miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AAAA02020856.1/51643-51799 39946:Oryza sativa
           Indica Group
          Length = 157

 Score = 50.1 bits (25), Expect = 3e-06
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                            
Query: 11  atagtattatgaatttggacatgggactagtccagattcgtagtactat 59
           |||||| || |||||||| || | |||| ||||||||||||||||||||
Sbjct: 103 atagtactacgaatttggccaggagacttgtccagattcgtagtactat 55




>RF00906;MIR1122;AAAA02016804.1/14776-14638 39946:Oryza sativa
          Indica Group
          Length = 139

 Score = 42.1 bits (21), Expect = 8e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 40 gtccagattcgtagtactata 60
          |||||||||||||||||||||
Sbjct: 66 gtccagattcgtagtactata 86




>RF00906;MIR1122;AL662994.3/47869-47760 39947:Oryza sativa
          Japonica Group
          Length = 110

 Score = 42.1 bits (21), Expect = 8e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 38 tagtccagattcgtagtacta 58
          |||||||||||||||||||||
Sbjct: 56 tagtccagattcgtagtacta 76




>RF00906;MIR1122;AC097277.6/29364-29210 39947:Oryza sativa Japonica
           Group
          Length = 155

 Score = 42.1 bits (21), Expect = 8e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 38  tagtccagattcgtagtacta 58
           |||||||||||||||||||||
Sbjct: 80  tagtccagattcgtagtacta 100