miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;ABXC01003678.1/89613-89769 4558:Sorghum bicolor
(sorghum)
Length = 157
Score = 107 bits (54), Expect = 6e-23
Identities = 88/98 (89%), Gaps = 1/98 (1%)
Strand = Plus / Minus
Query: 77 tttgctatgcatctagatataacatatgtctagatacatagcaaaatatatgaatctaaa 136
||||||||||| ||||||| | |||||||||||||||||||||||| |||||| | |||
Sbjct: 101 tttgctatgcacctagataaataatatgtctagatacatagcaaaatgtatgaa-ccaaa 43
Query: 137 aaagtcaaaacgacctatattttggaacggagggagta 174
||| |||||||||| |||| ||||||||||||||||||
Sbjct: 42 aaactcaaaacgacttataatttggaacggagggagta 5
Score = 71.9 bits (36), Expect = 3e-12
Identities = 122/148 (82%), Gaps = 2/148 (1%)
Strand = Plus / Plus
Query: 24 tactccctccgttccaaaatgtagatcgttttgacttttctagattcatagtgtttgcta 83
|||||||||||||||||| | || ||||||||| |||| | | |||||| |||||||
Sbjct: 5 tactccctccgttccaaattataagtcgttttgagttttttgg-ttcatacattttgcta 63
Query: 84 tgcatctagatataacatatgtctagatacatagcaaaatatatgaatctaaaaaagtca 143
|| ||||||| ||| || | ||||| | ||||||||||| ||| ||| ||||||||||
Sbjct: 64 tgtatctagacatattatttatctaggtgcatagcaaaatggatgtatc-aaaaaagtca 122
Query: 144 aaacgacctatattttggaacggaggga 171
|| |||| |||| |||||||||||||||
Sbjct: 123 aagcgacttataatttggaacggaggga 150
>RF00906;MIR1122;ABXC01006544.1/387099-387256 4558:Sorghum bicolor
(sorghum)
Length = 158
Score = 91.7 bits (46), Expect = 3e-18
Identities = 86/98 (87%), Gaps = 1/98 (1%)
Strand = Plus / Plus
Query: 77 tttgctatgcatctagatataacatatgtctagatacatagcaaaatatatgaatctaaa 136
|||| ||||| ||||||||||||||||| |||||| ||||||||||| ||| | | |||
Sbjct: 58 tttgttatgcgtctagatataacatatggctagatgcatagcaaaatgaatgta-ccaaa 116
Query: 137 aaagtcaaaacgacctatattttggaacggagggagta 174
||||||||| |||| |||| ||||||||||||||||||
Sbjct: 117 aaagtcaaagcgacttataatttggaacggagggagta 154
>RF00906;MIR1122;ABXC01004969.1/59800-59956 4558:Sorghum bicolor
(sorghum)
Length = 157
Score = 91.7 bits (46), Expect = 3e-18
Identities = 86/98 (87%), Gaps = 1/98 (1%)
Strand = Plus / Plus
Query: 77 tttgctatgcatctagatataacatatgtctagatacatagcaaaatatatgaatctaaa 136
||||||||| ||||| ||||||||||||||||||| ||||||||||| |||| | | |||
Sbjct: 57 tttgctatgtatctacatataacatatgtctagattcatagcaaaatctatgta-ccaaa 115
Query: 137 aaagtcaaaacgacctatattttggaacggagggagta 174
||||||||| ||| |||| |||||||| |||||||||
Sbjct: 116 aaagtcaaagtgacttataatttggaactgagggagta 153
Score = 44.1 bits (22), Expect = 7e-04
Identities = 80/98 (81%), Gaps = 1/98 (1%)
Strand = Plus / Minus
Query: 77 tttgctatgcatctagatataacatatgtctagatacatagcaaaatatatgaatctaaa 136
||||||||| ||||||| ||| ||| | ||||||||||||||||| ||| | | |||
Sbjct: 101 tttgctatgaatctagacatatgttatatgtagatacatagcaaaattgatgta-ccaaa 43
Query: 137 aaagtcaaaacgacctatattttggaacggagggagta 174
|||||||| |||| |||| |||||||| |||| ||||
Sbjct: 42 caagtcaaagcgacttataatttggaactgaggaagta 5
>RF00906;MIR1122;ABXC01002968.1/30248-30403 4558:Sorghum bicolor
(sorghum)
Length = 156
Score = 85.7 bits (43), Expect = 2e-16
Identities = 126/153 (82%), Gaps = 3/153 (1%)
Strand = Plus / Plus
Query: 22 gctactccctccgttccaaaatgtagatcgttttgacttttctagattcatagtgtttgc 81
|||||||||||||||||||| | || |||||| |||||||| ||||||| ||||
Sbjct: 3 gctactccctccgttccaaattataa---gttttggcttttctatattcataacttttgg 59
Query: 82 tatgcatctagatataacatatgtctagatacatagcaaaatatatgaatctaaaaaagt 141
|||||||||||||||| ||||||||||| ||||| ||| |||||||||| ||| |
Sbjct: 60 tatgcatctagatatatgttatgtctagattcatagtcaaagctatgaatctagaaatgc 119
Query: 142 caaaacgacctatattttggaacggagggagta 174
||||||| | |||| ||||| ||||||||||||
Sbjct: 120 caaaacgtcttatagtttgggacggagggagta 152
Score = 81.8 bits (41), Expect = 3e-15
Identities = 124/151 (82%), Gaps = 3/151 (1%)
Strand = Plus / Minus
Query: 24 tactccctccgttccaaaatgtagatcgttttgacttttctagattcatagtgtttgcta 83
|||||||||||| ||||| | || ||||||| | ||||||||||||||| || |||
Sbjct: 152 tactccctccgtcccaaactataagacgttttggcatttctagattcatagctttgacta 93
Query: 84 tgcatctagatataacatatgtctagatacatagcaaaatatatgaatctaaaaaagtca 143
|| ||||||| ||||||||| ||||||| |||| ||||| ||||||| || ||||| ||
Sbjct: 92 tgaatctagacataacatatatctagatgcataccaaaagttatgaatatagaaaagcca 33
Query: 144 aaacgacctatattttggaacggagggagta 174
|| || |||| ||||||||||||||||||
Sbjct: 32 aa---acttataatttggaacggagggagta 5
>RF00906;MIR1122;ABXC01000646.1/88636-88479 4558:Sorghum bicolor
(sorghum)
Length = 158
Score = 85.7 bits (43), Expect = 2e-16
Identities = 84/95 (88%), Gaps = 2/95 (2%)
Strand = Plus / Minus
Query: 81 ctatgcatctagatataaca-tatgtctagatacatagcaaaatatatgaatctaaaaaa 139
|||||||||||||||||| | ||||||||||||||||||||||| || || | ||||||
Sbjct: 98 ctatgcatctagatataataatatgtctagatacatagcaaaatggataaacc-aaaaaa 40
Query: 140 gtcaaaacgacctatattttggaacggagggagta 174
|||||| |||| |||| ||||||||||| ||||||
Sbjct: 39 gtcaaagcgacttataatttggaacggatggagta 5
Score = 58.0 bits (29), Expect = 5e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 134 aaaaaagtcaaaacgacctatattttggaacggagggagta 174
|||||||||||| |||| |||| ||||||||||||||||||
Sbjct: 114 aaaaaagtcaaagcgacttataatttggaacggagggagta 154
>RF00906;MIR1122;ABXC01002366.1/89795-89952 4558:Sorghum bicolor
(sorghum)
Length = 158
Score = 83.8 bits (42), Expect = 8e-16
Identities = 85/98 (86%), Gaps = 1/98 (1%)
Strand = Plus / Minus
Query: 77 tttgctatgcatctagatataacatatgtctagatacatagcaaaatatatgaatctaaa 136
||||||||||||||||||| | ||||||||||||||||||| |||| ||||| | |||
Sbjct: 101 tttgctatgcatctagataaataatatgtctagatacatagccaaatggatgaa-ccaaa 43
Query: 137 aaagtcaaaacgacctatattttggaacggagggagta 174
|||||||||| || |||| |||||||| |||||||||
Sbjct: 42 gaagtcaaaacaacttataatttggaacagagggagta 5
Score = 54.0 bits (27), Expect = 7e-07
Identities = 78/95 (82%)
Strand = Plus / Plus
Query: 80 gctatgcatctagatataacatatgtctagatacatagcaaaatatatgaatctaaaaaa 139
|||||| ||||||| ||| || | ||||||| ||||||||||| ||| | | ||||||
Sbjct: 60 gctatgtatctagacatattatttatctagatgcatagcaaaatgaatgtaccaaaaaaa 119
Query: 140 gtcaaaacgacctatattttggaacggagggagta 174
|| ||| ||| |||| ||||||||||||||||||
Sbjct: 120 gttaaagtgacttataatttggaacggagggagta 154
>RF00906;MIR1122;ABXC01000115.1/34151-34263 4558:Sorghum bicolor
(sorghum)
Length = 113
Score = 77.8 bits (39), Expect = 5e-14
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 77 tttgctatgcatctagatataacatatgtctagatacatagcaaaat 123
||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 35 tttgctatgtacctagatataacatatgtctagatacatagcaaaat 81
>RF00906;MIR1122;ABXC01002946.1/15272-15115 4558:Sorghum bicolor
(sorghum)
Length = 158
Score = 69.9 bits (35), Expect = 1e-11
Identities = 85/99 (85%), Gaps = 2/99 (2%)
Strand = Plus / Plus
Query: 77 tttgctatgcatctagatataaca-tatgtctagatacatagcaaaatatatgaatctaa 135
|||||||||||| |||| |||| | |||||||||||||||| ||||||| |||||| |
Sbjct: 57 tttgctatgcatttagacataataatatgtctagatacataacaaaatagatgaat-aac 115
Query: 136 aaaagtcaaaacgacctatattttggaacggagggagta 174
||||| |||| |||| |||| ||||||||||| ||||||
Sbjct: 116 aaaagacaaagcgacttataatttggaacggaaggagta 154
>RF00906;MIR1122;ABXC01002915.1/67233-67385 4558:Sorghum bicolor
(sorghum)
Length = 153
Score = 65.9 bits (33), Expect = 2e-10
Identities = 96/117 (82%)
Strand = Plus / Minus
Query: 59 ttttctagattcatagtgtttgctatgcatctagatataacatatgtctagatacatagc 118
|||| ||||| |||||| ||||||||||| |||||||| |||||||| || |||||
Sbjct: 120 ttttttagatacatagtttttgctatgcacttagatatacactatgtctaaatgcatagt 61
Query: 119 aaaatatatgaatctaaaaaagtcaaaacgacctatattttggaacggagggagtat 175
|||| ||| ||||| ||||||||||| | | |||| |||||| ||||||||||||
Sbjct: 60 aaaagcaatgtatctagaaaagtcaaaatgtcttataatttggagcggagggagtat 4
>RF00906;MIR1122;ABXC01000784.1/46511-46398 4558:Sorghum bicolor
(sorghum)
Length = 114
Score = 63.9 bits (32), Expect = 8e-10
Identities = 45/48 (93%), Gaps = 1/48 (2%)
Strand = Plus / Minus
Query: 77 tttgctatgcatctagatataacat-atgtctagatacatagcaaaat 123
||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 80 tttgctatgtatctagatataacaacatgtctagatacatagcaaaat 33
>RF00906;MIR1122;ABXC01006912.1/173040-173190 4558:Sorghum bicolor
(sorghum)
Length = 151
Score = 61.9 bits (31), Expect = 3e-09
Identities = 65/75 (86%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 100 atatgtctagatacatagcaaaatatatgaatctaaaaaagtcaaaacgacctatatttt 159
|||| ||||||| ||||||||||| ||| | |||||||||||||| |||| |||| |||
Sbjct: 78 atatatctagatgcatagcaaaatggatgta-ctaaaaaagtcaaagcgacttataattt 20
Query: 160 ggaacggagggagta 174
||||||||| |||||
Sbjct: 19 ggaacggagagagta 5
>RF00906;MIR1122;ABXC01003117.1/17769-17632 4558:Sorghum bicolor
(sorghum)
Length = 138
Score = 60.0 bits (30), Expect = 1e-08
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 134 aaaaaagtcaaaacgacctatattttggaacggagggagtat 175
|||||||||||| |||| |||| |||||||||||||||||||
Sbjct: 45 aaaaaagtcaaagcgacttataatttggaacggagggagtat 4
>RF00906;MIR1122;ABXC01002751.1/4300-4149 4558:Sorghum bicolor
(sorghum)
Length = 152
Score = 60.0 bits (30), Expect = 1e-08
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 134 aaaaaagtcaaaacgacctatattttggaacggagggagtat 175
|||||||||||| |||| |||| |||||||||||||||||||
Sbjct: 45 aaaaaagtcaaagcgacttataatttggaacggagggagtat 4
Score = 58.0 bits (29), Expect = 5e-08
Identities = 54/61 (88%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 114 atagcaaaatatatgaatctaaaaaagtcaaaacgacctatattttggaacggagggagt 173
||||||||||| ||||| | |||||||||||| || | |||| |||||||||||||||||
Sbjct: 89 atagcaaaatagatgaacc-aaaaaagtcaaagcggcttataatttggaacggagggagt 147
Query: 174 a 174
|
Sbjct: 148 a 148
>RF00906;MIR1122;ABXC01002486.1/98513-98357 4558:Sorghum bicolor
(sorghum)
Length = 157
Score = 58.0 bits (29), Expect = 5e-08
Identities = 75/89 (84%), Gaps = 1/89 (1%)
Strand = Plus / Minus
Query: 86 catctagatataacatatgtctagatacatagcaaaatatatgaatctaaaaaagtcaaa 145
||||||||||| | ||||||||||||||||||||| | |||| | | |||| ||||||
Sbjct: 92 catctagatatgatgtatgtctagatacatagcaaattctatgta-ccaaaacagtcaat 34
Query: 146 acgacctatattttggaacggagggagta 174
|||| |||| ||||||||| ||||||||
Sbjct: 33 gcgacttataatttggaacgaagggagta 5
>RF00906;MIR1122;ABXC01001510.1/32715-32871 4558:Sorghum bicolor
(sorghum)
Length = 157
Score = 56.0 bits (28), Expect = 2e-07
Identities = 62/72 (86%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 103 tgtctagatacatagcaaaatatatgaatctaaaaaagtcaaaacgacctatattttgga 162
||||||||||||||| |||| | ||| ||||| ||| | ||||||| | |||| ||||||
Sbjct: 83 tgtctagatacatagtaaaaaaaatgtatctagaaa-gccaaaacgtcttatagtttgga 141
Query: 163 acggagggagta 174
||||||||||||
Sbjct: 142 acggagggagta 153
>RF00906;MIR1122;ABXC01006108.1/73971-74122 4558:Sorghum bicolor
(sorghum)
Length = 152
Score = 54.0 bits (27), Expect = 7e-07
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 125 tatgaatctaaaaaagtcaaaacgacctatattttggaacggaggga 171
|||| ||||||||||| ||||||||| | |||||||||||||||||
Sbjct: 99 tatgtatctaaaaaagccaaaacgacttgcattttggaacggaggga 145
Score = 48.1 bits (24), Expect = 5e-05
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 27 tccctccgttccaaaatgtagatcgttttgacttttctagattcatag 74
|||||||||||||||||| | |||||||| ||||| ||||| |||||
Sbjct: 145 tccctccgttccaaaatgcaagtcgttttggcttttttagatacatag 98
Score = 44.1 bits (22), Expect = 7e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 23 ctactccctccgttccaaaatgtagatcgttttg 56
||||||||||||||||||| |||| ||||||||
Sbjct: 4 ctactccctccgttccaaattgtaagtcgttttg 37
>RF00906;MIR1122;ABXC01006238.1/21919-22080 4558:Sorghum bicolor
(sorghum)
Length = 162
Score = 54.0 bits (27), Expect = 7e-07
Identities = 124/154 (80%), Gaps = 3/154 (1%)
Strand = Plus / Minus
Query: 24 tactccctccgttccaaaatgtagatcgttttgacttttctagattcatagtgtttgcta 83
|||||||||| ||||||| | || ||||||| |||||||||||||| | |||||||
Sbjct: 158 tactccctccattccaaattataagacgttttgggttttctagattcatggcttttgcta 99
Query: 84 tgcatctagatataacatatgtctagatacatagca--aaatat-atgaatctaaaaaag 140
|||| |||||| | ||||||||||| ||||| | ||| || ||| ||||| |||||
Sbjct: 98 tgcacttagatacacgctatgtctagatgcatagtagtaaaaataatgtatctagaaaag 39
Query: 141 tcaaaacgacctatattttggaacggagggagta 174
||||||| | |||| | ||||||||||||||||
Sbjct: 38 ccaaaacgtcttataatgtggaacggagggagta 5
Score = 46.1 bits (23), Expect = 2e-04
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 113 catagcaaaatatatgaatctaaaaaagtcaaaacgacctatattttggaacggagggag 172
|||||||||| ||||||||| |||| ||||||| | |||| ||||||| ||||||||
Sbjct: 97 catagcaaaagccatgaatctagaaaacccaaaacgtcttataatttggaatggagggag 156
Query: 173 tat 175
|||
Sbjct: 157 tat 159
>RF00906;MIR1122;CU302289.7/103800-103679 3880:Medicago truncatula
(barrel medic)
Length = 122
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 152 tatattttggaacggagggagtatat 177
||||||||||||||||||||||||||
Sbjct: 96 tatattttggaacggagggagtatat 121
>RF00906;MIR1122;ABXC01006180.1/72632-72485 4558:Sorghum bicolor
(sorghum)
Length = 148
Score = 52.0 bits (26), Expect = 3e-06
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 101 tatgtctagatacatagcaaaatatatgaatctaaaaaagtcaaaacgacctatattttg 160
|||||||| |||||||| ||||| ||| ||||| |||| ||||| | | |||| ||||
Sbjct: 71 tatgtctaaatacatagtaaaatcaatgcatctagaaaaaccaaaatgtcttataatttg 130
Query: 161 gaacggagggagta 174
||||||||||||||
Sbjct: 131 gaacggagggagta 144
Score = 48.1 bits (24), Expect = 5e-05
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 107 tagatacatagcaaaatatatgaatctaaaaaagtcaaaacgacctatattttggaacgg 166
||||||| ||||||||| |||| ||||| ||| | |||||| | || | ||||||||||
Sbjct: 72 tagatacgtagcaaaatctatgtatctagaaatgccaaaacaccttacaatttggaacgg 13
Query: 167 agggagta 174
||||||||
Sbjct: 12 agggagta 5
>RF00906;MIR1122;ABXC01000087.1/99966-100106 4558:Sorghum bicolor
(sorghum)
Length = 141
Score = 52.0 bits (26), Expect = 3e-06
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 130 atctaaaaaagtcaaaacgacctatattttggaacggagggagtat 175
||||| ||||| || |||||| |||| |||||||||||||||||||
Sbjct: 49 atctagaaaagccagaacgacttataatttggaacggagggagtat 4
>RF00906;MIR1122;ABXC01004672.1/95113-95007 4558:Sorghum bicolor
(sorghum)
Length = 107
Score = 50.1 bits (25), Expect = 1e-05
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 52 ttttgacttttctagattcatagtgtttgctatgcatctagatataacatatgtctagat 111
||||| |||| |||| | ||||| ||||||| ||| ||||||||| |||||||||||
Sbjct: 100 ttttggctttcctaggtacatagcttttgctaagcacctagatatacgctatgtctagat 41
Query: 112 acatagcaa 120
|||||||||
Sbjct: 40 acatagcaa 32
>RF00906;MIR1122;AF427791.1/1754-1590 4513:Hordeum vulgare
Length = 165
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 152 tatattttggaacggagggagtata 176
|||||||||||||||||||||||||
Sbjct: 141 tatattttggaacggagggagtata 165
>RF00906;MIR1122;AAAA02034559.1/3133-3272 39946:Oryza sativa Indica
Group
Length = 140
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 151 ctatattttggaacggagggagtat 175
|||||||||||||||||||||||||
Sbjct: 28 ctatattttggaacggagggagtat 4
>RF00906;MIR1122;AACV01008813.1/4556-4689 39947:Oryza sativa
Japonica Group
Length = 134
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 151 ctatattttggaacggagggagtat 175
|||||||||||||||||||||||||
Sbjct: 28 ctatattttggaacggagggagtat 4
>RF00906;MIR1122;AC152348.7/114834-114678 3880:Medicago truncatula
(barrel medic)
Length = 157
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 152 tatattttggaacggagggagtat 175
||||||||||||||||||||||||
Sbjct: 131 tatattttggaacggagggagtat 154
>RF00906;MIR1122;AC166046.15/79888-79744 3880:Medicago truncatula
(barrel medic)
Length = 145
Score = 48.1 bits (24), Expect = 5e-05
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 135 aaaaagtcaaaacgacctatattttggaacggagggagta 174
||||||||||| || |||||||||||||||||||||||
Sbjct: 44 aaaaagtcaaatttacttatattttggaacggagggagta 5
>RF00906;MIR1122;AC140029.19/78088-78242 3880:Medicago truncatula
(barrel medic)
Length = 155
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 152 tatattttggaacggagggagtat 175
||||||||||||||||||||||||
Sbjct: 129 tatattttggaacggagggagtat 152
>RF00906;MIR1122;ABXC01000869.1/217-331 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 48.1 bits (24), Expect = 5e-05
Identities = 52/60 (86%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 115 tagcaaaatatatgaatctaaaaaagtcaaaacgacctatattttggaacggagggagta 174
|||||||| |||||||||| ||| | ||||||| | |||| ||||||||||||||||||
Sbjct: 53 tagcaaaagctatgaatctagaaa-gccaaaacgtcttataatttggaacggagggagta 111
Score = 46.1 bits (23), Expect = 2e-04
Identities = 63/75 (84%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 24 tactccctccgttccaaaatgtagatcgttttgacttttctagattcatagtgtttgcta 83
|||||||||||||||||| | || ||||||| |||| |||||||||||| |||||||
Sbjct: 111 tactccctccgttccaaattataagacgttttggcttt-ctagattcatagcttttgcta 53
Query: 84 tgcatctagatataa 98
|| ||||||||||
Sbjct: 52 cacacctagatataa 38
>RF00906;MIR1122;AAAA02020856.1/51643-51799 39946:Oryza sativa
Indica Group
Length = 157
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 151 ctatattttggaacggagggagta 174
||||||||||||||||||||||||
Sbjct: 130 ctatattttggaacggagggagta 153
>RF00906;MIR1122;AAAA02003905.1/26512-26644 39946:Oryza sativa
Indica Group
Length = 133
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 151 ctatattttggaacggagggagta 174
||||||||||||||||||||||||
Sbjct: 28 ctatattttggaacggagggagta 5
>RF00906;MIR1122;AACV01008275.1/11041-11180 39947:Oryza sativa
Japonica Group
Length = 140
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 152 tatattttggaacggagggagtat 175
||||||||||||||||||||||||
Sbjct: 27 tatattttggaacggagggagtat 4
>RF00906;MIR1122;AACV01008227.1/1-122 39947:Oryza sativa Japonica
Group
Length = 122
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 151 ctatattttggaacggagggagta 174
||||||||||||||||||||||||
Sbjct: 26 ctatattttggaacggagggagta 3
>RF00906;MIR1122;AP008209.1/34516197-34516103 39947:Oryza sativa
Japonica Group
Length = 95
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 152 tatattttggaacggagggagtat 175
||||||||||||||||||||||||
Sbjct: 69 tatattttggaacggagggagtat 92
>RF00906;MIR1122;AP008217.1/23244951-23245072 39947:Oryza sativa
Japonica Group
Length = 122
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 151 ctatattttggaacggagggagta 174
||||||||||||||||||||||||
Sbjct: 95 ctatattttggaacggagggagta 118
>RF00906;MIR1122;ABXC01002481.1/9459-9348 4558:Sorghum bicolor
(sorghum)
Length = 112
Score = 46.1 bits (23), Expect = 2e-04
Identities = 43/47 (91%), Gaps = 2/47 (4%)
Strand = Plus / Plus
Query: 23 ctactccctccgttccaaaatgt-agatcgttttgacttttctagat 68
||||||||||||||||||| ||| |||| |||||| |||||||||||
Sbjct: 4 ctactccctccgttccaaattgtaagat-gttttggcttttctagat 49
>RF00906;MIR1122;DQ154924.1/3536-3603 4571:Triticum turgidum
Length = 68
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 154 tattttggaacggagggagtata 176
|||||||||||||||||||||||
Sbjct: 44 tattttggaacggagggagtata 66
>RF00906;MIR1122;AY943294.1/62260-62364 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 tgctactccctccgttccaaaat 43
|||||||||||||||||||||||
Sbjct: 2 tgctactccctccgttccaaaat 24
>RF00906;MIR1122;DQ352178.1/5805-5640 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 166
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 152 tatattttggaacggagggagta 174
|||||||||||||||||||||||
Sbjct: 144 tatattttggaacggagggagta 166
>RF00906;MIR1122;AY133251.1/901-1005 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 154 tattttggaacggagggagtata 176
|||||||||||||||||||||||
Sbjct: 25 tattttggaacggagggagtata 3
>RF00906;MIR1122;DQ445236.1/13423-13319 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 154 tattttggaacggagggagtata 176
|||||||||||||||||||||||
Sbjct: 25 tattttggaacggagggagtata 3
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 154 tattttggaacggagggagtat 175
||||||||||||||||||||||
Sbjct: 81 tattttggaacggagggagtat 102
>RF00906;MIR1122;AAAA02030656.1/4636-4541 39946:Oryza sativa Indica
Group
Length = 96
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 152 tatattttggaacggagggagta 174
|||||||||||||||||||||||
Sbjct: 70 tatattttggaacggagggagta 92
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 22 gctactccctccgttccaaaat 43
||||||||||||||||||||||
Sbjct: 94 gctactccctccgttccaaaat 73
>RF00906;MIR1122;AAAA02003310.1/4753-4639 39946:Oryza sativa Indica
Group
Length = 115
Score = 46.1 bits (23), Expect = 2e-04
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 80 gctatgcatctagatataacatatgtctagatacatagc 118
|||||| ||||||| ||| | ||||||||||||||||||
Sbjct: 78 gctatgtatctagacatagcctatgtctagatacatagc 40
>RF00906;MIR1122;AC111016.2/25572-25452 39947:Oryza sativa Japonica
Group
Length = 121
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 152 tatattttggaacggagggagtatatc 178
|||||||||| ||||||||||||||||
Sbjct: 95 tatattttgggacggagggagtatatc 121
>RF00906;MIR1122;AC232160.1/3827-3951 63629:Oryza minuta
Length = 125
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 152 tatattttggaacggagggagtatatc 178
|||||||||| ||||||||||||||||
Sbjct: 27 tatattttgggacggagggagtatatc 1
>RF00906;MIR1122;AC129718.2/26799-26917 39947:Oryza sativa Japonica
Group
Length = 119
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 152 tatattttggaacggagggagtatatc 178
||||||| |||||||||||||||||||
Sbjct: 27 tatatttaggaacggagggagtatatc 1
>RF00906;MIR1122;AAAA02017235.1/6057-5946 39946:Oryza sativa Indica
Group
Length = 112
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 152 tatattttggaacggagggagtatatc 178
|||||||||| ||||||||||||||||
Sbjct: 27 tatattttgggacggagggagtatatc 1
>RF00906;MIR1122;AC079888.10/111519-111651 39947:Oryza sativa
Japonica Group
Length = 133
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 152 tatattttggaacggagggagta 174
|||||||||||||||||||||||
Sbjct: 107 tatattttggaacggagggagta 129
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 22 gctactccctccgttccaaaat 43
||||||||||||||||||||||
Sbjct: 131 gctactccctccgttccaaaat 110
>RF00906;MIR1122;AP008208.1/1166338-1166449 39947:Oryza sativa
Japonica Group
Length = 112
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 152 tatattttggaacggagggagtatatc 178
|||||||||| ||||||||||||||||
Sbjct: 86 tatattttgggacggagggagtatatc 112
>RF00906;MIR1122;AAAA02006274.1/23456-23551 39946:Oryza sativa
Indica Group
Length = 96
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 152 tatattttggaacggagggagtatatc 178
|||||||||| ||||||||||||||||
Sbjct: 70 tatattttgggacggagggagtatatc 96
>RF00906;MIR1122;AP008215.1/19940245-19940356 39947:Oryza sativa
Japonica Group
Length = 112
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 152 tatattttggaacggagggagtatatc 178
|||||||||| ||||||||||||||||
Sbjct: 86 tatattttgggacggagggagtatatc 112
>RF00906;MIR1122;AL831796.5/20323-20408 4530:Oryza sativa (rice)
Length = 86
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 151 ctatattttggaacggagggagtatat 177
||||||||||| |||||||||||||||
Sbjct: 59 ctatattttgggacggagggagtatat 85
>RF00906;MIR1122;AAAA02015448.1/20736-20847 39946:Oryza sativa
Indica Group
Length = 112
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 152 tatattttggaacggagggagta 174
|||||||||||||||||||||||
Sbjct: 86 tatattttggaacggagggagta 108
>RF00906;MIR1122;AP008218.1/18423778-18423640 39947:Oryza sativa
Japonica Group
Length = 139
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 151 ctatattttggaacggagggagt 173
|||||||||||||||||||||||
Sbjct: 28 ctatattttggaacggagggagt 6
>RF00906;MIR1122;AP002744.2/66920-66805 39947:Oryza sativa Japonica
Group
Length = 116
Score = 46.1 bits (23), Expect = 2e-04
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 80 gctatgcatctagatataacatatgtctagatacatagc 118
|||||| ||||||| ||| | ||||||||||||||||||
Sbjct: 79 gctatgtatctagacatagcctatgtctagatacatagc 41
>RF00906;MIR1122;AP003381.3/77030-76947 39947:Oryza sativa Japonica
Group
Length = 84
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 151 ctatattttggaacggagggagtatat 177
||||||||||| |||||||||||||||
Sbjct: 28 ctatattttgggacggagggagtatat 2
>RF00906;MIR1122;ABXC01000992.1/406365-406501 4558:Sorghum bicolor
(sorghum)
Length = 137
Score = 44.1 bits (22), Expect = 7e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 135 aaaaagtcaaaacgacctatattttggaacggagggag 172
||||||||||| |||| | || ||||||||||||||||
Sbjct: 44 aaaaagtcaaagcgacttgtaatttggaacggagggag 7
>RF00906;MIR1122;ABXC01000529.1/263619-263734 4558:Sorghum bicolor
(sorghum)
Length = 116
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 156 ttttggaacggagggagtatat 177
||||||||||||||||||||||
Sbjct: 23 ttttggaacggagggagtatat 2
>RF00906;MIR1122;ABXC01003647.1/157196-157057 4558:Sorghum bicolor
(sorghum)
Length = 140
Score = 44.1 bits (22), Expect = 7e-04
Identities = 59/70 (84%), Gaps = 1/70 (1%)
Strand = Plus / Minus
Query: 105 tctagatacatagcaaaatatatgaatctaaaaaagtcaaaacgacctatattttggaac 164
||||||| |||||||||||| || | | |||||||||||| | || |||| ||||||||
Sbjct: 73 tctagatgcatagcaaaataggtgtagc-aaaaaagtcaaagcaacttataatttggaac 15
Query: 165 ggagggagta 174
|||||||||
Sbjct: 14 agagggagta 5
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 77 tttgctatgcatctagatataa 98
||||||||||||||||||||||
Sbjct: 57 tttgctatgcatctagatataa 78
>RF00906;MIR1122;ABXC01001887.1/109652-109767 4558:Sorghum bicolor
(sorghum)
Length = 116
Score = 44.1 bits (22), Expect = 7e-04
Identities = 58/70 (82%)
Strand = Plus / Minus
Query: 24 tactccctccgttccaaaatgtagatcgttttgacttttctagattcatagtgtttgcta 83
|||||||||| ||||||| |||| || ||||| ||| ||||| | ||||| |||||||
Sbjct: 112 tactccctccattccaaattgtaagtcattttggcttctctaggtacatagcttttgcta 53
Query: 84 tgcatctaga 93
|||| |||||
Sbjct: 52 tgcacctaga 43
>RF00906;MIR1122;EU660899.1/111846-111744 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 103
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 154 tattttggaacggagggagtat 175
||||||||||||||||||||||
Sbjct: 25 tattttggaacggagggagtat 4
>RF00906;MIR1122;AB182945.1/6773-6906 4565:Triticum aestivum (bread
wheat)
Length = 134
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 154 tattttggaacggagggagtat 175
||||||||||||||||||||||
Sbjct: 110 tattttggaacggagggagtat 131
>RF00906;MIR1122;DQ537335.1/8332-8425 4565:Triticum aestivum (bread
wheat)
Length = 94
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 154 tattttggaacggagggagtat 175
||||||||||||||||||||||
Sbjct: 25 tattttggaacggagggagtat 4
>RF00906;MIR1122;EU812563.1/51726-51572 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 155
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 152 tatattttggaacggagggagtatat 177
||||||| ||||||||||||||||||
Sbjct: 27 tatatttaggaacggagggagtatat 2
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 152 tatattttggaacggagggagtatat 177
||||||| ||||||||||||||||||
Sbjct: 129 tatatttaggaacggagggagtatat 154
>RF00906;MIR1122;AK252971.1/1469-1351 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 119
Score = 44.1 bits (22), Expect = 7e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 143 aaaacgacctatattttggaacggagggagtata 176
|||| ||| ||||||| |||||||||||||||||
Sbjct: 36 aaaaagacttatatttaggaacggagggagtata 3
>RF00906;MIR1122;DQ890018.1/183-48 77009:Hordeum vulgare subsp.
spontaneum
Length = 136
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 155 attttggaacggagggagtata 176
||||||||||||||||||||||
Sbjct: 24 attttggaacggagggagtata 3
>RF00906;MIR1122;AK248896.1/138-279 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 142
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 152 tatattttggaacggagggagtatat 177
||||||| ||||||||||||||||||
Sbjct: 116 tatatttaggaacggagggagtatat 141
>RF00906;MIR1122;AAAA02003593.1/26423-26497 39946:Oryza sativa
Indica Group
Length = 75
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 152 tatattttggaacggagggagtatat 177
|||||||||| |||||||||||||||
Sbjct: 49 tatattttgggacggagggagtatat 74
>RF00906;MIR1122;AC226266.1/92361-92224 63629:Oryza minuta
Length = 138
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 152 tatattttggaacggagggagtatat 177
|||||||||| |||||||||||||||
Sbjct: 112 tatattttgggacggagggagtatat 137
>RF00906;MIR1122;AP008218.1/2340117-2339983 39947:Oryza sativa
Japonica Group
Length = 135
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 152 tatattttggaacggagggagtatat 177
|||||||||| |||||||||||||||
Sbjct: 27 tatattttgggacggagggagtatat 2
>RF00906;MIR1122;AC210491.1/95749-95858 4538:Oryza glaberrima
(African rice)
Length = 110
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 152 tatattttggaacggagggagtatat 177
|||||||||| |||||||||||||||
Sbjct: 84 tatattttgggacggagggagtatat 109
>RF00906;MIR1122;AC137999.2/12932-12822 39947:Oryza sativa Japonica
Group
Length = 111
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 152 tatattttggaacggagggagtatat 177
|||||||||| |||||||||||||||
Sbjct: 27 tatattttgggacggagggagtatat 2
>RF00906;MIR1122;AAAA02035210.1/16587-16706 39946:Oryza sativa
Indica Group
Length = 120
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 152 tatattttggaacggagggagtatat 177
||||||||| ||||||||||||||||
Sbjct: 27 tatattttgaaacggagggagtatat 2
>RF00906;MIR1122;AP008207.1/21121800-21121682 39947:Oryza sativa
Japonica Group
Length = 119
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 152 tatattttggaacggagggagtatat 177
||||||| ||||||||||||||||||
Sbjct: 93 tatatttaggaacggagggagtatat 118
>RF00906;MIR1122;AACV01023551.1/12075-12186 39947:Oryza sativa
Japonica Group
Length = 112
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 152 tatattttggaacggagggagtatat 177
|||||||||| |||||||||||||||
Sbjct: 27 tatattttgggacggagggagtatat 2
>RF00906;MIR1122;AP003760.4/5605-5476 39947:Oryza sativa Japonica
Group
Length = 130
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 152 tatattttggaacggagggagtatat 177
|||||||||| |||||||||||||||
Sbjct: 104 tatattttgggacggagggagtatat 129
>RF00906;MIR1122;AAAA02021208.1/38295-38158 39946:Oryza sativa
Indica Group
Length = 138
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 152 tatattttggaacggagggagtatat 177
||||||| ||||||||||||||||||
Sbjct: 27 tatatttaggaacggagggagtatat 2
>RF00906;MIR1122;AC093953.2/44822-44955 39947:Oryza sativa Japonica
Group
Length = 134
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 152 tatattttggaacggagggagtatat 177
|||||||||| |||||||||||||||
Sbjct: 108 tatattttgggacggagggagtatat 133
>RF00906;MIR1122;AAAA02007660.1/3740-3838 39946:Oryza sativa Indica
Group
Length = 99
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 151 ctatattttggaacggagggagtata 176
||||||||||| ||||||||||||||
Sbjct: 28 ctatattttgggacggagggagtata 3
>RF00906;MIR1122;AK288180.1/1387-1262 39947:Oryza sativa Japonica
Group
Length = 126
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 152 tatattttggaacggagggagtatat 177
|||||||||| |||||||||||||||
Sbjct: 100 tatattttgggacggagggagtatat 125
>RF00906;MIR1122;AC121366.4/55476-55582 39947:Oryza sativa Japonica
Group
Length = 107
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 150 cctatattttggaacggagggagtat 175
|||||||||||| |||||||||||||
Sbjct: 29 cctatattttgggacggagggagtat 4
