miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
          Length = 194

 Score = 65.9 bits (33), Expect = 2e-10
 Identities = 67/77 (87%), Gaps = 1/77 (1%)
 Strand = Plus / Plus

                                                                      
Query: 11 gtggagctccttgaagtccaaaggagggtcttggttgggtggattgagctgctggtttat 70
          |||||||||||||||||||||  |||||||||   ||||| |||||||||||||  ||||
Sbjct: 10 gtggagctccttgaagtccaatagagggtctt-actgggtagattgagctgctgacttat 68

                           
Query: 71 ggattccactgccctat 87
          |||| |||| |||||||
Sbjct: 69 ggatcccacagccctat 85



 Score = 63.9 bits (32), Expect = 9e-10
 Identities = 69/80 (86%), Gaps = 1/80 (1%)
 Strand = Plus / Plus

                                                                       
Query: 136 ggataggcttgtggtttgcataactcaggagctgcatcaacccagcct-gacctttattt 194
           |||||||||||||| ||||||| |||||||||||||| | || ||  | || | || |||
Sbjct: 105 ggataggcttgtggcttgcatatctcaggagctgcattatccaagtttagatccttgttt 164

                               
Query: 195 ggattgaagggagctctaca 214
           ||||||||||||||||||||
Sbjct: 165 ggattgaagggagctctaca 184




>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
           (papaya)
          Length = 194

 Score = 58.0 bits (29), Expect = 5e-08
 Identities = 66/77 (85%), Gaps = 1/77 (1%)
 Strand = Plus / Plus

                                                                       
Query: 139 taggcttgtggtttgcataactcaggagctgcatcaacc-cagcctgacctttatttgga 197
           |||||||| |||||||||| |||||||||||||| | ||  ||| | | | || ||||||
Sbjct: 108 taggcttgcggtttgcatatctcaggagctgcattaccctaagcttaatccttgtttgga 167

                            
Query: 198 ttgaagggagctctaca 214
           |||||||||||||||||
Sbjct: 168 ttgaagggagctctaca 184




>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
          (castor bean)
          Length = 194

 Score = 58.0 bits (29), Expect = 5e-08
 Identities = 66/77 (85%), Gaps = 1/77 (1%)
 Strand = Plus / Plus

                                                                      
Query: 11 gtggagctccttgaagtccaaaggagggtcttggttgggtggattgagctgctggtttat 70
          |||||||||||||||||||||  |||| |||| | ||||| |||||||||||||   |||
Sbjct: 10 gtggagctccttgaagtccaatagaggatctt-gatgggtagattgagctgctgagctat 68

                           
Query: 71 ggattccactgccctat 87
          |||| |||| |||||||
Sbjct: 69 ggatcccacagccctat 85



 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 192 tttggattgaagggagctctacatct 217
           ||||||||||||||||||||||||||
Sbjct: 162 tttggattgaagggagctctacatct 187



 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 136 ggataggcttgtggtttgcataactcaggagct 168
           |||||||||||||| ||||||| ||||||||||
Sbjct: 105 ggataggcttgtggcttgcatatctcaggagct 137




>RF00638;MIR159;AP008207.1/17678032-17678305 39947:Oryza sativa
           Japonica Group
          Length = 274

 Score = 58.0 bits (29), Expect = 5e-08
 Identities = 71/85 (83%)
 Strand = Plus / Plus

                                                                       
Query: 133 ttgggataggcttgtggtttgcataactcaggagctgcatcaacccagcctgacctttat 192
           ||||||||||||| ||| ||||||  | ||||||||||||||||||  | ||  |  | |
Sbjct: 183 ttgggataggcttatggcttgcatgccccaggagctgcatcaaccctacatggaccctct 242

                                    
Query: 193 ttggattgaagggagctctacatct 217
           ||||||||||||||||||| |||||
Sbjct: 243 ttggattgaagggagctctgcatct 267




>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
           cress)
          Length = 204

 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 192 tttggattgaagggagctctacatct 217
           ||||||||||||||||||||||||||
Sbjct: 172 tttggattgaagggagctctacatct 197




>RF00638;MIR159;EU869041.1/17-203 39947:Oryza sativa Japonica Group
          Length = 187

 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 69/82 (84%), Gaps = 1/82 (1%)
 Strand = Plus / Plus

                                                                       
Query: 137 gataggcttgtggtttgcataactcaggagctgcatcaac-ccagcctgacctttatttg 195
           |||||||||||||||||||| ||  |||||| | |||||| ||   ||||||  | ||||
Sbjct: 99  gataggcttgtggtttgcatgaccaaggagccgaatcaactccttgctgaccactctttg 158

                                 
Query: 196 gattgaagggagctctacatct 217
           |||||||||||||||| |||||
Sbjct: 159 gattgaagggagctctgcatct 180




>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
          Length = 200

 Score = 48.1 bits (24), Expect = 5e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 192 tttggattgaagggagctctacat 215
           ||||||||||||||||||||||||
Sbjct: 168 tttggattgaagggagctctacat 191




>RF00638;MIR159;AP009362.1/69443-69635 4081:Solanum lycopersicum
          Length = 193

 Score = 48.1 bits (24), Expect = 5e-05
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 137 gataggcttgtggtttgcataactcaggagctgcat 172
           |||||| ||||||||||||||  |||||||||||||
Sbjct: 106 gataggtttgtggtttgcatatatcaggagctgcat 141




>RF00638;MIR159;EU955086.1/295-527 4577:Zea mays
          Length = 233

 Score = 48.1 bits (24), Expect = 5e-05
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                   
Query: 132 tttgggataggcttgtggtttgcataactcaggagctgca 171
           |||| |||||||||||||||||||| ||  ||||||||||
Sbjct: 140 tttgagataggcttgtggtttgcatgaccgaggagctgca 179




>RF00638;MIR159;ABXC01001787.1/21430-21187 4558:Sorghum bicolor
           (sorghum)
          Length = 244

 Score = 48.1 bits (24), Expect = 5e-05
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                   
Query: 132 tttgggataggcttgtggtttgcataactcaggagctgca 171
           |||| |||||||||||||||||||| ||  ||||||||||
Sbjct: 151 tttgagataggcttgtggtttgcatgaccgaggagctgca 190




>RF00638;MIR159;AC034107.5/26716-26923 3702:Arabidopsis thaliana
           (thale cress)
          Length = 208

 Score = 44.1 bits (22), Expect = 8e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 192 tttggattgaagggagctctacatct 217
           |||||||||||||||||||| |||||
Sbjct: 176 tttggattgaagggagctcttcatct 201




>RF00638;MIR159;AY551213.1/14-203 4530:Oryza sativa (rice)
          Length = 190

 Score = 44.1 bits (22), Expect = 8e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 193 ttggattgaagggagctctaca 214
           ||||||||||||||||||||||
Sbjct: 159 ttggattgaagggagctctaca 180