miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00689;MIR390;AM442301.1/4341-4465 29760:Vitis vinifera
          Length = 125

 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                           
Query: 12 agaatctgttaaactcaggagggatagcgccac 44
          |||||||||||| ||||||||||||||||||||
Sbjct: 5  agaatctgttaagctcaggagggatagcgccac 37




>RF00689;MIR390;ABIM01002245.1/567-665 3649:Carica papaya (papaya)
          Length = 99

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 12 agaatctgttaaactcaggagggatagcgcca 43
          |||||||||||| |||||||||||||||||||
Sbjct: 5  agaatctgttaagctcaggagggatagcgcca 36




>RF00689;MIR390;ABIM01001395.1/10315-10183 3649:Carica papaya
           (papaya)
          Length = 133

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                               
Query: 67  tggcgctatctatccagagtttcacggcttcttctt 102
           ||||||||||||||| ||||||||||| ||||||||
Sbjct: 98  tggcgctatctatcctgagtttcacgggttcttctt 133



 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                          
Query: 12 agaatctgttaaactcaggagggatagcgcca 43
          ||||||||| || |||||||||||||||||||
Sbjct: 5  agaatctgtaaagctcaggagggatagcgcca 36




>RF00689;MIR390;AARH01000472.1/96655-96783 3694:Populus
          trichocarpa
          Length = 129

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 12 agaatctgttaaactcaggagggatagcgcca 43
          |||||||||||| |||||||||||||||||||
Sbjct: 5  agaatctgttaagctcaggagggatagcgcca 36




>RF00689;MIR390;AC143338.29/35527-35410 3880:Medicago truncatula
          (barrel medic)
          Length = 118

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 12 agaatctgttaaactcaggagggatagcgcca 43
          |||||||||||| |||||||||||||||||||
Sbjct: 5  agaatctgttaagctcaggagggatagcgcca 36




>RF00689;MIR390;CAAP02001430.1/46926-46781 29760:Vitis vinifera
          Length = 146

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                          
Query: 12 agaatctgttaaactcaggagggatagcgcca 43
          |||||||||||| |||||||||||||||||||
Sbjct: 5  agaatctgttaagctcaggagggatagcgcca 36



 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                               
Query: 67  tggcgctatctatccagagtttcacggcttcttctt 102
           ||||||||||||||| ||||||||||| ||||||||
Sbjct: 111 tggcgctatctatcctgagtttcacgggttcttctt 146




>RF00689;MIR390;AARH01006918.1/30613-30728 3694:Populus
          trichocarpa
          Length = 116

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 12 agaatctgttaaactcaggagggatagcgcc 42
          |||||||||||| ||||||||||||||||||
Sbjct: 5  agaatctgttaagctcaggagggatagcgcc 35




>RF00689;MIR390;AARH01003823.1/151507-151375 3694:Populus
          trichocarpa
          Length = 133

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 15 atctgttaaactcaggagggatagcgcca 43
          ||||||||| |||||||||||||||||||
Sbjct: 8  atctgttaagctcaggagggatagcgcca 36




>RF00689;MIR390;AC189543.2/98818-98914 51351:Brassica rapa subsp.
          pekinensis
          Length = 97

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                          
Query: 12 agaatctgttaaactcaggagggatagcgcca 43
          ||||||||| || |||||||||||||||||||
Sbjct: 5  agaatctgtaaagctcaggagggatagcgcca 36




>RF00689;MIR390;FM163955.1/147-245 3702:Arabidopsis thaliana
          (thale cress)
          Length = 99

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                          
Query: 12 agaatctgttaaactcaggagggatagcgcca 43
          ||||||||| || |||||||||||||||||||
Sbjct: 5  agaatctgtaaagctcaggagggatagcgcca 36




>RF00689;MIR390;AC235430.1/64014-64117 3847:Glycine max (soybean)
          Length = 104

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                          
Query: 12 agaatctgttaaactcaggagggatagcgcca 43
          ||||||||| || |||||||||||||||||||
Sbjct: 5  agaatctgtaaagctcaggagggatagcgcca 36




>RF00689;MIR390;AASG02000259.1/53979-54102 3988:Ricinus communis
          (castor bean)
          Length = 124

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 16 tctgttaaactcaggagggatagcgcc 42
          |||||||| ||||||||||||||||||
Sbjct: 9  tctgttaagctcaggagggatagcgcc 35