miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;EU548950.1/213-338 3702:Arabidopsis thaliana
           (thale cress)
          Length = 126

 Score =  121 bits (61), Expect = 2e-27
 Identities = 108/120 (90%), Gaps = 4/120 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggcatctgatgaagctgccagcatgatctaattaactttctttctccgt--ttgt-tttc 61
           |||||||||||||||||||||||||||||||||| |||||||| ||| |  |||| ||||
Sbjct: 5   ggcatctgatgaagctgccagcatgatctaattagctttctttatcctttgttgtgtttc 64

                                                                       
Query: 62  atgacgatgg-aaagagatgagtgtagattagatcatgtttgcagtttcacccgttgact 120
           ||||||||||  ||||||| ||| | |||||||||||||| |||||||||||||||||||
Sbjct: 65  atgacgatggttaagagatcagtctcgattagatcatgttcgcagtttcacccgttgact 124




>RF00640;MIR167_1;AC189327.2/282-159 51351:Brassica rapa subsp.
           pekinensis
          Length = 124

 Score =  115 bits (58), Expect = 1e-25
 Identities = 105/118 (88%), Gaps = 2/118 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggcatctgatgaagctgccagcatgatctaattaactttctttctccgtt-tgttttcat 63
           |||||||||||||||||||||||||||||| |||||||| |||||||||| | | | |||
Sbjct: 5   ggcatctgatgaagctgccagcatgatctagttaactttatttctccgttgtttatccat 64

                                                                     
Query: 64  gacgatgg-aaagagatgagtgtagattagatcatgtttgcagtttcacccgttgact 120
           ||| |||| |||| ||| ||||| |||||||||||||| | |||||||||||||||||
Sbjct: 65  gacaatggaaaagggataagtgtcgattagatcatgttcgtagtttcacccgttgact 122




>RF00640;MIR167_1;ABIM01011014.1/4156-4251 3649:Carica papaya
          (papaya)
          Length = 96

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 7  catctgatgaagctgccagcatgatct 33
          |||| ||||||||||||||||||||||
Sbjct: 7  catcagatgaagctgccagcatgatct 33




>RF00640;MIR167_1;EU532400.1/147-239 3634:Gossypium barbadense
          (sea-island cotton)
          Length = 93

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 14 tgaagctgccagcatgatctaa 35
          ||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctaa 35




>RF00640;MIR167_1;ABIM01012099.1/6617-6710 3649:Carica papaya
          (papaya)
          Length = 94

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 14 tgaagctgccagcatgatctaa 35
          ||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctaa 35




>RF00640;MIR167_1;AARH01002853.1/45908-46003 3694:Populus
          trichocarpa
          Length = 96

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 14 tgaagctgccagcatgatctaa 35
          ||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctaa 35




>RF00640;MIR167_1;AARH01001059.1/157614-157519 3694:Populus
          trichocarpa
          Length = 96

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 14 tgaagctgccagcatgatctaa 35
          ||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctaa 35




>RF00640;MIR167_1;AASG02005785.1/15088-15180 3988:Ricinus communis
          (castor bean)
          Length = 93

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 14 tgaagctgccagcatgatctaa 35
          ||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctaa 35




>RF00640;MIR167_1;AC209507.1/126147-126250 4081:Solanum
          lycopersicum
          Length = 104

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 14 tgaagctgccagcatgatctaa 35
          ||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctaa 35




>RF00640;MIR167_1;AC225328.1/5014-5119 4081:Solanum lycopersicum
          Length = 106

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 14 tgaagctgccagcatgatctaa 35
          ||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctaa 35




>RF00640;MIR167_1;AC225328.1/13792-13888 4081:Solanum lycopersicum
          Length = 97

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 14 tgaagctgccagcatgatctaa 35
          ||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctaa 35




>RF00640;MIR167_1;CAAP02000793.1/41456-41548 29760:Vitis vinifera
          Length = 93

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 14 tgaagctgccagcatgatctaa 35
          ||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctaa 35




>RF00640;MIR167_1;CAAP02001791.1/44208-44309 29760:Vitis vinifera
          Length = 102

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 14 tgaagctgccagcatgatctaa 35
          ||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctaa 35




>RF00640;MIR167_1;ABXC01000326.1/41757-41921 4558:Sorghum bicolor
          (sorghum)
          Length = 165

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 12 gatgaagctgccagcatgatct 33
          ||||||||||||||||||||||
Sbjct: 12 gatgaagctgccagcatgatct 33




>RF00640;MIR167_1;ABXC01000720.1/131669-131557 4558:Sorghum
          bicolor (sorghum)
          Length = 113

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 12 gatgaagctgccagcatgatct 33
          ||||||||||||||||||||||
Sbjct: 12 gatgaagctgccagcatgatct 33




>RF00640;MIR167_1;ABXC01000087.1/205849-206071 4558:Sorghum
          bicolor (sorghum)
          Length = 223

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 14 tgaagctgccagcatgatctaa 35
          ||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctaa 35




>RF00640;MIR167_1;AY551235.1/11-128 4530:Oryza sativa (rice)
          Length = 118

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 12 gatgaagctgccagcatgatct 33
          ||||||||||||||||||||||
Sbjct: 12 gatgaagctgccagcatgatct 33




>RF00640;MIR167_1;AAAA02011018.1/78132-77981 39946:Oryza sativa
          Indica Group
          Length = 152

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 14 tgaagctgccagcatgatctaa 35
          ||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctaa 35