miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AAAA02020856.1/51643-51799 39946:Oryza sativa
Indica Group
Length = 157
Score = 50.1 bits (25), Expect = 3e-06
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 11 atagtattatgaatttggacatgggactagtccagattcgtagtactat 59
|||||| || |||||||| || | |||| ||||||||||||||||||||
Sbjct: 103 atagtactacgaatttggccaggagacttgtccagattcgtagtactat 55
>RF00906;MIR1122;AAAA02016804.1/14776-14638 39946:Oryza sativa
Indica Group
Length = 139
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 40 gtccagattcgtagtactata 60
|||||||||||||||||||||
Sbjct: 66 gtccagattcgtagtactata 86
>RF00906;MIR1122;AL662994.3/47869-47760 39947:Oryza sativa
Japonica Group
Length = 110
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 38 tagtccagattcgtagtacta 58
|||||||||||||||||||||
Sbjct: 56 tagtccagattcgtagtacta 76
>RF00906;MIR1122;AC097277.6/29364-29210 39947:Oryza sativa Japonica
Group
Length = 155
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 38 tagtccagattcgtagtacta 58
|||||||||||||||||||||
Sbjct: 80 tagtccagattcgtagtacta 100