miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU730899.1/86003-86096 15368:Brachypodium
          distachyon
          Length = 94

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                  
Query: 16 ccctcagtcccaaaataagtgatatggatttgtctagatt 55
          ||||| ||||||||||||||||| ||||||||| ||||||
Sbjct: 86 ccctccgtcccaaaataagtgatgtggatttgtatagatt 47




>RF00906;MIR1122;AF459639.1/191055-190921 4568:Triticum monococcum
          Length = 135

 Score = 50.1 bits (25), Expect = 9e-06
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 40  tggatttgtctagattcggatgtatctag 68
           ||||||||||||||| |||||||||||||
Sbjct: 103 tggatttgtctagatacggatgtatctag 75




>RF00906;MIR1122;EU730900.1/55128-55253 15368:Brachypodium
          distachyon
          Length = 126

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                          
Query: 59 atgtatctagccggattttagtatatagatac 90
          |||||||||| || ||||||||||||||||||
Sbjct: 42 atgtatctagacgtattttagtatatagatac 73




>RF00906;MIR1122;DQ267106.1/62901-62968 4572:Triticum urartu
          Length = 68

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                         
Query: 12 tactccctcagtcccaaaataagtgatatgg 42
          ||||||||| |||||||||||||||| ||||
Sbjct: 64 tactccctctgtcccaaaataagtgacatgg 34




>RF00906;MIR1122;AY887089.1/1801-1936 112509:Hordeum vulgare
          subsp. vulgare (domesticated barley)
          Length = 136

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                     
Query: 10 attactccctcagtcccaaaataagtgatatggatttgtctagattcggatgtatctag 68
          ||||||||||| ||| |||||| | || | || ||||||||||||  ||||||||||||
Sbjct: 3  attactccctccgtctcaaaattattgttttgaatttgtctagatatggatgtatctag 61




>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
          vulgare (domesticated barley)
          Length = 105

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 10 attactccctcagtcccaaaataagtg 36
          ||||||||||| |||||||||||||||
Sbjct: 3  attactccctccgtcccaaaataagtg 29




>RF00906;MIR1122;AY083682.1/10279-10145 4498:Avena sativa (oat)
          Length = 135

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 41 ggatttgtctagattcggatgtatcta 67
          ||||||||||||||||| |||||||||
Sbjct: 34 ggatttgtctagattcgcatgtatcta 60




>RF01058;MIR806;AAAA02014927.1/5775-5532 39946:Oryza sativa Indica
          Group
          Length = 244

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 11 ttactccctcagtcccaaaataagtg 36
          |||||||||| |||||||||||||||
Sbjct: 1  ttactccctccgtcccaaaataagtg 26




>RF01058;MIR806;AP008214.1/5532426-5532666 39947:Oryza sativa
           Japonica Group
          Length = 241

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 11  ttactccctcagtcccaaaataagtg 36
           |||||||||| |||||||||||||||
Sbjct: 241 ttactccctccgtcccaaaataagtg 216




>RF01058;MIR806;AP004672.3/126730-126486 39947:Oryza sativa
          Japonica Group
          Length = 245

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 11 ttactccctcagtcccaaaataagtg 36
          |||||||||| |||||||||||||||
Sbjct: 1  ttactccctccgtcccaaaataagtg 26




>RF01058;MIR806;AACV01005022.1/1990-2230 39947:Oryza sativa Japonica
           Group
          Length = 241

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 11  ttactccctcagtcccaaaataagtg 36
           |||||||||| |||||||||||||||
Sbjct: 241 ttactccctccgtcccaaaataagtg 216




>RF00906;MIR1122;DQ123819.1/2832-2966 4571:Triticum turgidum
          Length = 135

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 43 atttgtctagattcggatgtatctag 68
          |||||||||||| |||||||||||||
Sbjct: 36 atttgtctagatacggatgtatctag 61




>RF00906;MIR1122;FJ491378.1/4581-4466 4550:Secale cereale (rye)
          Length = 116

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 12 tactccctcagtcccaaaataagtga 37
          ||||||||| ||||||||||||||||
Sbjct: 5  tactccctctgtcccaaaataagtga 30



 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 12  tactccctcagtcccaaaataagtga 37
           ||||||||| ||||||||||||||||
Sbjct: 112 tactccctccgtcccaaaataagtga 87




>RF00906;MIR1122;AJ507395.1/7785-7899 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 115

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 12  tactccctcagtcccaaaataagtga 37
           ||||||||| ||||||||||||||||
Sbjct: 111 tactccctccgtcccaaaataagtga 86




>RF00906;MIR1122;AF521177.1/81577-81474 4513:Hordeum vulgare
          Length = 104

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 12  tactccctcagtcccaaaataagtga 37
           ||||||||| ||||||||||||||||
Sbjct: 100 tactccctccgtcccaaaataagtga 75




>RF00906;MIR1122;AF181455.1/3108-2994 4513:Hordeum vulgare
          Length = 115

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 12  tactccctcagtcccaaaataagtga 37
           ||||||||| ||||||||||||||||
Sbjct: 111 tactccctccgtcccaaaataagtga 86




>RF00906;MIR1122;FJ477093.1/40908-41001 4513:Hordeum vulgare
          Length = 94

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 12 tactccctcagtcccaaaataagtga 37
          ||||||||| ||||||||||||||||
Sbjct: 5  tactccctctgtcccaaaataagtga 30




>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
          Length = 132

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 12 tactccctcagtcccaaaataagtga 37
          ||||||||| ||||||||||||||||
Sbjct: 5  tactccctccgtcccaaaataagtga 30