miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU730899.1/86003-86096 15368:Brachypodium
distachyon
Length = 94
Score = 56.0 bits (28), Expect = 1e-07
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 16 ccctcagtcccaaaataagtgatatggatttgtctagatt 55
||||| ||||||||||||||||| ||||||||| ||||||
Sbjct: 86 ccctccgtcccaaaataagtgatgtggatttgtatagatt 47
>RF00906;MIR1122;AF459639.1/191055-190921 4568:Triticum monococcum
Length = 135
Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 40 tggatttgtctagattcggatgtatctag 68
||||||||||||||| |||||||||||||
Sbjct: 103 tggatttgtctagatacggatgtatctag 75
>RF00906;MIR1122;EU730900.1/55128-55253 15368:Brachypodium
distachyon
Length = 126
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 59 atgtatctagccggattttagtatatagatac 90
|||||||||| || ||||||||||||||||||
Sbjct: 42 atgtatctagacgtattttagtatatagatac 73
>RF00906;MIR1122;DQ267106.1/62901-62968 4572:Triticum urartu
Length = 68
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 12 tactccctcagtcccaaaataagtgatatgg 42
||||||||| |||||||||||||||| ||||
Sbjct: 64 tactccctctgtcccaaaataagtgacatgg 34
>RF00906;MIR1122;AY887089.1/1801-1936 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 136
Score = 46.1 bits (23), Expect = 1e-04
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 10 attactccctcagtcccaaaataagtgatatggatttgtctagattcggatgtatctag 68
||||||||||| ||| |||||| | || | || |||||||||||| ||||||||||||
Sbjct: 3 attactccctccgtctcaaaattattgttttgaatttgtctagatatggatgtatctag 61
>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 10 attactccctcagtcccaaaataagtg 36
||||||||||| |||||||||||||||
Sbjct: 3 attactccctccgtcccaaaataagtg 29
>RF00906;MIR1122;AY083682.1/10279-10145 4498:Avena sativa (oat)
Length = 135
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 41 ggatttgtctagattcggatgtatcta 67
||||||||||||||||| |||||||||
Sbjct: 34 ggatttgtctagattcgcatgtatcta 60
>RF01058;MIR806;AAAA02014927.1/5775-5532 39946:Oryza sativa Indica
Group
Length = 244
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 ttactccctcagtcccaaaataagtg 36
|||||||||| |||||||||||||||
Sbjct: 1 ttactccctccgtcccaaaataagtg 26
>RF01058;MIR806;AP008214.1/5532426-5532666 39947:Oryza sativa
Japonica Group
Length = 241
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 11 ttactccctcagtcccaaaataagtg 36
|||||||||| |||||||||||||||
Sbjct: 241 ttactccctccgtcccaaaataagtg 216
>RF01058;MIR806;AP004672.3/126730-126486 39947:Oryza sativa
Japonica Group
Length = 245
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 ttactccctcagtcccaaaataagtg 36
|||||||||| |||||||||||||||
Sbjct: 1 ttactccctccgtcccaaaataagtg 26
>RF01058;MIR806;AACV01005022.1/1990-2230 39947:Oryza sativa Japonica
Group
Length = 241
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 11 ttactccctcagtcccaaaataagtg 36
|||||||||| |||||||||||||||
Sbjct: 241 ttactccctccgtcccaaaataagtg 216
>RF00906;MIR1122;DQ123819.1/2832-2966 4571:Triticum turgidum
Length = 135
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 43 atttgtctagattcggatgtatctag 68
|||||||||||| |||||||||||||
Sbjct: 36 atttgtctagatacggatgtatctag 61
>RF00906;MIR1122;FJ491378.1/4581-4466 4550:Secale cereale (rye)
Length = 116
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 12 tactccctcagtcccaaaataagtga 37
||||||||| ||||||||||||||||
Sbjct: 5 tactccctctgtcccaaaataagtga 30
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 12 tactccctcagtcccaaaataagtga 37
||||||||| ||||||||||||||||
Sbjct: 112 tactccctccgtcccaaaataagtga 87
>RF00906;MIR1122;AJ507395.1/7785-7899 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 115
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 12 tactccctcagtcccaaaataagtga 37
||||||||| ||||||||||||||||
Sbjct: 111 tactccctccgtcccaaaataagtga 86
>RF00906;MIR1122;AF521177.1/81577-81474 4513:Hordeum vulgare
Length = 104
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 12 tactccctcagtcccaaaataagtga 37
||||||||| ||||||||||||||||
Sbjct: 100 tactccctccgtcccaaaataagtga 75
>RF00906;MIR1122;AF181455.1/3108-2994 4513:Hordeum vulgare
Length = 115
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 12 tactccctcagtcccaaaataagtga 37
||||||||| ||||||||||||||||
Sbjct: 111 tactccctccgtcccaaaataagtga 86
>RF00906;MIR1122;FJ477093.1/40908-41001 4513:Hordeum vulgare
Length = 94
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 12 tactccctcagtcccaaaataagtga 37
||||||||| ||||||||||||||||
Sbjct: 5 tactccctctgtcccaaaataagtga 30
>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
Length = 132
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 12 tactccctcagtcccaaaataagtga 37
||||||||| ||||||||||||||||
Sbjct: 5 tactccctccgtcccaaaataagtga 30