miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00704;MIR397;ABXC01002436.1/11519-11410 4558:Sorghum bicolor
(sorghum)
Length = 110
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 15 aaggcatcattgagtgcagcgttgatgag 43
|||||||||||||||||||||||||||||
Sbjct: 5 aaggcatcattgagtgcagcgttgatgag 33
>RF00704;MIR397;ABIM01007603.1/10199-10104 3649:Carica papaya
(papaya)
Length = 96
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 19 catcattgagtgcagcgttgatgag 43
|||||||||||||||||||||||||
Sbjct: 9 catcattgagtgcagcgttgatgag 33
>RF00704;MIR397;AK109752.1/55-170 39947:Oryza sativa Japonica
Group
Length = 116
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 14 gaaggcatcattgagtgcagcgttgatga 42
|||||||| ||||||||||||||||||||
Sbjct: 4 gaaggcattattgagtgcagcgttgatga 32
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 80 ttcaccaacgctgcacccaataatgccttc 109
|||| ||||||||||| |||||||||||||
Sbjct: 33 ttcatcaacgctgcactcaataatgccttc 4
>RF00704;MIR397;AP003766.3/37038-37149 39947:Oryza sativa Japonica
Group
Length = 112
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 18 gcatcattgagtgcagcgttgatga 42
|||||||||||||||||||||||||
Sbjct: 8 gcatcattgagtgcagcgttgatga 32
>RF00704;MIR397;EF148834.1/45-164 3695:Populus trichocarpa x
Populus deltoides
Length = 120
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 19 catcattgagtgcagcgttgatga 42
||||||||||||||||||||||||
Sbjct: 9 catcattgagtgcagcgttgatga 32
>RF00704;MIR397;CAAP02007812.1/4570-4691 29760:Vitis vinifera
Length = 122
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 19 catcattgagtgcagcgttgatga 42
||||||||||||||||||||||||
Sbjct: 9 catcattgagtgcagcgttgatga 32
>RF00704;MIR397;AC189186.2/40150-40047 51351:Brassica rapa subsp.
pekinensis
Length = 104
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 catcattgagtgcagcgttgatg 41
|||||||||||||||||||||||
Sbjct: 9 catcattgagtgcagcgttgatg 31
>RF00704;MIR397;AC012392.1/95144-95040 3702:Arabidopsis thaliana
(thale cress)
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 catcattgagtgcagcgttgatg 41
|||||||||||||||||||||||
Sbjct: 9 catcattgagtgcagcgttgatg 31
>RF00704;MIR397;BT054669.1/878-809 4577:Zea mays
Length = 70
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 18 gcatcattgagtgcagcgttgatgag 43
||||||||||||||||| ||||||||
Sbjct: 8 gcatcattgagtgcagctttgatgag 33
