miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AACV01007836.1/7963-7867 39947:Oryza sativa
          Japonica Group
          Length = 97

 Score = 48.1 bits (24), Expect = 6e-05
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                  
Query: 10 atctactccctccgtccctaaata 33
          ||||||||||||||||||||||||
Sbjct: 96 atctactccctccgtccctaaata 73




>RF00906;MIR1122;AACV01017146.1/25916-25760 39947:Oryza sativa
           Japonica Group
          Length = 157

 Score = 48.1 bits (24), Expect = 6e-05
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 10  atctactccctccgtccctaaata 33
           ||||||||||||||||||||||||
Sbjct: 156 atctactccctccgtccctaaata 133




>RF01058;MIR806;CR855092.1/95501-95738 4530:Oryza sativa (rice)
          Length = 238

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 13 tactccctccgtccctaaataac 35
          |||||||||||||||||||||||
Sbjct: 2  tactccctccgtccctaaataac 24




>RF00906;MIR1122;AF488415.1/78603-78755 4568:Triticum monococcum
          Length = 153

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 13  tactccctccgtccctaaataactgtc 39
           ||||||||||||||| |||||||||||
Sbjct: 149 tactccctccgtcccaaaataactgtc 123




>RF00906;MIR1122;AK249560.1/988-1092 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 105

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 13  tactccctccgtccctaaataactgtc 39
           ||||||||||||||| |||||||||||
Sbjct: 101 tactccctccgtcccaaaataactgtc 75




>RF00906;MIR1122;EU282770.1/593-711 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 119

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 13  tactccctccgtccctaaataactgtc 39
           ||||||||||||||| |||||||||||
Sbjct: 115 tactccctccgtcccaaaataactgtc 89




>RF00906;MIR1122;AY133251.1/901-1005 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 105

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 13  tactccctccgtccctaaataactgtc 39
           ||||||||||||||| |||||||||||
Sbjct: 101 tactccctccgtcccaaaataactgtc 75




>RF00906;MIR1122;DQ445238.1/5626-5730 112509:Hordeum vulgare
          subsp. vulgare (domesticated barley)
          Length = 105

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 13 tactccctccgtccctaaataactgtc 39
          ||||||||||||||| |||||||||||
Sbjct: 5  tactccctccgtcccaaaataactgtc 31



 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 13  tactccctccgtccctaaataactgtc 39
           ||||||||||||||| |||||||||||
Sbjct: 101 tactccctccgtcccaaaataactgtc 75




>RF00906;MIR1122;EU593539.1/914-1018 4513:Hordeum vulgare
          Length = 105

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 13 tactccctccgtccctaaataactgtc 39
          ||||||||||||||| |||||||||||
Sbjct: 5  tactccctccgtcccaaaataactgtc 31



 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 13  tactccctccgtccctaaataactgtc 39
           ||||||||||||||| |||||||||||
Sbjct: 101 tactccctccgtcccaaaataactgtc 75




>RF00906;MIR1122;AAAA02006463.1/56610-56765 39946:Oryza sativa
          Indica Group
          Length = 156

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 11 tctactccctccgtccctaaata 33
          |||||||||||||||||||||||
Sbjct: 3  tctactccctccgtccctaaata 25




>RF00906;MIR1122;AACV01005168.1/9233-9388 39947:Oryza sativa
          Japonica Group
          Length = 156

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 11 tctactccctccgtccctaaata 33
          |||||||||||||||||||||||
Sbjct: 3  tctactccctccgtccctaaata 25




>RF00906;MIR1122;AP004178.3/74526-74681 39947:Oryza sativa
          Japonica Group
          Length = 156

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 11 tctactccctccgtccctaaata 33
          |||||||||||||||||||||||
Sbjct: 3  tctactccctccgtccctaaata 25




>RF01058;MIR806;AAAA02017693.1/1498-1741 39946:Oryza sativa Indica
           Group
          Length = 244

 Score = 44.1 bits (22), Expect = 0.001
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 227 cacttaaaaagggacagagggagtag 252
           ||||||||||||||| ||||||||||
Sbjct: 219 cacttaaaaagggacggagggagtag 244




>RF01058;MIR806;AAAA02004732.1/1025-786 39946:Oryza sativa Indica
          Group
          Length = 240

 Score = 44.1 bits (22), Expect = 0.001
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 12 ctactccctccgtccctaaata 33
          ||||||||||||||||||||||
Sbjct: 1  ctactccctccgtccctaaata 22




>RF01058;MIR806;AAAA02029671.1/2843-3067 39946:Oryza sativa Indica
          Group
          Length = 225

 Score = 44.1 bits (22), Expect = 0.001
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 12 ctactccctccgtccctaaata 33
          ||||||||||||||||||||||
Sbjct: 1  ctactccctccgtccctaaata 22




>RF01058;MIR806;AAAA02009166.1/12809-12572 39946:Oryza sativa Indica
           Group
          Length = 238

 Score = 44.1 bits (22), Expect = 0.001
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 12  ctactccctccgtccctaaata 33
           ||||||||||||||||||||||
Sbjct: 238 ctactccctccgtccctaaata 217




>RF01058;MIR806;AACV01018714.1/67447-67209 39947:Oryza sativa
           Japonica Group
          Length = 239

 Score = 44.1 bits (22), Expect = 0.001
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 12  ctactccctccgtccctaaata 33
           ||||||||||||||||||||||
Sbjct: 239 ctactccctccgtccctaaata 218




>RF01058;MIR806;AACV01003404.1/46592-46354 39947:Oryza sativa
          Japonica Group
          Length = 239

 Score = 44.1 bits (22), Expect = 0.001
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 12 ctactccctccgtccctaaata 33
          ||||||||||||||||||||||
Sbjct: 1  ctactccctccgtccctaaata 22




>RF00906;MIR1122;EU282251.1/1314-1209 52152:Elymus repens
          Length = 106

 Score = 44.1 bits (22), Expect = 0.001
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 12 ctactccctccgtccctaaataactgtcgc 41
          |||||||||||||||| |||||| ||||||
Sbjct: 4  ctactccctccgtcccaaaataagtgtcgc 33



 Score = 44.1 bits (22), Expect = 0.001
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 13  tactccctccgtccctaaataactgtcgct 42
           ||||||||||||||| |||||| |||||||
Sbjct: 102 tactccctccgtcccaaaataagtgtcgct 73




>RF00906;MIR1122;AAAA02000966.1/612-453 39946:Oryza sativa Indica
           Group
          Length = 160

 Score = 44.1 bits (22), Expect = 0.001
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 11  tctactccctccgtccctaaataact 36
           ||||||||||||||||| ||||||||
Sbjct: 158 tctactccctccgtcccaaaataact 133




>RF00906;MIR1122;AC135958.2/60124-60233 39947:Oryza sativa Japonica
           Group
          Length = 110

 Score = 44.1 bits (22), Expect = 0.001
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 12  ctactccctccgtccctaaata 33
           ||||||||||||||||||||||
Sbjct: 107 ctactccctccgtccctaaata 86




>RF00906;MIR1122;AC092779.5/114881-115036 39947:Oryza sativa
           Japonica Group
          Length = 156

 Score = 44.1 bits (22), Expect = 0.001
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 12  ctactccctccgtccctaaata 33
           ||||||||||||||||||||||
Sbjct: 153 ctactccctccgtccctaaata 132




>RF00906;MIR1122;AAAA02028211.1/1243-1359 39946:Oryza sativa
          Indica Group
          Length = 117

 Score = 44.1 bits (22), Expect = 0.001
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 12 ctactccctccgtccctaaata 33
          ||||||||||||||||||||||
Sbjct: 4  ctactccctccgtccctaaata 25




>RF00906;MIR1122;AK288631.1/1276-1390 39947:Oryza sativa Japonica
           Group
          Length = 115

 Score = 44.1 bits (22), Expect = 0.001
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 12  ctactccctccgtccctaaata 33
           ||||||||||||||||||||||
Sbjct: 112 ctactccctccgtccctaaata 91




>RF00906;MIR1122;AC136448.2/118247-118097 39947:Oryza sativa
          Japonica Group
          Length = 151

 Score = 44.1 bits (22), Expect = 0.001
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 12 ctactccctccgtccctaaata 33
          ||||||||||||||||||||||
Sbjct: 4  ctactccctccgtccctaaata 25




>RF00906;MIR1122;AACV01023423.1/18495-18379 39947:Oryza sativa
          Japonica Group
          Length = 117

 Score = 44.1 bits (22), Expect = 0.001
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 12 ctactccctccgtccctaaata 33
          ||||||||||||||||||||||
Sbjct: 4  ctactccctccgtccctaaata 25




>RF00906;MIR1122;AP004994.2/69469-69314 39947:Oryza sativa
          Japonica Group
          Length = 156

 Score = 44.1 bits (22), Expect = 0.001
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 12 ctactccctccgtccctaaata 33
          ||||||||||||||||||||||
Sbjct: 4  ctactccctccgtccctaaata 25




>RF00906;MIR1122;AC120985.3/48011-47950 39947:Oryza sativa
          Japonica Group
          Length = 62

 Score = 44.1 bits (22), Expect = 0.001
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 12 ctactccctccgtccctaaata 33
          ||||||||||||||||||||||
Sbjct: 59 ctactccctccgtccctaaata 38




>RF00906;MIR1122;AAAA02018670.1/1486-1331 39946:Oryza sativa
          Indica Group
          Length = 156

 Score = 44.1 bits (22), Expect = 0.001
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 12 ctactccctccgtccctaaata 33
          ||||||||||||||||||||||
Sbjct: 4  ctactccctccgtccctaaata 25




>RF00906;MIR1122;AAAA02019543.1/35421-35577 39946:Oryza sativa
           Indica Group
          Length = 157

 Score = 44.1 bits (22), Expect = 0.001
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 12  ctactccctccgtccctaaata 33
           ||||||||||||||||||||||
Sbjct: 154 ctactccctccgtccctaaata 133




>RF00906;MIR1122;AAAA02021208.1/38295-38158 39946:Oryza sativa
           Indica Group
          Length = 138

 Score = 44.1 bits (22), Expect = 0.001
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 13  tactccctccgtccctaaataa 34
           ||||||||||||||||||||||
Sbjct: 134 tactccctccgtccctaaataa 113




>RF00906;MIR1122;AACV01012007.1/47065-46909 39947:Oryza sativa
          Japonica Group
          Length = 157

 Score = 44.1 bits (22), Expect = 0.001
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 12 ctactccctccgtccctaaata 33
          ||||||||||||||||||||||
Sbjct: 4  ctactccctccgtccctaaata 25




>RF00906;MIR1122;AP004736.2/17089-17220 39947:Oryza sativa Japonica
           Group
          Length = 132

 Score = 44.1 bits (22), Expect = 0.001
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 12  ctactccctccgtccctaaata 33
           ||||||||||||||||||||||
Sbjct: 129 ctactccctccgtccctaaata 108