miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;AAAA02017707.1/12909-13018 39946:Oryza sativa
Indica Group
Length = 110
Score = 69.9 bits (35), Expect = 9e-12
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 103 tagccgtgcgtgccaaaggagaattgccctgcgattcac 141
||||| |||||||||||||||||||||||||||||||||
Sbjct: 70 tagccatgcgtgccaaaggagaattgccctgcgattcac 108
>RF00445;mir-399;ABXC01002232.1/126477-126594 4558:Sorghum bicolor
(sorghum)
Length = 118
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 109 tgcgtgccaaaggagaattgccctgcgattc 139
|||||||||||||||||||||||||||||||
Sbjct: 84 tgcgtgccaaaggagaattgccctgcgattc 114
>RF00445;mir-399;ABXC01006255.1/18853-18743 4558:Sorghum bicolor
(sorghum)
Length = 111
Score = 60.0 bits (30), Expect = 8e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 110 gcgtgccaaaggagaattgccctgcgattc 139
||||||||||||||||||||||||||||||
Sbjct: 78 gcgtgccaaaggagaattgccctgcgattc 107
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 catgaattacagggtatatctcctttggcac 31
|||||||||||||||| ||||||||||||||
Sbjct: 2 catgaattacagggtacatctcctttggcac 32
>RF00445;mir-399;AACV01002284.1/925-1073 39947:Oryza sativa Japonica
Group
Length = 149
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 111 cgtgccaaaggagaattgccctgcgatt 138
||||||||||||||||||||||||||||
Sbjct: 117 cgtgccaaaggagaattgccctgcgatt 144
>RF00445;mir-399;AACV01003693.1/42206-42110 39947:Oryza sativa
Japonica Group
Length = 97
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 111 cgtgccaaaggagaattgccctgcgattca 140
|||||||||||||||||||||||| |||||
Sbjct: 65 cgtgccaaaggagaattgccctgccattca 94
>RF00445;mir-399;AARH01002114.1/15624-15718 3694:Populus trichocarpa
Length = 95
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 113 tgccaaaggagaattgccctgcgattca 140
|||||||||||||||||||||| |||||
Sbjct: 65 tgccaaaggagaattgccctgccattca 92
>RF00445;mir-399;AAAA02019779.1/19949-19837 39946:Oryza sativa
Indica Group
Length = 113
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 113 tgccaaaggagaattgccctgcgattca 140
|||||||||||||||||||||| |||||
Sbjct: 83 tgccaaaggagaattgccctgccattca 110
>RF00445;mir-399;ABIM01002717.1/30662-30788 3649:Carica papaya
(papaya)
Length = 127
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 113 tgccaaaggagaattgccctgcgattc 139
|||||||||||||||||||||| ||||
Sbjct: 97 tgccaaaggagaattgccctgccattc 123
>RF00445;mir-399;AARH01002119.1/15983-15882 3694:Populus trichocarpa
Length = 102
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 113 tgccaaaggagaattgccctgcgattc 139
|||||||||||||||||||||| ||||
Sbjct: 72 tgccaaaggagaattgccctgccattc 98
>RF00445;mir-399;AM467681.2/18299-18208 29760:Vitis vinifera
Length = 92
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 113 tgccaaaggagaattgccctgcgattc 139
|||||||||||||||||||||| ||||
Sbjct: 62 tgccaaaggagaattgccctgccattc 88
>RF00445;mir-399;ABXC01002522.1/3232-3121 4558:Sorghum bicolor
(sorghum)
Length = 112
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 113 tgccaaaggagaattgccctgcgattc 139
|||||||||||||||||||||| ||||
Sbjct: 82 tgccaaaggagaattgccctgccattc 108
>RF00445;mir-399;ABXC01006771.1/37202-37314 4558:Sorghum bicolor
(sorghum)
Length = 113
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 113 tgccaaaggagaattgccctgcgattc 139
|||||||||||||||||||||| ||||
Sbjct: 83 tgccaaaggagaattgccctgccattc 109
