miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00689;MIR390;AC189355.2/75830-75939 51351:Brassica rapa subsp.
pekinensis
Length = 110
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 15 agctctaaagctcaggagggatagcgcc 42
|||| |||||||||||||||||||||||
Sbjct: 8 agctgtaaagctcaggagggatagcgcc 35
>RF00689;MIR390;AB025632.1/22985-23104 3702:Arabidopsis thaliana
(thale cress)
Length = 120
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 15 agctctaaagctcaggagggatagcgcc 42
|||| |||||||||||||||||||||||
Sbjct: 8 agctataaagctcaggagggatagcgcc 35
>RF00689;MIR390;ABIM01001395.1/10315-10183 3649:Carica papaya
(papaya)
Length = 133
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 taaagctcaggagggatagcgcc 42
|||||||||||||||||||||||
Sbjct: 13 taaagctcaggagggatagcgcc 35
>RF00689;MIR390;AC189543.2/98818-98914 51351:Brassica rapa subsp.
pekinensis
Length = 97
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 taaagctcaggagggatagcgcc 42
|||||||||||||||||||||||
Sbjct: 13 taaagctcaggagggatagcgcc 35
>RF00689;MIR390;FM163955.1/147-245 3702:Arabidopsis thaliana
(thale cress)
Length = 99
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 taaagctcaggagggatagcgcc 42
|||||||||||||||||||||||
Sbjct: 13 taaagctcaggagggatagcgcc 35
>RF00689;MIR390;AC235430.1/64014-64117 3847:Glycine max (soybean)
Length = 104
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 taaagctcaggagggatagcgcc 42
|||||||||||||||||||||||
Sbjct: 13 taaagctcaggagggatagcgcc 35
>RF00689;MIR390;AAAA02011305.1/16847-16930 39946:Oryza sativa
Indica Group
Length = 84
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 aagctcaggagggatagcgcct 43
||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgcct 36
