miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00247;mir-160;AASG02024242.1/1209-1298 3988:Ricinus communis
(castor bean)
Length = 90
Score = 50.1 bits (25), Expect = 7e-06
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 65 ccatggattggcaactgcggctggcgtgtgaggagccaagcatac 109
|||||||||||| | ||| | ||||||| ||||||||||||||||
Sbjct: 46 ccatggattggctattgccggtggcgtgcgaggagccaagcatac 90
>RF00247;mir-160;AY728427.1/2-87 3694:Populus trichocarpa
Length = 86
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 tgtgcctggctccctgcatgcca 42
|||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgcatgcca 24
>RF00247;mir-160;CAAP02006197.1/486-575 29760:Vitis vinifera
Length = 90
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 80 tgcggctggcgtgtgaggagccaagcatac 109
||||| ||||||| ||||||||||||||||
Sbjct: 61 tgcgggtggcgtgcgaggagccaagcatac 90
>RF00247;mir-160;ABXC01000057.1/79229-79124 4558:Sorghum bicolor
(sorghum)
Length = 106
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 78 actgcggctggcgtgtgaggagccaagcat 107
||||||| ||||||| ||||||||||||||
Sbjct: 75 actgcggatggcgtgcgaggagccaagcat 104
>RF00247;mir-160;ABXC01004530.1/55208-55296 4558:Sorghum bicolor
(sorghum)
Length = 89
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 20 tgtgcctggctccctgcatgccactc 45
|||||||||||||||| |||||||||
Sbjct: 2 tgtgcctggctccctgtatgccactc 27
>RF00247;mir-160;EU798771.1/193-98 58934:Zizania latifolia
Length = 96
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 20 tgtgcctggctccctgcatgccactc 45
|||||||||||||||| |||||||||
Sbjct: 2 tgtgcctggctccctgtatgccactc 27
>RF00247;mir-160;AAAA02022910.1/14752-14660 39946:Oryza sativa
Indica Group
Length = 93
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 20 tgtgcctggctccctgcatgccactc 45
|||||||||||||||| |||||||||
Sbjct: 2 tgtgcctggctccctgtatgccactc 27
>RF00247;mir-160;AAAA02011132.1/25365-25500 39946:Oryza sativa
Indica Group
Length = 136
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 78 actgcggctggcgtgtgaggagccaagcat 107
||||||| ||||||| ||||||||||||||
Sbjct: 105 actgcggatggcgtgcgaggagccaagcat 134