miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00247;mir-160;AASG02024242.1/1209-1298 3988:Ricinus communis
           (castor bean)
          Length = 90

 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                        
Query: 65  ccatggattggcaactgcggctggcgtgtgaggagccaagcatac 109
           |||||||||||| | ||| | ||||||| ||||||||||||||||
Sbjct: 46  ccatggattggctattgccggtggcgtgcgaggagccaagcatac 90




>RF00247;mir-160;AY728427.1/2-87 3694:Populus trichocarpa
          Length = 86

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 20 tgtgcctggctccctgcatgcca 42
          |||||||||||||||||||||||
Sbjct: 2  tgtgcctggctccctgcatgcca 24




>RF00247;mir-160;CAAP02006197.1/486-575 29760:Vitis vinifera
          Length = 90

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 80  tgcggctggcgtgtgaggagccaagcatac 109
           ||||| ||||||| ||||||||||||||||
Sbjct: 61  tgcgggtggcgtgcgaggagccaagcatac 90




>RF00247;mir-160;ABXC01000057.1/79229-79124 4558:Sorghum bicolor
           (sorghum)
          Length = 106

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 78  actgcggctggcgtgtgaggagccaagcat 107
           ||||||| ||||||| ||||||||||||||
Sbjct: 75  actgcggatggcgtgcgaggagccaagcat 104




>RF00247;mir-160;ABXC01004530.1/55208-55296 4558:Sorghum bicolor
          (sorghum)
          Length = 89

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 20 tgtgcctggctccctgcatgccactc 45
          |||||||||||||||| |||||||||
Sbjct: 2  tgtgcctggctccctgtatgccactc 27




>RF00247;mir-160;EU798771.1/193-98 58934:Zizania latifolia
          Length = 96

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 20 tgtgcctggctccctgcatgccactc 45
          |||||||||||||||| |||||||||
Sbjct: 2  tgtgcctggctccctgtatgccactc 27




>RF00247;mir-160;AAAA02022910.1/14752-14660 39946:Oryza sativa
          Indica Group
          Length = 93

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 20 tgtgcctggctccctgcatgccactc 45
          |||||||||||||||| |||||||||
Sbjct: 2  tgtgcctggctccctgtatgccactc 27




>RF00247;mir-160;AAAA02011132.1/25365-25500 39946:Oryza sativa
           Indica Group
          Length = 136

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 78  actgcggctggcgtgtgaggagccaagcat 107
           ||||||| ||||||| ||||||||||||||
Sbjct: 105 actgcggatggcgtgcgaggagccaagcat 134