcccgccttgcatcaaatgaatcgga 122



 Score = 50.1 bits (25), Expect = 9e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 23 attcgcttggtgcaggtcgggaacc 47
          |||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaacc 41




>RF00677;MIR168;AB020744.1/40369-40244 3702:Arabidopsis thaliana
          (thale cress)
          Length = 126

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 13 gcggtctctaattcgcttggtgcaggtcgggaac 46
          ||||||||  ||||||||||||||||||||||||
Sbjct: 7  gcggtctcggattcgcttggtgcaggtcgggaac 40




>RF00677;MIR168;CU302337.1/59396-59285 3880:Medicago truncatula
          (barrel medic)
          Length = 112

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 18 ctctaattcgcttggtgcaggtcgggaacc 47
          |||| |||||||||||||||||||||||||
Sbjct: 12 ctctgattcgcttggtgcaggtcgggaacc 41




>RF00677;MIR168;AM900001.1/83-191 72657:Aethionema grandiflorum
          Length = 109

 Score = 50.1 bits (25), Expect = 9e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 117 gatcccgccttgcatcaactgaatc 141
           |||||||||||||||||||||||||
Sbjct: 69  gatcccgccttgcatcaactgaatc 93



 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 23 attcgcttggtgcaggtcgggaac 46
          ||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40




>RF00677;MIR168;AM900008.1/99-224 264402:Capsella grandiflora
          Length = 126

 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 23 attcgcttggtgcaggtcgggaac 46
          ||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40



 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 123 gccttgcatcaactgaatcgga 144
           ||||||||||||||||||||||
Sbjct: 92  gccttgcatcaactgaatcgga 113




>RF00677;MIR168;AM900024.1/109-239 72657:Aethionema grandiflorum
          Length = 131

 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 23 attcgcttggtgcaggtcgggaac 46
          ||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40



 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 119 tcccgccttgcatcaactgaatcggaac 146
           |||||| |||||||||||||||||||||
Sbjct: 92  tcccgctttgcatcaactgaatcggaac 119




>RF00677;MIR168;AM900012.1/30-111 264416:Diplotaxis tenuifolia
          Length = 82

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 111 ggatcggatcccgccttgcatcaactgaatc 141
           ||||||||||| ||||| |||||||||||||
Sbjct: 36  ggatcggatcctgccttccatcaactgaatc 66




>RF00677;MIR168;BT069329.1/34-135 4577:Zea mays
          Length = 102

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 115 cggatcccgccttgcatcaactgaatcgga 144
           |||||||||||||||| ||| |||||||||
Sbjct: 60  cggatcccgccttgcaccaagtgaatcgga 89




>RF00677;MIR168;AP004886.3/116669-116566 39947:Oryza sativa Japonica
           Group
          Length = 104

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 115 cggatcccgccttgcatcaactgaatcgga 144
           |||||||||||||||| ||| |||||||||
Sbjct: 62  cggatcccgccttgcaccaagtgaatcgga 91