miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU730900.1/33277-33412 15368:Brachypodium
distachyon
Length = 136
Score = 54.0 bits (27), Expect = 5e-07
Identities = 75/91 (82%)
Strand = Plus / Plus
Query: 9 actactccctccgtctcaaaatagatgtcacagatttatcaaaatttaaatgaatctaga 68
||||||||||||||| | || ||||||| || ||| ||||||||| |||| |||||||
Sbjct: 3 actactccctccgtccaacaaaagatgtctcaagtttgtcaaaatttgaatgtatctaga 62
Query: 69 cattatttaggatatagatacatccaaattt 99
||| | |||| ||||||| ||| |||||||
Sbjct: 63 catgacttagtgtatagatgcattcaaattt 93
>RF00906;MIR1122;EU282770.1/593-711 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 119
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 8 tactactccctccgtctcaaaatagatgtc 37
||||||||||||||||||||||||| ||||
Sbjct: 2 tactactccctccgtctcaaaataggtgtc 31
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 112 gacacctattttgagacggaggaagta 138
|||||||||||||||||||||| ||||
Sbjct: 31 gacacctattttgagacggagggagta 5
>RF00906;MIR1122;AC192352.2/55884-55804 3880:Medicago truncatula
(barrel medic)
Length = 81
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 8 tactactccctccgtctcaaaata 31
||||||||||||||||||||||||
Sbjct: 80 tactactccctccgtctcaaaata 57
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 ctactccctccgtctcaaaata 31
||||||||||||||||||||||
Sbjct: 4 ctactccctccgtctcaaaata 25
>RF00906;MIR1122;EU282768.1/632-528 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 8 tactactccctccgtctcaaaata 31
||||||||||||||||||||||||
Sbjct: 104 tactactccctccgtctcaaaata 81
>RF00906;MIR1122;EU282771.1/632-528 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 8 tactactccctccgtctcaaaata 31
||||||||||||||||||||||||
Sbjct: 104 tactactccctccgtctcaaaata 81
>RF00906;MIR1122;AACV01002208.1/17153-17286 39947:Oryza sativa
Japonica Group
Length = 134
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 9 actactccctccgtctcaaaata 31
|||||||||||||||||||||||
Sbjct: 132 actactccctccgtctcaaaata 110
>RF00906;MIR1122;CR855136.1/20944-20809 4530:Oryza sativa (rice)
Length = 136
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 9 actactccctccgtctcaaaata 31
|||||||||||||||||||||||
Sbjct: 134 actactccctccgtctcaaaata 112
>RF00906;MIR1122;AAAA02026044.1/32315-32427 39946:Oryza sativa
Indica Group
Length = 113
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 11 tactccctccgtctcaaaataga 33
|||||||||||||||||||||||
Sbjct: 109 tactccctccgtctcaaaataga 87
>RF00906;MIR1122;AJ234485.1/114-218 4513:Hordeum vulgare
Length = 105
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 112 gacacctattttgagacggaggaagtacta 141
||||| |||||||||||||||| |||||||
Sbjct: 31 gacacttattttgagacggagggagtacta 2
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 8 tactactccctccgtctcaaaatagatgtc 37
|||||||||||||||| ||||||| |||||
Sbjct: 104 tactactccctccgtcccaaaataaatgtc 75
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 8 tactactccctccgtctcaaaatagatgtc 37
|||||||||||||||| ||||||| |||||
Sbjct: 104 tactactccctccgtcccaaaataaatgtc 75
>RF00906;MIR1122;EU730899.1/36951-37090 15368:Brachypodium
distachyon
Length = 140
Score = 44.1 bits (22), Expect = 5e-04
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 10 ctactccctccgtctcaaaatagatgtcacagatttatcaaaatttaaatgaatctagac 69
|||||||||||||| | || ||||||| || |||| ||||||||| || |||||||||
Sbjct: 4 ctactccctccgtccaataaaagatgtctcaaatttgtcaaaatttggataaatctagac 63
Query: 70 at 71
||
Sbjct: 64 at 65
>RF00906;MIR1122;AACV01008275.1/11041-11180 39947:Oryza sativa
Japonica Group
Length = 140
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 10 ctactccctccgtctcaaaata 31
||||||||||||||||||||||
Sbjct: 137 ctactccctccgtctcaaaata 116
>RF00906;MIR1122;AAAA02004858.1/41238-41369 39946:Oryza sativa
Indica Group
Length = 132
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 tactactccctccgtctcaaaa 29
||||||||||||||||||||||
Sbjct: 2 tactactccctccgtctcaaaa 23
