miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00648;MIR396;AM489352.2/13768-13664 29760:Vitis vinifera
Length = 105
Score = 61.9 bits (31), Expect = 3e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 24 tgccatgcttttccacagctttcttgaactt 54
|||||||||||||||||||||||||||||||
Sbjct: 1 tgccatgcttttccacagctttcttgaactt 31
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 111 aagttcaagaaagctgtgggaaa 133
|||||||||||||||||||||||
Sbjct: 74 aagttcaagaaagctgtgggaaa 96
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 25 gccatgcttttccacagctttcttgaactt 54
|||||| ||| |||||||||||||||||||
Sbjct: 103 gccatggtttcccacagctttcttgaactt 74
>RF00648;MIR396;AARH01007577.1/188194-188047 3694:Populus
trichocarpa
Length = 148
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 27 catgcttttccacagctttcttgaactt 54
||||||||||||||||||||||||||||
Sbjct: 4 catgcttttccacagctttcttgaactt 31
>RF00648;MIR396;AARH01001850.1/327743-327639 3694:Populus
trichocarpa
Length = 105
Score = 56.0 bits (28), Expect = 2e-07
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 23 ctgccatgcttttccacagctttcttgaactt 54
|||||||| |||||||||||||||||||||||
Sbjct: 105 ctgccatgtttttccacagctttcttgaactt 74
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 111 aagttcaagaaagctgtgggaaaatatggc 140
||||||||||||||||||| |||| |||||
Sbjct: 74 aagttcaagaaagctgtggaaaaacatggc 103
>RF00648;MIR396;AARH01002977.1/33014-32858 3694:Populus
trichocarpa
Length = 157
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 27 catgcttttccacagctttcttgaactt 54
||||||||||||||||||||||||||||
Sbjct: 4 catgcttttccacagctttcttgaactt 31
>RF00648;MIR396;AASG02001279.1/18109-18241 3988:Ricinus communis
(castor bean)
Length = 133
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 27 catgcttttccacagctttcttgaactt 54
||||||||||||||||||||||||||||
Sbjct: 4 catgcttttccacagctttcttgaactt 31
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 111 aagttcaagaaagctgtgggaaaatatggc 140
||||||||||||||||||||| || |||||
Sbjct: 102 aagttcaagaaagctgtgggagaacatggc 131
>RF00648;MIR396;AC153121.15/48150-48253 3880:Medicago truncatula
(barrel medic)
Length = 104
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 27 catgcttttccacagctttcttgaactt 54
||||||||||||||||||||||||||||
Sbjct: 4 catgcttttccacagctttcttgaactt 31
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 115 tcaagaaagctgtgggaaaatatggc 140
||||||||||||||||| ||||||||
Sbjct: 77 tcaagaaagctgtgggagaatatggc 102
>RF00648;MIR396;AP010531.1/73143-73036 34305:Lotus japonicus
Length = 108
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 27 catgcttttccacagctttcttgaactt 54
||||||||||||||||||||||||||||
Sbjct: 4 catgcttttccacagctttcttgaactt 31
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 115 tcaagaaagctgtgggaaaatatggc 140
|||||||||| |||||||||||||||
Sbjct: 81 tcaagaaagccgtgggaaaatatggc 106
>RF00648;MIR396;CAAP02000554.1/84783-84895 29760:Vitis vinifera
Length = 113
Score = 54.0 bits (27), Expect = 6e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 27 catgcttttccacagctttcttgaact 53
|||||||||||||||||||||||||||
Sbjct: 4 catgcttttccacagctttcttgaact 30
>RF00648;MIR396;ABXC01002982.1/36897-37040 4558:Sorghum bicolor
(sorghum)
Length = 144
Score = 54.0 bits (27), Expect = 6e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 24 tgccatgcttttccacagctttcttgaactt 54
|||||||| ||||||||||||||||||||||
Sbjct: 1 tgccatgcctttccacagctttcttgaactt 31
>RF00648;MIR396;AP008208.1/34306506-34306365 39947:Oryza sativa
Japonica Group
Length = 142
Score = 54.0 bits (27), Expect = 6e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 24 tgccatgcttttccacagctttcttgaactt 54
|||||||| ||||||||||||||||||||||
Sbjct: 1 tgccatgcctttccacagctttcttgaactt 31
>RF00648;MIR396;FM164183.1/100-235 3702:Arabidopsis thaliana
(thale cress)
Length = 136
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 31 cttttccacagctttcttgaactttc 56
||||||||||||||||||||||||||
Sbjct: 8 cttttccacagctttcttgaactttc 33
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 109 gaaagttcaagaaagctgtgggaaaatatg 138
||||||||||||||||||||| ||| ||||
Sbjct: 33 gaaagttcaagaaagctgtggaaaagtatg 4
>RF00648;MIR396;FJ085642.1/369-262 3352:Pinus taeda (loblolly
pine)
Length = 108
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 31 cttttccacagctttcttgaacttt 55
|||||||||||||||||||||||||
Sbjct: 8 cttttccacagctttcttgaacttt 32
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 26 ccatgcttttccacagctttcttgaacttt 55
||||||||| |||||| |||||||||||||
Sbjct: 105 ccatgctttcccacagttttcttgaacttt 76
>RF00648;MIR396;ABIM01011222.1/17767-17925 3649:Carica papaya
(papaya)
Length = 159
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 27 catgcttttccacagctttcttgaactt 54
|||| |||||||||||||||||||||||
Sbjct: 4 catgtttttccacagctttcttgaactt 31
>RF00648;MIR396;AARH01003359.1/52522-52352 3694:Populus
trichocarpa
Length = 171
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 27 catgcttttccacagctttcttgaactt 54
||||||||||||| ||||||||||||||
Sbjct: 4 catgcttttccacggctttcttgaactt 31
>RF00648;MIR396;AC209588.1/2779-2519 4081:Solanum lycopersicum
Length = 261
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 27 catgcttttccacagctttcttgaactt 54
|||| |||||||||||||||||||||||
Sbjct: 4 catgtttttccacagctttcttgaactt 31
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 110 aaagttcaagaaagctgtgggaaaatatgg 139
|||||||||||||| |||||||||| ||||
Sbjct: 229 aaagttcaagaaagttgtgggaaaagatgg 258
>RF00648;MIR396;AM481354.2/2056-2230 29760:Vitis vinifera
Length = 175
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 27 catgcttttccacagctttcttgaactt 54
||||||||||||| ||||||||||||||
Sbjct: 4 catgcttttccacggctttcttgaactt 31
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 111 aagttcaagaaagctgtgggaaaatatg 138
|||||||||||||| |||||||||||||
Sbjct: 144 aagttcaagaaagccgtgggaaaatatg 171
>RF00648;MIR396;AC226039.1/69968-70054 4641:Musa acuminata
Length = 87
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 111 aagttcaagaaagctgtgggaaaatatg 138
||||||||||||||||||| ||||||||
Sbjct: 31 aagttcaagaaagctgtggaaaaatatg 4
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 32 ttttccacagctttcttgaactt 54
|||||||||||||||||||||||
Sbjct: 9 ttttccacagctttcttgaactt 31
