miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00452;mir-172;AARH01003915.1/155600-155740 3694:Populus
trichocarpa
Length = 141
Score = 248 bits (125), Expect = 2e-65
Identities = 138/141 (97%), Gaps = 1/141 (0%)
Strand = Plus / Minus
Query: 21 tttattgccgatgcagcatcatcaagattctcacttccaaagaactttggcagatgaaca 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 tttattgccgatgcagcatcatcaagattctcacttccaaagaactttggcagatgaaca 82
Query: 81 gaaacaaagagagatttaactc-taacatctccggccgtgcatttgcatgtgaatcttga 139
|||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 81 gaaacaaagaaagatttaactcttaacatcaccggccgtgcatttgcatgtgaatcttga 22
Query: 140 tgatgctccacccgcaaacaa 160
|||||||||||||||||||||
Sbjct: 21 tgatgctccacccgcaaacaa 1
>RF00452;mir-172;AC182714.2/88903-88742 3694:Populus trichocarpa
Length = 162
Score = 125 bits (63), Expect = 2e-28
Identities = 72/75 (96%)
Strand = Plus / Minus
Query: 21 tttattgccgatgcagcatcatcaagattctcacttccaaagaactttggcagatgaaca 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 162 tttattgccgatgcagcatcatcaagattctcacttccaaagaactttggcagatgatca 103
Query: 81 gaaacaaagagagat 95
|||| ||||| ||||
Sbjct: 102 gaaagaaagaaagat 88
Score = 65.9 bits (33), Expect = 2e-10
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 112 cggccgtgcatttgcatgtgaatcttgatgatgctccacccgcaaacaa 160
||||| ||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 49 cggccatgcatttgcatgtgaatcttggtgatgcagcacccgcaaacaa 1
>RF00452;mir-172;AASG02011039.1/5310-5468 3988:Ricinus communis
(castor bean)
Length = 159
Score = 83.8 bits (42), Expect = 8e-16
Identities = 45/46 (97%)
Strand = Plus / Minus
Query: 115 ccgtgcatttgcatgtgaatcttgatgatgctccacccgcaaacaa 160
|||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 46 ccgtgcatttgcatgtgaatcttgatgatgctacacccgcaaacaa 1
Score = 65.9 bits (33), Expect = 2e-10
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 21 tttattgccgatgcagcatcatcaagattctcacttccaaa 61
|||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 159 tttattgctgatgcagcatcatcaagattctcactttcaaa 119
>RF00452;mir-172;ABIM01030483.1/4658-4870 3649:Carica papaya
(papaya)
Length = 213
Score = 73.8 bits (37), Expect = 7e-13
Identities = 46/49 (93%)
Strand = Plus / Minus
Query: 23 tattgccgatgcagcatcatcaagattctcacttccaaagaactttggc 71
||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 211 tattgtcgatgcagcatcatcaagattctcactctcaaagaactttggc 163
Score = 58.0 bits (29), Expect = 4e-08
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 121 atttgcatgtgaatcttgatgatgctccacccgcaaa 157
|||||||||||||||||||||||||| ||||| ||||
Sbjct: 40 atttgcatgtgaatcttgatgatgctacacccacaaa 4
>RF00452;mir-172;CAAP02003282.1/14594-14705 29760:Vitis vinifera
Length = 112
Score = 67.9 bits (34), Expect = 4e-11
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 115 ccgtgcatttgcatgtgaatcttgatgatgctccacccgcaaacaa 160
|||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 46 ccgtgcatttgcatgtgaatcttgatgatgctacatgcgcaaacaa 1
Score = 65.9 bits (33), Expect = 2e-10
Identities = 33/33 (100%)
Strand = Plus / Minus
Query: 21 tttattgccgatgcagcatcatcaagattctca 53
|||||||||||||||||||||||||||||||||
Sbjct: 112 tttattgccgatgcagcatcatcaagattctca 80
>RF00452;mir-172;BABK01027900.1/1116-1276 34305:Lotus japonicus
Length = 161
Score = 61.9 bits (31), Expect = 3e-09
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 21 tttattgccgatgcagcatcatcaagattctcacttccaaaga 63
||||| ||| ||||||||||||||||||||||||||| |||||
Sbjct: 161 tttatggccaatgcagcatcatcaagattctcacttcaaaaga 119
Score = 54.0 bits (27), Expect = 7e-07
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 118 tgcatttgcatgtgaatcttgatgatgctccacccgcaaacaa 160
|||||||||||||||||||||||| |||| || | ||||||||
Sbjct: 43 tgcatttgcatgtgaatcttgatggtgctacatcagcaaacaa 1
>RF00452;mir-172;AM457961.2/1662-1782 29760:Vitis vinifera
Length = 121
Score = 61.9 bits (31), Expect = 3e-09
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 122 tttgcatgtgaatcttgatgatgctccacccgcaaacaa 160
||||||||||||||||||||||||| |||| ||||||||
Sbjct: 39 tttgcatgtgaatcttgatgatgctacacctgcaaacaa 1
Score = 61.9 bits (31), Expect = 3e-09
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 23 tattgccgatgcagcatcatcaagattctca 53
|||||||||||||||||||||||||||||||
Sbjct: 119 tattgccgatgcagcatcatcaagattctca 89
>RF00452;mir-172;CAAP02000586.1/29172-29291 29760:Vitis vinifera
Length = 120
Score = 61.9 bits (31), Expect = 3e-09
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 23 tattgccgatgcagcatcatcaagattctca 53
|||||||||||||||||||||||||||||||
Sbjct: 118 tattgccgatgcagcatcatcaagattctca 88
Score = 56.0 bits (28), Expect = 2e-07
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 125 gcatgtgaatcttgatgatgctccacccgcaaacaa 160
|||||||||||||||||||||| |||| ||||||||
Sbjct: 36 gcatgtgaatcttgatgatgctacacctgcaaacaa 1
>RF00452;mir-172;FM163855.1/191-306 3702:Arabidopsis thaliana (thale
cress)
Length = 116
Score = 60.0 bits (30), Expect = 1e-08
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 24 attgccgatgcagcatcatcaagattctca 53
||||||||||||||||||||||||||||||
Sbjct: 113 attgccgatgcagcatcatcaagattctca 84
>RF00452;mir-172;ABIM01012229.1/3274-3102 3649:Carica papaya
(papaya)
Length = 173
Score = 58.0 bits (29), Expect = 4e-08
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 21 tttattgccgatgcagcatcatcaagattctca 53
||||| |||||||||||||||||||||||||||
Sbjct: 173 tttatggccgatgcagcatcatcaagattctca 141
>RF00452;mir-172;BABK01012763.1/1927-2053 34305:Lotus japonicus
Length = 127
Score = 58.0 bits (29), Expect = 4e-08
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 128 tgtgaatcttgatgatgctccacccgcaaacaa 160
|||||||||||||||||||||||| ||||||||
Sbjct: 33 tgtgaatcttgatgatgctccaccagcaaacaa 1
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 32 tgcagcatcatcaagattctca 53
||||||||||||||||||||||
Sbjct: 121 tgcagcatcatcaagattctca 100
>RF00452;mir-172;BABK01107385.1/174-85 34305:Lotus japonicus
Length = 90
Score = 58.0 bits (29), Expect = 4e-08
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 21 tttattgccgatgcagcatcatcaagattctca 53
|||||||| ||||||||||||||||||||||||
Sbjct: 90 tttattgctgatgcagcatcatcaagattctca 58
>RF00452;mir-172;ABIM01001078.1/716-916 3649:Carica papaya (papaya)
Length = 201
Score = 56.0 bits (28), Expect = 2e-07
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 128 tgtgaatcttgatgatgctccacccgcaaaca 159
|||||||||||||||||||||| |||||||||
Sbjct: 33 tgtgaatcttgatgatgctccatccgcaaaca 2
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 21 tttattgccgatgcagcatcatcaagattc 50
|||||||||| |||||||||||||||||||
Sbjct: 201 tttattgccgctgcagcatcatcaagattc 172
>RF00452;mir-172;AARH01003539.1/168033-168162 3694:Populus
trichocarpa
Length = 130
Score = 56.0 bits (28), Expect = 2e-07
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 121 atttgcatgtgaatcttgatgatgctccacccgcaaacaa 160
||||| |||||||||||||||||||| |||| ||||||||
Sbjct: 40 atttgaatgtgaatcttgatgatgctgcacctgcaaacaa 1
Score = 52.0 bits (26), Expect = 3e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 21 tttattgccgatgcagcatcatcaagattctcac 54
||||| || |||||||||||||||||||||||||
Sbjct: 130 tttatggctgatgcagcatcatcaagattctcac 97
>RF00452;mir-172;AARH01004415.1/120029-119901 3694:Populus
trichocarpa
Length = 129
Score = 56.0 bits (28), Expect = 2e-07
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 21 tttattgccgatgcagcatcatcaagattctcacttccaaagaa 64
||||| || ||||||||||||||||||||||||| | |||||||
Sbjct: 129 tttatggctgatgcagcatcatcaagattctcaccttcaaagaa 86
Score = 54.0 bits (27), Expect = 7e-07
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 122 tttgcatgtgaatcttgatgatgctccacccgcaaacaa 160
|||| |||||||||||||||||||| |||| ||||||||
Sbjct: 39 tttgaatgtgaatcttgatgatgctgcacctgcaaacaa 1
>RF00452;mir-172;AM481129.2/11694-11833 29760:Vitis vinifera
Length = 140
Score = 56.0 bits (28), Expect = 2e-07
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 128 tgtgaatcttgatgatgctccacccgcaaaca 159
|||||||||||||||||||||| |||||||||
Sbjct: 33 tgtgaatcttgatgatgctccatccgcaaaca 2
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 21 tttattgccgatgcagcatcatcaagattc 50
|||||||||| |||||||||||||||||||
Sbjct: 140 tttattgccgctgcagcatcatcaagattc 111
>RF00452;mir-172;AASG02049897.1/697-856 3988:Ricinus communis
(castor bean)
Length = 160
Score = 54.0 bits (27), Expect = 7e-07
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 122 tttgcatgtgaatcttgatgatgctccacccgcaaacaa 160
||||||||||||||||| ||||||| |||| ||||||||
Sbjct: 39 tttgcatgtgaatcttggtgatgctgcacctgcaaacaa 1
Score = 52.0 bits (26), Expect = 3e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 30 gatgcagcatcatcaagattctcacttccaaaga 63
||||||||||||||||||||||||| | ||||||
Sbjct: 151 gatgcagcatcatcaagattctcaccttcaaaga 118
>RF00452;mir-172;EU549232.1/232-344 3702:Arabidopsis thaliana (thale
cress)
Length = 113
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 24 attgccgatgcagcatcatcaagattctca 53
||||||| ||||||||||||||||||||||
Sbjct: 110 attgccgctgcagcatcatcaagattctca 81
>RF00452;mir-172;AARH01004394.1/257332-257189 3694:Populus
trichocarpa
Length = 144
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 21 tttattgccgatgcagcatcatcaagattc 50
|||||||||| |||||||||||||||||||
Sbjct: 144 tttattgccgctgcagcatcatcaagattc 115
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 128 tgtgaatcttgatgatgctcca 149
||||||||||||||||||||||
Sbjct: 33 tgtgaatcttgatgatgctcca 12
>RF00452;mir-172;AARH01003860.1/86743-86610 3694:Populus trichocarpa
Length = 134
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 25 ttgccgatgcagcatcatcaagattc 50
||||||||||||||||||||||||||
Sbjct: 130 ttgccgatgcagcatcatcaagattc 105
>RF00452;mir-172;AARH01000428.1/33766-33584 3694:Populus trichocarpa
Length = 183
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 25 ttgccgatgcagcatcatcaagattc 50
||||||||||||||||||||||||||
Sbjct: 179 ttgccgatgcagcatcatcaagattc 154
>RF00452;mir-172;AASG02005670.1/14724-14879 3988:Ricinus communis
(castor bean)
Length = 156
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 21 tttattgccgatgcagcatcatcaagattc 50
|||||||||| |||||||||||||||||||
Sbjct: 156 tttattgccgctgcagcatcatcaagattc 127
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 128 tgtgaatcttgatgatgctccacccgcaaaca 159
|||||||||||||||||||||| | |||||||
Sbjct: 33 tgtgaatcttgatgatgctccatcagcaaaca 2
>RF00452;mir-172;AASG02019478.1/457-599 3988:Ricinus communis
(castor bean)
Length = 143
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 25 ttgccgatgcagcatcatcaagattctca 53
|||| ||||||||||||||||||||||||
Sbjct: 139 ttgctgatgcagcatcatcaagattctca 111
>RF00452;mir-172;BABK01039752.1/451-284 34305:Lotus japonicus
Length = 168
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 25 ttgccgatgcagcatcatcaagattctca 53
|||| ||||||||||||||||||||||||
Sbjct: 164 ttgctgatgcagcatcatcaagattctca 136
>RF00452;mir-172;ABXC01006306.1/12162-12041 4558:Sorghum bicolor
(sorghum)
Length = 122
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 25 ttgccgatgcagcatcatcaagattctca 53
|||| ||||||||||||||||||||||||
Sbjct: 118 ttgctgatgcagcatcatcaagattctca 90
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 127 atgtgaatcttgatgatgctccacccgcaa 156
|||||||||||||||||||| |||| ||||
Sbjct: 34 atgtgaatcttgatgatgctgcacctgcaa 5
>RF00452;mir-172;EU869069.1/352-463 39946:Oryza sativa Indica Group
Length = 112
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 25 ttgccgatgcagcatcatcaagattctca 53
|||| ||||||||||||||||||||||||
Sbjct: 108 ttgctgatgcagcatcatcaagattctca 80
>RF00452;mir-172;AC189388.2/19492-19378 51351:Brassica rapa subsp.
pekinensis
Length = 115
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 30 gatgcagcatcatcaagattctca 53
||||||||||||||||||||||||
Sbjct: 106 gatgcagcatcatcaagattctca 83
>RF00452;mir-172;FM163882.1/53-161 3702:Arabidopsis thaliana (thale
cress)
Length = 109
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 30 gatgcagcatcatcaagattctca 53
||||||||||||||||||||||||
Sbjct: 100 gatgcagcatcatcaagattctca 77
>RF00452;mir-172;EU945504.1/992-1139 4577:Zea mays
Length = 148
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 30 gatgcagcatcatcaagattctca 53
||||||||||||||||||||||||
Sbjct: 139 gatgcagcatcatcaagattctca 116
>RF00452;mir-172;ABXC01002997.1/14893-14755 4558:Sorghum bicolor
(sorghum)
Length = 139
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 30 gatgcagcatcatcaagattctca 53
||||||||||||||||||||||||
Sbjct: 130 gatgcagcatcatcaagattctca 107
>RF00452;mir-172;ABXC01001026.1/165015-165125 4558:Sorghum bicolor
(sorghum)
Length = 111
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 30 gatgcagcatcatcaagattctca 53
||||||||||||||||||||||||
Sbjct: 102 gatgcagcatcatcaagattctca 79
>RF00452;mir-172;AP006162.2/95640-95748 39947:Oryza sativa Japonica
Group
Length = 109
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 30 gatgcagcatcatcaagattctca 53
||||||||||||||||||||||||
Sbjct: 100 gatgcagcatcatcaagattctca 77
>RF00452;mir-172;EU549250.1/242-366 3702:Arabidopsis thaliana (thale
cress)
Length = 125
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 25 ttgccgatgcagcatcatcaagattctcact 55
|||| ||||||||||||||||||||| ||||
Sbjct: 121 ttgctgatgcagcatcatcaagattcccact 91
>RF00452;mir-172;CAAP02002084.1/47016-46906 29760:Vitis vinifera
Length = 111
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 31 atgcagcatcatcaagattctca 53
|||||||||||||||||||||||
Sbjct: 101 atgcagcatcatcaagattctca 79
>RF00452;mir-172;AP003298.3/17210-16973 39947:Oryza sativa Japonica
Group
Length = 238
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 28 ccgatgcagcatcatcaagattc 50
|||||||||||||||||||||||
Sbjct: 231 ccgatgcagcatcatcaagattc 209
>RF00452;mir-172;AC189648.2/24074-23978 51351:Brassica rapa subsp.
pekinensis
Length = 97
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 25 ttgccgatgcagcatcatcaagattc 50
|||| |||||||||||||||||||||
Sbjct: 93 ttgctgatgcagcatcatcaagattc 68
>RF00452;mir-172;EU549227.1/243-121 3702:Arabidopsis thaliana (thale
cress)
Length = 123
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 128 tgtgaatcttgatgatgctcca 149
||||||||||||||||||||||
Sbjct: 33 tgtgaatcttgatgatgctcca 12
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 32 tgcagcatcatcaagattctca 53
||||||||||||||||||||||
Sbjct: 112 tgcagcatcatcaagattctca 91
