miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;AC189627.2/36180-36072 51351:Brassica rapa subsp.
pekinensis
Length = 109
Score = 145 bits (73), Expect = 2e-34
Identities = 100/109 (91%)
Strand = Plus / Plus
Query: 12 agtcctctttgatattggcctggttcactcagatattccagataacgcacgcaccacatt 71
|||||||||||||||||||||||||||||||||| |||||||| || |||| || | ||
Sbjct: 1 agtcctctttgatattggcctggttcactcagatcttccagattacacacgtactatata 60
Query: 72 ctttctcttagttatctgattgagccgcgccaatatctcagtgctctct 120
| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cattctctcagttatctgattgagccgcgccaatatctcagtgctctct 109
>RF00643;MIR171_1;EU549097.1/220-333 3702:Arabidopsis thaliana
(thale cress)
Length = 114
Score = 67.9 bits (34), Expect = 3e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 83 ttatctgattgagccgcgccaatatctcagtgctctct 120
||||||||||||||||||||||||||||||| ||||||
Sbjct: 77 ttatctgattgagccgcgccaatatctcagtactctct 114
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 18 ctttgatattggcctggttcactcagat 45
||||||||||||||||||||||||||||
Sbjct: 7 ctttgatattggcctggttcactcagat 34
>RF00643;MIR171_1;AC215372.2/27425-27538 4081:Solanum lycopersicum
Length = 114
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 18 ctttgatattggcctggttcactcaga 44
|||||||||||||||||||||||||||
Sbjct: 7 ctttgatattggcctggttcactcaga 33
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 88 tgattgagccgcgccaatatctcagt 113
||||||||||| ||||||||||||||
Sbjct: 82 tgattgagccgtgccaatatctcagt 107
>RF00643;MIR171_1;AP003573.3/25796-25895 39947:Oryza sativa Japonica
Group
Length = 100
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 84 tatctgattgagccgcgccaatatctc 110
|||||||||||||||||||||||||||
Sbjct: 64 tatctgattgagccgcgccaatatctc 90
>RF00643;MIR171_1;EU549081.1/305-220 3702:Arabidopsis thaliana
(thale cress)
Length = 86
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 21 tgatattggcctggttcactcagat 45
|||||||||||||||||||||||||
Sbjct: 10 tgatattggcctggttcactcagat 34
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 85 atctgattgagccgcgccaatatctcagtgctctct 120
|||||||||||||| | |||||||||||| ||||||
Sbjct: 51 atctgattgagccgtgtcaatatctcagtcctctct 86
>RF00643;MIR171_1;AARH01001039.1/225464-225596 3694:Populus
trichocarpa
Length = 133
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 86 tctgattgagccgcgccaatatctcagtgctct 118
||||||||||||| |||||||||| ||||||||
Sbjct: 99 tctgattgagccgtgccaatatcttagtgctct 131
>RF00643;MIR171_1;AASG02019837.1/638-762 3988:Ricinus communis
(castor bean)
Length = 125
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 88 tgattgagccgcgccaatatctcagtgct 116
||||||||||| |||||||||||||||||
Sbjct: 93 tgattgagccgtgccaatatctcagtgct 121
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 tgatattggcctggttcactcaga 44
||||||||||||||||||||||||
Sbjct: 10 tgatattggcctggttcactcaga 33
>RF00643;MIR171_1;EU940714.1/212-315 4577:Zea mays
Length = 104
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 86 tctgattgagccgcgccaatatctcagtgctct 118
||||||||||||| |||||||||||||| ||||
Sbjct: 70 tctgattgagccgtgccaatatctcagtactct 102
>RF00643;MIR171_1;EU946837.1/362-465 4577:Zea mays
Length = 104
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 86 tctgattgagccgcgccaatatctcagtgctct 118
||||||||||||| |||||||||||||| ||||
Sbjct: 70 tctgattgagccgtgccaatatctcagtactct 102
>RF00643;MIR171_1;ABXC01000737.1/81777-81641 4558:Sorghum bicolor
(sorghum)
Length = 137
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 86 tctgattgagccgcgccaatatctcagtgctct 118
||||||||||||| |||||||||||||| ||||
Sbjct: 103 tctgattgagccgtgccaatatctcagtactct 135
>RF00643;MIR171_1;AC215662.2/9608-9473 4537:Oryza punctata
Length = 136
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 86 tctgattgagccgcgccaatatctcagtgctct 118
||||||||||||| |||||||||| ||||||||
Sbjct: 102 tctgattgagccgtgccaatatcttagtgctct 134
>RF00643;MIR171_1;AAAA02007796.1/27966-27846 39946:Oryza sativa
Indica Group
Length = 121
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 86 tctgattgagccgcgccaatatctcagtgctct 118
||||||||||||| |||||||||| ||||||||
Sbjct: 87 tctgattgagccgtgccaatatcttagtgctct 119
>RF00643;MIR171_1;AP008209.1/1950936-1951056 39947:Oryza sativa
Japonica Group
Length = 121
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 86 tctgattgagccgcgccaatatctcagtgctct 118
||||||||||||| |||||||||| ||||||||
Sbjct: 87 tctgattgagccgtgccaatatcttagtgctct 119
>RF00643;MIR171_1;ABIM01002570.1/7961-8103 3649:Carica papaya
(papaya)
Length = 143
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 tgatattggcctggttcactcaga 44
||||||||||||||||||||||||
Sbjct: 10 tgatattggcctggttcactcaga 33
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 88 tgattgagccgcgccaatatctcagtgc 115
||||||||||| ||||||||||||||||
Sbjct: 111 tgattgagccgtgccaatatctcagtgc 138
>RF00643;MIR171_1;AY728471.1/4-115 3694:Populus trichocarpa
Length = 112
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 22 gatattggcctggttcactcagat 45
||||||||||||||||||||||||
Sbjct: 1 gatattggcctggttcactcagat 24
>RF00643;MIR171_1;AP010316.1/5761-5862 34305:Lotus japonicus
Length = 102
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 85 atctgattgagccgcgccaatatc 108
||||||||||||||||||||||||
Sbjct: 67 atctgattgagccgcgccaatatc 90
>RF00643;MIR171_1;AM486682.2/2891-2758 29760:Vitis vinifera
Length = 134
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 88 tgattgagccgcgccaatatctcagtgc 115
||||||||||| ||||||||||||||||
Sbjct: 102 tgattgagccgtgccaatatctcagtgc 129
>RF00643;MIR171_1;AASG02000279.1/67999-67862 3988:Ricinus communis
(castor bean)
Length = 138
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 88 tgattgagccgcgccaatatctcagtgctct 118
||||||||||| |||||||||| ||||||||
Sbjct: 106 tgattgagccgtgccaatatcttagtgctct 136
>RF00643;MIR171_1;AC150705.17/109871-109755 3880:Medicago
truncatula (barrel medic)
Length = 117
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 gatattggcctggttcactcaga 44
|||||||||||||||||||||||
Sbjct: 11 gatattggcctggttcactcaga 33
>RF00643;MIR171_1;BABK01108397.1/266-409 34305:Lotus japonicus
Length = 144
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 gatattggcctggttcactcaga 44
|||||||||||||||||||||||
Sbjct: 11 gatattggcctggttcactcaga 33
>RF00643;MIR171_1;CAAP02000222.1/31256-31356 29760:Vitis vinifera
Length = 101
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 86 tctgattgagccgcgccaatatc 108
|||||||||||||||||||||||
Sbjct: 67 tctgattgagccgcgccaatatc 89
>RF00643;MIR171_1;AAAA02030424.1/14947-15083 39946:Oryza sativa
Indica Group
Length = 137
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 86 tctgattgagccgcgccaatatctcag 112
||||||||||||| |||||||||||||
Sbjct: 103 tctgattgagccgtgccaatatctcag 129
>RF00643;MIR171_1;ABXC01002454.1/83659-83541 4558:Sorghum bicolor
(sorghum)
Length = 119
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 87 ctgattgagccgcgccaatatc 108
||||||||||||||||||||||
Sbjct: 86 ctgattgagccgcgccaatatc 107
