miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AC147498.15/3925-4071 3880:Medicago truncatula
(barrel medic)
Length = 147
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 11 actactccccccgtttcaaaatataag 37
||||||||| |||||||||||||||||
Sbjct: 3 actactccctccgtttcaaaatataag 29
>RF00906;MIR1122;AAAA02035005.1/949-832 39946:Oryza sativa Indica
Group
Length = 118
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 11 actactccccccgtttcaaaatataag 37
||||||| |||||||||||||||||||
Sbjct: 116 actactcaccccgtttcaaaatataag 90
>RF00906;MIR1122;AC136219.2/91733-91617 39947:Oryza sativa Japonica
Group
Length = 117
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 12 ctactccccccgtttcaaaatataaga 38
|||||||| ||||||||||||||||||
Sbjct: 114 ctactccctccgtttcaaaatataaga 88
>RF01058;MIR806;AP002855.2/37713-37949 39947:Oryza sativa Japonica
Group
Length = 237
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 tactccccccgtttcaaaatat 34
||||||||||||||||||||||
Sbjct: 2 tactccccccgtttcaaaatat 23
>RF00906;MIR1122;AC153121.15/95512-95668 3880:Medicago truncatula
(barrel medic)
Length = 157
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 12 ctactccccccgtttcaaaatataag 37
|||||||| |||||||||||||||||
Sbjct: 154 ctactccctccgtttcaaaatataag 129
>RF00906;MIR1122;AAAA02035210.1/16587-16706 39946:Oryza sativa
Indica Group
Length = 120
Score = 44.1 bits (22), Expect = 7e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 13 tactccccccgtttcaaaatataagatattttag 46
||||||| ||||||||||||||||| |||||||
Sbjct: 5 tactccctccgtttcaaaatataagggattttag 38
