miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00073;mir-156;AASG02001561.1/34616-34535 3988:Ricinus communis
(castor bean)
Length = 82
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 31 ttgacagaagagagtgagcacagagaggca 60
|||||||||||||||||||||| |||||||
Sbjct: 1 ttgacagaagagagtgagcacacagaggca 30
>RF00073;mir-156;AM456699.2/13257-13176 29760:Vitis vinifera
Length = 82
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 32 tgacagaagagagtgagcacagagaggcaa 61
||||||||||||||||||||| ||||||||
Sbjct: 2 tgacagaagagagtgagcacacagaggcaa 31
>RF00073;mir-156;ABIM01019325.1/182-263 3649:Carica papaya
(papaya)
Length = 82
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 31 ttgacagaagagagtgagcacagagag 57
|||||||||||||||||||||| ||||
Sbjct: 1 ttgacagaagagagtgagcacacagag 27
>RF00073;mir-156;AL391222.1/7873-7786 3702:Arabidopsis thaliana
(thale cress)
Length = 88
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 31 ttgacagaagagagtgagcaca 52
||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcaca 22
>RF00073;mir-156;EU548281.1/284-201 3702:Arabidopsis thaliana
(thale cress)
Length = 84
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 32 tgacagaagagagtgagcacagagaggcaa 61
||||||||||||||||||||| | ||||||
Sbjct: 2 tgacagaagagagtgagcacacaaaggcaa 31
>RF00073;mir-156;EF692358.1/99-183 3899:Trifolium repens (white
clover)
Length = 85
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 31 ttgacagaagagagtgagcaca 52
||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcaca 22
>RF00073;mir-156;AC159537.24/87146-87063 3880:Medicago truncatula
(barrel medic)
Length = 84
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 31 ttgacagaagagagtgagcaca 52
||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcaca 22
>RF00073;mir-156;CU019603.9/39808-39728 3880:Medicago truncatula
(barrel medic)
Length = 81
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 31 ttgacagaagagagtgagcaca 52
||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcaca 22
>RF00073;mir-156;AP010300.1/44116-44196 34305:Lotus japonicus
Length = 81
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 31 ttgacagaagagagtgagcaca 52
||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcaca 22
>RF00073;mir-156;AM449200.1/5253-5335 29760:Vitis vinifera
Length = 83
Score = 44.1 bits (22), Expect = 5e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 32 tgacagaagagagtgagcacagagaggcaaattgtata 69
||||||||||||||||||||| |||||| |||||||
Sbjct: 2 tgacagaagagagtgagcacatgcaggcaatttgtata 39
>RF00073;mir-156;ABXC01002449.1/27576-27491 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 31 ttgacagaagagagtgagcaca 52
||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcaca 22
>RF00073;mir-156;ABXC01001718.1/172900-172815 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 31 ttgacagaagagagtgagcaca 52
||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcaca 22
>RF00073;mir-156;AK073452.1/342-427 39947:Oryza sativa Japonica
Group
Length = 86
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 31 ttgacagaagagagtgagcaca 52
||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcaca 22
>RF00073;mir-156;CU406049.1/183-270 4529:Oryza rufipogon
Length = 88
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 31 ttgacagaagagagtgagcaca 52
||||||||||||||||||||||
Sbjct: 1 ttgacagaagagagtgagcaca 22
>RF00073;mir-156;ABEU01000369.1/338030-338109
145481:Physcomitrella patens subsp. patens
Length = 80
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 tgacagaagagagtgagcacag 53
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacag 23
>RF00073;mir-156;ABEU01001319.1/101465-101387
145481:Physcomitrella patens subsp. patens
Length = 79
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 tgacagaagagagtgagcacag 53
||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacag 23
