miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00648;MIR396;AARH01002977.1/26105-26230 3694:Populus trichocarpa
Length = 126
Score = 67.9 bits (34), Expect = 6e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 186 gttgcggttcaataaagctgtgggaagatacaaa 219
||||||||||||||||||||||||||||||||||
Sbjct: 91 gttgcggttcaataaagctgtgggaagatacaaa 124
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 23 gtattcttcctcagctttcttgaactgca 51
|||||||||| ||||||||||||||||||
Sbjct: 5 gtattcttccacagctttcttgaactgca 33
>RF00648;MIR396;AARH01007577.1/181152-181286 3694:Populus
trichocarpa
Length = 135
Score = 63.9 bits (32), Expect = 1e-09
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 188 tgcggttcaataaagctgtgggaagatacaaa 219
||||||||||||||||||||||||||||||||
Sbjct: 102 tgcggttcaataaagctgtgggaagatacaaa 133
Score = 58.0 bits (29), Expect = 6e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 19 ctttgtattcttcctcagctttcttgaactgca 51
|||||||||||||| ||||||||||||||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgca 33
>RF00648;MIR396;AASG02007435.1/277-442 3988:Ricinus communis
(castor bean)
Length = 166
Score = 63.9 bits (32), Expect = 1e-09
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 19 ctttgtattcttcctcagctttcttgaactgcatct 54
|||||||||||||| |||||||||||||||||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgcatct 36
Score = 60.0 bits (30), Expect = 1e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 187 ttgcggttcaataaagctgtgggaagatac 216
||||||||||||||||||||||||||||||
Sbjct: 132 ttgcggttcaataaagctgtgggaagatac 161
>RF00648;MIR396;ABIM01011222.1/24137-24037 3649:Carica papaya
(papaya)
Length = 101
Score = 61.9 bits (31), Expect = 4e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 187 ttgcggttcaataaagctgtgggaagataca 217
|||||||||||||||||||||||||||||||
Sbjct: 67 ttgcggttcaataaagctgtgggaagataca 97
Score = 58.0 bits (29), Expect = 6e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 20 tttgtattcttcctcagctttcttgaactgcat 52
||||||||||||| |||||||||||||||||||
Sbjct: 2 tttgtattcttccacagctttcttgaactgcat 34
>RF00648;MIR396;AC006250.4/85478-85629 3702:Arabidopsis thaliana
(thale cress)
Length = 152
Score = 61.9 bits (31), Expect = 4e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 187 ttgcggttcaataaagctgtgggaagataca 217
|||||||||||||||||||||||||||||||
Sbjct: 118 ttgcggttcaataaagctgtgggaagataca 148
Score = 52.0 bits (26), Expect = 4e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 22 tgtattcttcctcagctttcttgaactgca 51
||||||||||| ||||||||||||||||||
Sbjct: 4 tgtattcttccacagctttcttgaactgca 33
>RF00648;MIR396;AC153121.15/56895-56790 3880:Medicago truncatula
(barrel medic)
Length = 106
Score = 61.9 bits (31), Expect = 4e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 19 ctttgtattcttcctcagctttcttgaactgcatc 53
|||||||||||||| ||||||||||||||||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgcatc 35
Score = 61.9 bits (31), Expect = 4e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 187 ttgcggttcaataaagctgtgggaagataca 217
|||||||||||||||||||||||||||||||
Sbjct: 72 ttgcggttcaataaagctgtgggaagataca 102
>RF00648;MIR396;AP010531.1/68027-68126 34305:Lotus japonicus
Length = 100
Score = 61.9 bits (31), Expect = 4e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 19 ctttgtattcttcctcagctttcttgaactgcatc 53
|||||||||||||| ||||||||||||||||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgcatc 35
Score = 58.0 bits (29), Expect = 6e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 187 ttgcggttcaataaagctgtgggaagata 215
|||||||||||||||||||||||||||||
Sbjct: 66 ttgcggttcaataaagctgtgggaagata 94
>RF00648;MIR396;AM489352.2/7330-7448 29760:Vitis vinifera
Length = 119
Score = 61.9 bits (31), Expect = 4e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 186 gttgcggttcaataaagctgtgggaagatac 216
|||||||||||||||||||||||||||||||
Sbjct: 84 gttgcggttcaataaagctgtgggaagatac 114
Score = 60.0 bits (30), Expect = 1e-08
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 19 ctttgtattcttcctcagctttcttgaactgcat 52
|||||||||||||| |||||||||||||||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgcat 34
>RF00648;MIR396;AAAA02018332.1/10514-10398 39946:Oryza sativa
Indica Group
Length = 117
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 27 tcttcctcagctttcttgaactgcatctt 55
|||||| ||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgcatctt 37
>RF00648;MIR396;ABXC01006376.1/116039-116148 4558:Sorghum bicolor
(sorghum)
Length = 110
Score = 48.1 bits (24), Expect = 6e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 27 tcttcctcagctttcttgaactgcatct 54
|||||| |||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgcatct 36
>RF00648;MIR396;EU941272.1/182-300 4577:Zea mays
Length = 119
Score = 44.1 bits (22), Expect = 9e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 27 tcttcctcagctttcttgaactgcat 52
|||||| |||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgcat 34
>RF00648;MIR396;ABXC01002982.1/44228-44122 4558:Sorghum bicolor
(sorghum)
Length = 107
Score = 44.1 bits (22), Expect = 9e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 27 tcttcctcagctttcttgaactgcat 52
|||||| |||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgcat 34
